Supporting Information Table S6. Linear Fold Changes and Details of Genes Related to Root

Supporting information Table S6.Linear fold changes and details of genes related to root system architecture (RSA) represented by DEGs in three Zn conditions (against their respective controls). Fold changes are significant with q value ≤0.05

MSU Gene ID / DEF2W v/s SUF2W / DEF4W v/s SUF4W / REC3D v/s DEF4W / Description / Trait / Reference
LOC_Os11g47560 / 8.000 / glycosyl hydrolase / CWD / Girke et al. 2004
LOC_Os01g66840 / 6.063 / 5.278 / pectinacetylesterase / CWD / Girke et al. 2004
LOC_Os01g64170 / 5.278 / 4.595 / glycosyl hydrolases family 17 / CWD / Girke et al. 2004
LOC_Os01g54620 / 0.287 / CESA4 - cellulose synthase / CWD / Girke et al. 2004
LOC_Os01g06580 / 0.177 / fasciclin / CWD / Girke et al. 2004
LOC_Os03g01260 / 0.177 / expansin precursor, putative / CWD / Girke et al. 2004
LOC_Os11g27400 / 0.154 / glycosyl hydrolase, putative / CWD / Girke et al. 2004
LOC_Os02g20540 / 0.067 / fasciclin / CWD / Girke et al. 2004
LOC_Os04g51460 / 8.574 / glycosyl hydrolases family 16 / CWD / Girke et al. 2004
LOC_Os06g25010 / 3.249 / glycosyl hydrolase / CWD / Girke et al. 2004
LOC_Os07g35560 / 0.268 / glucan endo-1,3-beta-glucosidase precursor / CWD / Girke et al. 2004
LOC_Os05g08480 / 274.374 / 32.000 / cytokinin-O-glucosyltransferase 1 / GT / Cao et al. 2008
LOC_Os04g12970 / 45.255 / 64.000 / UDP-glucoronosyl/UDP-glucosyl transferase / GT / Cao et al. 2008
LOC_Os04g44250 / 21.112 / 4.595 / cytokinin-O-glucosyltransferase 3 / GT / Cao et al. 2008
LOC_Os04g12720 / 21.112 / 59.714 / indole-3-acetate beta-glucosyltransferase / GT / Cao et al. 2008
LOC_Os05g45100 / 19.698 / 16.000 / anthocyanidin 5,3-O-glucosyltransferase / GT / Cao et al. 2008
LOC_Os04g46970 / 16.000 / 6.498 / glucosyltransferase / GT / Cao et al. 2008
LOC_Os01g45110 / 14.929 / 9.849 / 0.287 / anthocyanin 3-O-beta-glucosyltransferase / GT / Cao et al. 2008
LOC_Os04g12690 / 13.929 / 9.190 / N-hydroxythioamide S-beta-glucosyltransferase / GT / Cao et al. 2008
LOC_Os04g12960 / 12.996 / 11.314 / UDP-glucoronosyl/UDP-glucosyl transferase / GT / Cao et al. 2008
LOC_Os04g20540 / 12.126 / 6.498 / 0.095 / anthocyanidin 3-O-glucosyltransferase / GT / Cao et al. 2008
LOC_Os03g55050 / 11.314 / 8.000 / UDP-glucoronosyl and UDP-glucosyl transferase / GT / Cao et al. 2008
LOC_Os03g53350 / 11.314 / anthocyanin 3-O-beta-glucosyltransferase / GT / Cao et al. 2008
LOC_Os05g45110 / 9.190 / 8.000 / anthocyanidin 5,3-O-glucosyltransferase / GT / Cao et al. 2008
LOC_Os06g18140 / 6.498 / 8.000 / UDP-glucoronosyl and UDP-glucosyl transferase / GT / Cao et al. 2008
LOC_Os04g12950 / 6.498 / 10.556 / indole-3-acetate beta-glucosyltransferase / GT / Cao et al. 2008
