Supplementary Table S1B Genes over-expressed in Flexor digitorum (FD)

Gene symbol / Gene name / GeneID / Na / Fold changesb
ACSL3 / Acyl-CoA synthetase long-chain family member 3 / 100138312 / 1 / 1.34
ACTN2 / Actinin, alpha 2 / 536607 / 1 / 1.58
AHNAK / AHNAK nucleoprotein / 531336 / 1 / 1.69
ANXA2 / Annexin A2 / 282689 / 1 / 1.51
APOE / Apolipoprotein E / 281004 / 1 / 1.36
ASB12 / Ankyrin repeat and SOCS box-containing 12 / 539344 / 1 / 1.47
ASB5 / Ankyrin repeat and SOCS box-containing 5 / 516722 / 1 / 2.08
BIN1 / Bridging integrator 1 / 614576 / 1 / 1.82
BOLA-N / MHC class I antigen / 100126048 / 1 / 1.55
CA3 / Carbonic anhydrase III, muscle specific / 513212 / 21 / 1.29-4.85
CD63 / CD63 molecule / 404156 / 1 / 1.36
CLU / Clusterin / 280750 / 2 / 1.54-1.75
COL1A1 / Collagen type I, alpha 1 / 282187 / 26 / 1.60-4.15
COL1A2 / Collagen type I, alpha 2 / 282188 / 8 / 1.69-3.29
COL3A1 / Collagen type III, alpha 1 / 510833 / 16 / 1.44-2.60
COX1 / Cytochrome c oxidase subunit I / 3283879 / 43 / 1.35-2.34
COX7A2 / Cytochrome c oxidase subunit VIIa polypeptide 2 (liver) / 327688 / 1 / 1.62
CREG1 / Cellular repressor of E1A-stimulated genes 1 / 530908 / 1 / 2.17
CRYAB / Crystallin, alpha B / 281719 / 14 / 1.60-4.31
CSRP3 / Cysteine and glycine-rich protein 3 / 540407 / 8 / 3.20-15.25
CYB5R3 / Cytochrome b5 reductase 3 / 515773 / 1 / 1.40
DCN / Decorin / 280760 / 9 / 1.87-2.84
DECR1 / 2,4-dienoyl-CoA reductase 1 / 509952 / 1 / 1.61
DES / Desmin / 280765 / 5 / 1.51-1.89
DUSP1 / Dual specificity phosphatase 1 / 539175 / 1 / 1.41
EEF1A1 / Eukaryotic translation elongation factor 1 alpha 1 / 282220 / 19 / 1.75-3.48
EIF2AK1 / Eukaryotic translation initiation factor 2-alpha kinase 1 / 507689 / 1 / 1.86
FABP3 / Fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor) / 281758 / 1 / 2.31
FAM127A / Family with sequence similarity 127, member A / 511516 / 1 / 1.58
FHL1 / Four and a half LIM domains 1 (FHL1), transcript variant 3 / 509056 / 27 / 1.48-2.67
FKBP3 / FK506 binding protein 3, 25kDa / 515069 / 1 / 1.41
FTL / Ferritin, light polypeptide / 286861 / 1 / 1.74
GNAS / GNAS complex locus / 281793 / 1 / 1.37
GSN / Gelsolin / 535077 / 1 / 1.76
HN1 / Hematological and neurological expressed 1 / 613381 / 1 / 1.69
HSD17B4 / Hydroxysteroid (17-beta) dehydrogenase 4 / 493643 / 1 / 2.05
HSP90AA1 / Heat shock 90kD protein 1, alpha / 281832 / 4 / 1.40-1.62
HSP90AB1 / Heat shock 90kDa protein 1, beta / 767874 / 2 / 1.49
HSPB1 / Heat shock 27kDa protein 1 / 516099 / 1 / 1.44
HSPB6 / Heat shock protein, alpha-crystallin-related, B6 / 534551 / 4 / 1.38-2.78
INO80B / INO80 complex subunit B / 509187 / 1 / 2.85
KBTBD10 / Kelch repeat and BTB (POZ) domain containing 10 / 505794 / 9 / 1.67-2.19
LDHB / Lactate dehydrogenase B / 281275
613595 / 2 / 1.62-2.41
LGALS1 / Lectin, galactoside-binding, soluble, 1 / 326598 / 2 / 1.62-1.76
LOC100336568 / Laminin alpha 5-like / 100336568 / 1 / 1.55
LOC512251 / Similar to heat shock 27kDa protein family, member 7 / 512251 / 1 / 4.50
LOC782445 / Myosin, light chain 12A, regulatory, non-sarcomeric-like / 782445 / 1 / 2.15
LOC785923 / V-type proton ATPase 116 kDa subunit a-like / 785923 / 1 / 1.73
LOC786430 / Ribosomal protein L23a pseudogene / 786430 / 1 / 1.36
I-rRNA / I-rRNA / NC_006853.1 / 1 / 1.33
MACROD1 / MACRO domain containing 1 / 613568 / 1 / 1.45
MB / Myoglobin / 280695 / 23 / 1.40-2.36
MGP / Matrix Gla protein / 282660 / 3 / 1.47-1.72
MRCL3 / Myosin regulatory light chain MRCL3 / 531505 / 1 / 2.74
MSN / Moesin / 540426 / 1 / 2.18
