Tran and Constabel, Supplemental Table S1

Supplemental Table S1 Genome-wide identification of PPO genes from the poplar (P. trichocarpa) genome version 1.1

PPO Gene / Protein ID / Gene Model Name / Location and Position / Length (bp)a / MW (kDa)b
PtrPPO13 / 546083* / fgenesh4_pm.C_LG_IV000465 / LG_IV: 14615253-14616755 / 1764 / 67.5
555541 / eugene3.00040254 / LG_IV: 23375788-2338481 / 904
PtrPPO1 / 235529 / gw1.XI.3509.1 / LG_XI: 10322630-10324129 / 1692 / 64.1
PtrPPO8 / 235527 / gw1.XI.3507.1 / LG_XI: 10308145-10310490 / 1139
568258 / eugene3.00110272 / LG_XI: 2765536-2766488 / 953
PtrPPO3 / 568257 / eugene3.00110271 / LG_XI: 2759244-2761308 / 1773 / 66.3
PtrPPO2 / 275859 / gw1.178.49.1 / scaffold_178: 208866-210437 / 1764 / 65.0
275857 / gw1.178.47.1 / scaffold_178: 187478-188369 / 841
PtrPPO9 / 275848 / gw1.178.38.1 / scaffold_178: 175737-177309 / 1573
585480 / eugene3.01780015 / scaffold_178: 117479-118021 / 543c
585479 / eugene3.01780014 / scaffold_178: 116692-116913 / 222c
786653 / fgenesh4_pg.C_scaffold_178000012 / scaffold_178: 109978-110868 / 891
PtrPPO4 / 585475 / eugene3.01780010 / scaffold_178: 78111-80038 / 1746 / 64.9
PtrPPO7 / 275813 / gw1.178.3.1 / scaffold_178: 26947-29575 / 1445c
PtrPPO11 / 276236 / gw1.182.27.1 / scaffold_182: 128349-129884 / 1722 / 64.8
PtrPPO10 / 276228 / gw1.182.19.1 / scaffold_182: 115255-116727 / 1737 / 60.0
PtrPPO5 / 674097 / grail3.0182000101 / scaffold_182: 69909-71874 / 1746 / 64.6
585742 / eugene3.01820005 / scaffold_182: 66486-67223 / 738c
PtrPPO12 / 594316 / eugene3.06370001 / scaffold_637: 8299-9642 / 1746 / 65.0
PtrPPO6 / 790794 / fgenesh4_pg.C_scaffold_1529000001 / scaffold_1529: 56-471 / 414
585390 / eugene3.17730001 / scaffold_1773: 650-1096 / 447c
296394 / gw1.8119.4.1 / scaffold_8119: 422-1755 / 1314
794816 / fgenesh4_pg.C_scaffold_14069000001 / scaffold_14069: 701-1291 / 591

PtrPPO1-PtrPPO8 were previously annotated in the genome. For this analysis, only complete PPO gene models (PtrPPO9-PtrPPO13) were assigned names

* Protein ID for PtrPPO13 corresponds to genome version 1.0. In genome version 1.1, the Protein ID is 800778

a Denotes predicted coding sequence lengths

b Preprocessed molecular weights (MWs) as calculated from ExPASy for the predicted PPO proteins (http://ca.expasy.org/tools/pi_tool.html)

c Denotes incomplete gene model annotations containing a series of Ns or Xs, likely as a result of scaffold assembly problems