LOC_Os09g34250 / 6.063 / 6.063 / 0.189 / UDP-glucoronosyl and UDP-glucosyl transferase / GT / Cao et al. 2008
LOC_Os01g31370 / 5.657 / 8.574 / glycosyltransferase / GT / Cao et al. 2008
LOC_Os02g36830 / 5.657 / cytokinin-O-glucosyltransferase 2 / GT / Cao et al. 2008
LOC_Os01g41430 / 5.278 / UDP-glucoronosyl and UDP-glucosyl transferase / GT / Cao et al. 2008
LOC_Os01g53350 / 5.278 / anthocyanidin 5,3-O-glucosyltransferase / GT / Cao et al. 2008
LOC_Os04g44240 / 4.595 / 5.657 / cytokinin-O-glucosyltransferase 3 / GT / Cao et al. 2008
LOC_Os06g39330 / 4.595 / UDP-glucoronosyl and UDP-glucosyl transferase / GT / Cao et al. 2008
LOC_Os03g03450 / 4.287 / 4.287 / anthranilate phosphoribosyltransferase, chloroplast precursor / GT / Cao et al. 2008
LOC_Os10g03320 / 4.000 / UDP-glucoronosyl and UDP-glucosyl transferase / GT / Cao et al. 2008
LOC_Os09g34230 / 3.732 / 8.574 / UDP-glucoronosyl/UDP-glucosyl transferase / GT / Cao et al. 2008
LOC_Os10g32980 / 0.233 / CESA7 - cellulose synthase / GT / Cao et al. 2008
LOC_Os09g25490 / 0.218 / CESA9 - cellulose synthase / GT / Cao et al. 2008
LOC_Os07g36630 / 0.218 / 4.595 / CSLF8 - cellulose synthase-like family F / GT / Cao et al. 2008
LOC_Os05g32130 / 0.203 / expressed protein / GT / Cao et al. 2008
LOC_Os01g43270 / 0.177 / hydroquinone glucosyltransferase / GT / Cao et al. 2008
LOC_Os07g36750 / 0.095 / CSLF3 - cellulose synthase-like family F; beta1,3;1,4 glucan synthase / GT / Cao et al. 2008
LOC_Os05g45180 / 0.054 / anthocyanidin 5,3-O-glucosyltransferase / GT / Cao et al. 2008
LOC_Os03g60960 / 0.047 / cytokinin-N-glucosyltransferase 1 / GT / Cao et al. 2008
LOC_Os09g03140 / 0.044 / cytokinin-O-glucosyltransferase 2 / GT / Cao et al. 2008
LOC_Os02g36810 / 8.000 / 0.125 / cytokinin-O-glucosyltransferase 2 / GT / Cao et al. 2008
LOC_Os04g47720 / 9.849 / cis-zeatin O-glucosyltransferase / GT / Cao et al. 2008
LOC_Os04g46980 / 4.925 / cis-zeatin O-glucosyltransferase / GT / Cao et al. 2008
LOC_Os02g50600 / 3.482 / glycosyl transferase 8 / GT / Cao et al. 2008
LOC_Os03g16334 / 3.482 / fringe-related protein / GT / Cao et al. 2008
LOC_Os03g62480 / 16.000 / 19.698 / 0.203 / anthocyanidin 5,3-O-glucosyltransferase / LRD / Takehisa et al. 2012
LOC_Os03g05700 / 9.190 / expressed protein / LRD / Takehisa et al. 2012
LOC_Os09g27040 / 7.464 / 4.287 / GEX1 / LRD / Takehisa et al. 2012
LOC_Os10g40430 / 6.063 / LTPL139 / LRD / Takehisa et al. 2012
LOC_Os12g38290 / 5.657 / 0.203 / metallothionein / LRD / Takehisa et al. 2012
LOC_Os04g54200 / 4.925 / diacylglycerol kinase / LRD / Takehisa et al. 2012
LOC_Os06g11610 / 4.925 / heat shock 22 kDa protein, mitochondrial precursor / LRD / Takehisa et al. 2012
LOC_Os01g61080 / 4.595 / 5.657 / WRKY24 / LRD / Takehisa et al. 2012