MUSTN1 / Muskuloskeletal, embryonic nuclear protein 1 / 616088 / 5 / 1.70-2.88
MYBPC1 / Myosin binding protein C, slow type / 510763 / 1 / 1.33
MYH7 / Myosin, heavy chain 7, cardiac muscle, beta / 282714 / 3 / 1.46-2.11
MYL2 / Myosin, light chain 2, regulatory, cardiac, slow / 505519 / 39 / 1.39-2.78
MYL6 / Myosin, light chain 6, alkali, smooth muscle and non-muscle / 281341 / 2 / 2.51-3.13
MYOT / Myotilin / 507884 / 4 / 1.44-1.80
MYOZ2 / Myozenin 2 / 540487 / 1 / 3.42
NDUFV3 / NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa / 327717 / 1 / 1.35
NFE2L1 / Nuclear factor (erythroid-derived 2)-like 1 / 534582 / 1 / 1.54
NOP10 / Ribonucleoprotein homolog (yeast) / 616675 / 1 / 3.41
PDLIM3 / PDZ and LIM domain 3 / 538516 / 8 / 1.47-1.99
PLN / Phospholamban / 100125240 / 1 / 1.63
PMCH / Pro-melanin-concentrating hormone / 508013 / 1 / 1.71
PPP1R14A / Protein phosphatase 1, regulatory (inhibitor) subunit 14A / 615348 / 1 / 1.90
PPP1R14C / PKC-potentiated PP1 inhibitory protein-like /protein phosphatase 1, regulatory (inhibitor) subunit 14C / 783497
617148 / 1 / 1.98
RNF103 / Ring finger protein 103 / 511639 / 1 / 1.68
RPL10 / Ribosomal protein L10 / 286790 / 1 / 1.41
RPL14 / Ribosomal protein L14 / 539373 / 1 / 1.59
RPL17 / Ribosomal protein L17 / 514046 / 2 / 1.44-1.47
RPL18 / Ribosomal protein L18 / 509163 / 1 / 1.39
RPL21 / Ribosomal protein L21 / 326584 / 2 / 1.38-1.57
RPL24 / Ribosomal protein L24 / 282048 / 1 / 1.58
RPL35 / Ribosomal protein L35 / 515534 / 1 / 1.30
RPL37A / Ribosomal protein L37a / 504413 / 1 / 1.41
RPL4 / Ribosomal protein L4 / 510547 / 2 / 1.21-1.84
RPL5 / Ribosomal protein L5 / 515238 / 1 / 1.46
RPL6 / Ribosomal protein L6 / 511051 / 1 / 1.46
RPL8 / Ribosomal protein L8 / 535056 / 1 / 1.68
RPLP0 / Ribosomal protein, large, P0 / 286868 / 5 / 1.36-1.66
RPS12 / Ribosomal protein S12 / 326582 / 2 / 1.45-1.51
RPS19 / Ribosomal protein S19 / 516063 / 1 / 1.39
RPS2 / Ribosomal protein S2 / 286867 / 3 / 1.35-1.71
RPS20 / Ribosomal protein S20 / 513222
515141 / 2 / 1.35-1.39
RPS26 / Ribosomal protein S26 / 509426 / 1 / 1.43
RPS27 / Ribosomal protein S27 / 615638 / 1 / 1.45
RPS3A / Ribosomal protein S3A / 282053 / 1 / 1.41
RPS4X / Ribosomal protein S4, X-linked / 614241 / 1 / 1.46
RPS6 / Ribosomal protein S6 / 508628 / 2 / 1.41-1.93
RPS8 / Ribosomal protein S8 / 404140 / 1 / 1.36
RPSA / Ribosomal protein SA / 281898 / 4 / 1.48-1.59
S100A1 / S100 calcium binding protein A1 / 528735 / 1 / 2.06
S100A10 / S100 calcium binding protein A10 / 282466 / 2 / 1.39-1.49
S100A4 / S100 calcium binding protein A4 / 282343 / 1 / 1.79
SEC23A / Sec23 homolog A (S. cerevisiae) / 533994 / 1 / 1.55
SERINC2 / Serine incorporator 2 / 513593 / 1 / 1.84
SPARC / Secreted protein, acidic, cysteine-rich (osteonectin) / 282077 / 26 / 1.60-2.60
TCAP / Titin-cap (telethonin) / 513257 / 4 / 1.20-1.55
TMEM38A / Transmembrane protein 38A / 532775 / 1 / 2.01
TMSB4X / Thymosin, beta 4, X-linked / 781334 / 3 / 1.52-1.87
TNNC1 / Troponin C type 1 (slow) / 509486 / 12 / 1.57-2.16
TNNT1 / Troponin T type 1 (skeletal, slow) / 282095 / 13 / 1.81-2.47
TPM3 / Tropomyosin 3 / 497019 / 4 / 1.53-1.90
TPT1 / Tumor protein, translationally-controlled 1 / 326599
788457 / 1 / 2.75
TUBA1B / Tubulin, alpha 1b / 539882 / 2 / 1.33-1.42
UBA52 / Ubiquitin A-52 residue ribosomal protein fusion product 1 / 615199 / 1 / 5.84
VIM / Vimentin / 280955 / 7 / 1.56-2.18

anumber of DE elements per gene

bmeasured as 2dif, where “dif” is the average intensity in PM minus the average intensity in FD