LOC_Os05g29810 / 4.287 / 9.849 / AP2 / LRD / Takehisa et al. 2012
LOC_Os10g38600 / 4.287 / glutathione S-transferase GSTU6, putative / LRD / Takehisa et al. 2012
LOC_Os12g01530 / 4.000 / ferritin-1, chloroplast precursor / LRD / Takehisa et al. 2012
LOC_Os07g39350 / 3.732 / transporter family protein / LRD / Takehisa et al. 2012
LOC_Os09g37200 / 3.482 / 3.732 / transferase family protein / LRD / Takehisa et al. 2012
LOC_Os04g45270 / 0.268 / aspartyl protease family protein / LRD / Takehisa et al. 2012
LOC_Os04g53950 / 0.250 / glycosyl hydrolases family 16 protein / LRD / Takehisa et al. 2012
LOC_Os06g28000 / 0.218 / carboxyl-terminal peptidase / LRD / Takehisa et al. 2012
LOC_Os05g38000 / 0.218 / ATROPGEF7/ROPGEF7 / LRD / Takehisa et al. 2012
LOC_Os07g03730 / 0.203 / 0.250 / SCP-like extracellular protein / LRD / Takehisa et al. 2012
LOC_Os09g33830 / 0.189 / 0.165 / solute carrier family 35 member F1 / LRD / Takehisa et al. 2012
LOC_Os02g44300 / 0.189 / MSP / LRD / Takehisa et al. 2012
LOC_Os08g43400 / 0.154 / kinesin motor / LRD / Takehisa et al. 2012
LOC_Os05g07600 / 0.036 / expressed protein / LRD / Takehisa et al. 2012
LOC_Os01g74020 / 0.165 / 4.595 / MYB family transcription factor / LRD / Takehisa et al. 2012
LOC_Os06g21410 / 32.000 / arabinogalactan peptide 23 precursor / LRD / Takehisa et al. 2012
LOC_Os01g65830 / 32.000 / acyl-desaturase, chloroplast precursor / LRD / Takehisa et al. 2012
LOC_Os03g45250 / 9.190 / 2-aminoethanethiol dioxygenase / LRD / Takehisa et al. 2012
LOC_Os01g55510 / 6.964 / dynein light chain type 1 / LRD / Takehisa et al. 2012
LOC_Os10g32760 / 6.063 / zinc finger family protein / LRD / Takehisa et al. 2012
LOC_Os01g52130 / 5.657 / sulfate transporter / LRD / Takehisa et al. 2012
LOC_Os07g36170 / 4.287 / chitin-inducible gibberellin-responsive protein / LRD / Takehisa et al. 2012
LOC_Os03g63270 / 4.000 / regulatory protein / LRD / Takehisa et al. 2012
LOC_Os07g39520 / 3.732 / STE_PAK_Ste20_Slob_Wnk.5 - STE kinases / LRD / Takehisa et al. 2012
LOC_Os01g64110 / 3.482 / glycosyl hydrolase / LRD / Takehisa et al. 2012
LOC_Os01g49310 / 0.287 / expressed protein / LRD / Takehisa et al. 2012
LOC_Os08g04450 / 0.218 / DAG protein, chloroplast precursor / LRD / Takehisa et al. 2012
LOC_Os01g37000 / 0.203 / carboxyl-terminal peptidase / LRD / Takehisa et al. 2012
LOC_Os02g51930 / 6.964 / 4.595 / cytokinin-O-glucosyltransferase 2 / LRF / Takehisa et al. 2012
LOC_Os02g47810 / 6.964 / 4.287 / dof zinc finger / LRF / Takehisa et al. 2012
LOC_Os04g45520 / 6.063 / 6.063 / integral membrane protein / LRF / Takehisa et al. 2012
LOC_Os03g04240 / 0.268 / glutathione S-transferase / LRF / Takehisa et al. 2012
LOC_Os04g08390 / 0.250 / Leucine Rich Repeat family protein / LRF / Takehisa et al. 2012
LOC_Os03g04220 / 0.218 / glutathione S-transferase, putative / LRF / Takehisa et al. 2012
LOC_Os01g07570 / 0.189 / carboxyl-terminal proteinase / LRF / Takehisa et al. 2012
LOC_Os04g08370 / 0.165 / Leucine Rich Repeat family protein / LRF / Takehisa et al. 2012
LOC_Os03g04250 / 0.165 / glutathione S-transferase, putative / LRF / Takehisa et al. 2012
LOC_Os05g13320 / 0.082 / C4-dicarboxylate transporter/malic acid transport protein / LRF / Takehisa et al. 2012
LOC_Os07g07440 / 14.929 / 8.000 / versicolorin reductase / RC / Takehisa et al. 2012
LOC_Os03g57640 / 14.929 / 11.314 / gibberellin receptor GID1L2 / RC / Takehisa et al. 2012
LOC_Os11g47500 / 13.929 / 3.732 / glycosyl hydrolase / RC / Takehisa et al. 2012
LOC_Os01g50100 / 12.126 / 9.190 / ABC transporter, ATP-binding protein / RC / Takehisa et al. 2012
LOC_Os08g02200 / 12.126 / expressed protein / RC / Takehisa et al. 2012
LOC_Os01g40290 / 12.126 / expressed protein / RC / Takehisa et al. 2012
LOC_Os04g53606 / 10.556 / 5.657 / expressed protein / RC / Takehisa et al. 2012
LOC_Os03g04770 / 8.574 / 4.925 / beta-amylase / RC / Takehisa et al. 2012
LOC_Os05g09440 / 8.574 / 6.498 / NADP-dependent malic enzyme, chloroplast / RC / Takehisa et al. 2012
LOC_Os06g11290 / 8.000 / 5.657 / 12-oxophytodienoate reductase / RC / Takehisa et al. 2012
LOC_Os04g06520 / 8.000 / 5.657 / expressed protein / RC / Takehisa et al. 2012
LOC_Os08g24750 / 7.464 / 6.498 / xyloglucan fucosyltransferase / RC / Takehisa et al. 2012
LOC_Os12g18560 / 7.464 / invertase/pectin methylesterase inhibitor family protein / RC / Takehisa et al. 2012
LOC_Os01g66530 / 6.964 / 5.657 / ARGOS / RC / Takehisa et al. 2012
LOC_Os08g40680 / 6.964 / 4.000 / glycosyl hydrolase / RC / Takehisa et al. 2012
LOC_Os10g33040 / 6.498 / 6.063 / receptor-like protein kinase precursor / RC / Takehisa et al. 2012
LOC_Os05g50380 / 6.498 / glucose-1-phosphate adenylyltransferase large subunit / RC / Takehisa et al. 2012
LOC_Os08g04560 / 6.498 / 3.732 / 0.287 / decarboxylase / RC / Takehisa et al. 2012
LOC_Os03g12110 / 5.657 / 4.000 / homocysteine S-methyltransferase protein / RC / Takehisa et al. 2012
LOC_Os10g21590 / 5.278 / transporter family protein / RC / Takehisa et al. 2012
LOC_Os03g52390 / 5.278 / 8.000 / PIII1 - Proteinase inhibitor II family protein precursor / RC / Takehisa et al. 2012
LOC_Os05g25920 / 4.925 / expressed protein / RC / Takehisa et al. 2012
LOC_Os01g72150 / 4.925 / 12.126 / 0.144 / glutathione S-transferase / RC / Takehisa et al. 2012
LOC_Os12g16720 / 4.925 / cytochrome P450 71A1 / RC / Takehisa et al. 2012
LOC_Os10g38489 / 4.595 / 9.849 / 0.250 / glutathione S-transferase GSTU6 / RC / Takehisa et al. 2012
LOC_Os04g10350 / 4.595 / 1-aminocyclopropane-1-carboxylate oxidase homolog 2 / RC / Takehisa et al. 2012
LOC_Os09g12660 / 4.287 / 0.250 / glucose-1-phosphate adenylyltransferase large subunit / RC / Takehisa et al. 2012
LOC_Os12g15680 / 4.000 / 5.657 / laccase precursor protein / RC / Takehisa et al. 2012
LOC_Os03g52370 / 4.000 / 4.595 / PIII4 - Proteinase inhibitor II family protein / RC / Takehisa et al. 2012
LOC_Os01g43750 / 4.000 / cytochrome P450 72A1 / RC / Takehisa et al. 2012
LOC_Os03g52360 / 3.732 / 4.000 / PIII3 - Proteinase inhibitor II family protein precursor / RC / Takehisa et al. 2012
LOC_Os06g06560 / 3.249 / starch synthase / RC / Takehisa et al. 2012
LOC_Os12g43130 / 3.249 / 4.287 / phytoene synthase, chloroplast precursor / RC / Takehisa et al. 2012
LOC_Os01g57599 / 0.250 / retrotransposon protein / RC / Takehisa et al. 2012
LOC_Os12g25180 / 0.250 / expressed protein / RC / Takehisa et al. 2012
LOC_Os07g37350 / 0.203 / armadillo/beta-catenin repeat family protein / RC / Takehisa et al. 2012
LOC_Os01g65630 / 0.177 / expressed protein / RC / Takehisa et al. 2012
LOC_Os01g02060 / 0.134 / TOO MANY MOUTHS precursor / RC / Takehisa et al. 2012
LOC_Os07g41340 / 0.134 / 5.657 / B12D protein / RC / Takehisa et al. 2012
LOC_Os01g34790 / 0.134 / expressed protein / RC / Takehisa et al. 2012
LOC_Os05g39830 / 0.077 / expressed protein / RC / Takehisa et al. 2012
LOC_Os01g12690 / 6.498 / plant-specific domain TIGR01568 family protein / RC / Takehisa et al. 2012
LOC_Os12g35610 / 11.314 / respiratory burst oxidase / RC / Takehisa et al. 2012
LOC_Os01g21120 / 8.574 / AP2 / RC / Takehisa et al. 2012
LOC_Os06g49340 / 6.964 / OsFBDUF35 - F-box and DUF / RC / Takehisa et al. 2012
LOC_Os02g21300 / 6.964 / transposon protein, putative, unclassified / RC / Takehisa et al. 2012
LOC_Os04g54240 / 6.063 / wound induced protein / RC / Takehisa et al. 2012
LOC_Os12g09640 / 5.657 / protein phosphatase 2C / RC / Takehisa et al. 2012
LOC_Os01g66860 / 5.657 / serine/threonine protein kinase / RC / Takehisa et al. 2012
LOC_Os07g36610 / 5.278 / CSLF9 - cellulose synthase-like family F / RC / Takehisa et al. 2012
LOC_Os11g10710 / 4.925 / protein kinase / RC / Takehisa et al. 2012
LOC_Os02g01510 / 4.925 / lactate/malate dehydrogenase, putative / RC / Takehisa et al. 2012
LOC_Os08g37660 / 4.287 / plastocyanin-like / RC / Takehisa et al. 2012
LOC_Os04g31610 / 4.000 / OsFBO3 - F-box and other / RC / Takehisa et al. 2012
LOC_Os03g49260 / 0.218 / lipoxygenase, putative / RC / Takehisa et al. 2012
LOC_Os01g50820 / 0.189 / transporter, major facilitator family / RC / Takehisa et al. 2012
LOC_Os06g37750 / 0.165 / S-locus-like receptor protein kinase / RC / Takehisa et al. 2012

CWM- Cell Wall metabolism, GT- Glycosyl transferase, LRD- Lateral Root Development R5 stage, LEF- Lateral Root Formation, RCS- Root Cap Specific. See text for more details.