Table S12. Candidates for phase marker genes
Candidates with clear annotations were listed.
Marker / ID / AnnotationS / Specific / LmiTr10242 / Blue (type 1) copper domain
LmiTr10742 / Envelope glycoprotein
LmiTr14216 / similar to forkhead box transcription factor subgroup N1
LmiTr16555 / Zinc finger
LmiTr19871 / toll, putative
LmiTr19949 / Immunoglobulin/major histocompatibility complex, conserved site
LmiTr20893 / structural constituent of cuticle
LmiTr22762 / similar to AGAP006594-PA
LmiTr23730 / IPR001611; Leucine-rich repeat
LmiTr25566 / similar to AGAP003204-PA
LmiTr26010 / similar to phospholipase c epsilon
LmiTr27012 / Down syndrome cell adhesion molecule isoform
LmiTr2907 / ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding
LmiTr33603 / similar to p20-CGGBP
LmiTr35252 / mitochondrial ornithine transporter
LmiTr35336 / similar to Zinc carboxypeptidase family protein
LmiTr36044 / choline/ethanolamine kinase
LmiTr3651 / arylsulfatase
LmiTr36599 / Cytochrome P450
LmiTr37427 / translation initiation factor 5a
LmiTr38792 / similar to Egg-derived tyrosine phosphatase CG6542-PA
LmiTr38857 / Peptidoglycan-binding domain 1 protein
LmiTr40231 / similar to pol polyprotein
LmiTr41045 / similar to AGAP003417-PA
LmiTr41265 / similar to combgap
LmiTr42914 / similar to gag-pol polyprotein
LmiTr43323 / transposase
LmiTr43728 / tyrosine kinase receptor
LmiTr44523 / similar to CG8785-PA
LmiTr44759 / insulin receptor tyrosine kinase substrate
LmiTr45530 / similar to ENSANGP00000019247
LmiTr45591 / similar to gag-pol polyprotein
LmiTr46089 / PREDICTED: similar to CG1213-PA
LmiTr46392 / Ankyrin
LmiTr47322 / homeobox protein prospero/prox-1
LmiTr48318 / sugar transporter
LmiTr48334 / similar to AGAP005245-PD isoform 4
LmiTr48569 / Na[+]-dependent inorganic phosphate cotransporter
LmiTr49004 / similar to echinus CG2904-PB
LmiTr49017 / CLIP-domain serine protease subfamily B
LmiTr49045 / Hairy protein
LmiTr49976 / similar to ENSANGP00000024305
LmiTr50705 / similar to Insulin receptor tyrosine kinase substrate
LmiTr51485 / similar to CG6330
LmiTr51519 / fructose 1,6-bisphosphate aldolase
LmiTr52010 / geminin
LmiTr52235 / DEATH-like
LmiTr52586 / Acyl-CoA synthetase family member
LmiTr53319 / Zinc finger
LmiTr53349 / similar to APC-like CG1451-PA
LmiTr53582 / mucin 5, subtype B, tracheobronchial, partial
LmiTr54690 / similar to polyprotein
LmiTr54697 / similar to CG12071-PB
LmiTr70690 / similar to GF15004
LmiTr7650 / ATPase, F0 complex, subunit C
LmiTr8957 / similar to spalt major
LmiTr9307 / reverse transcriptase
LmiTr9570 / RNA-directed RNA polymerase catalytic subunit
LmiTr11181 / similar to amontillado CG6438-PA
Stable Difference / LmiTr37778 / similar to klarsicht CG17046-PA
LmiTr13236 / neurotactin
LmiTr33431 / similar to Choline/ethanolamine kinase
LmiTr18413 / similar to Choline/ethanolamine kinase
LmiTr8056 / similar to Darkener of apricot CG33553-PG
LmiTr52217 / Dentin sialophosphoprotein precursor
LmiTr15416 / similar to GF11368
LmiTr3607 / similar to CG31132-PA
G / Specific / LmiTr11466 / similar to activating transcription factor 2 isoform 1
LmiTr11574 / membrane-associated RING finger protein
LmiTr1234 / mfs transporter
LmiTr12896 / carbohydrate kinase-like
LmiTr1338 / cytoplasmic dynein heavy chain
LmiTr14105 / defensin
LmiTr14631 / Chain A, Ketose Reductase
LmiTr15638 / ankyrin 2,3/unc44
LmiTr18706 / cadherin-like Cry1Ac receptor
LmiTr18848 / similar to CG7627-PA
LmiTr19471 / Pyridoxal phosphate phosphatase
LmiTr19556 / ubiquitin-conjugating enzyme rad6
LmiTr1972 / similar to 120.7 kDa protein in NOF-FB transposable element
LmiTr19894 / galactosidase, beta 1-like 2
LmiTr20262 / Glycine N-methyltransferase
LmiTr20281 / guanylate cyclase
LmiTr20359 / gag-pol polyprotein
LmiTr20678 / UNC93A protein
LmiTr20712 / N-acetylgalactosaminyltransferase
LmiTr21541 / Cystinosin homolog
LmiTr21652 / similar to CG9084
LmiTr22176 / ankyrin 2,3/unc44
LmiTr22448 / similar to AGAP004232-PA
LmiTr22643 / nuclear receptor
LmiTr22835 / similar to rotatin
LmiTr23246 / Phosphotransferase system, HPr histidine phosphorylation site
LmiTr23484 / zinc finger protein, putative
LmiTr24169 / Guanylyl cyclase at 89Db CG14886-PA
LmiTr24270 / phospholipase
LmiTr2473 / galactosidase
LmiTr25060 / endonuclease and reverse transcriptase-like protein
LmiTr25802 / similar to cpg binding protein
LmiTr26059 / similar to GM26411
LmiTr26148 / Uncharacterized protein U88
LmiTr26269 / similar to CG8709-PA
LmiTr26411 / Tubulin beta chain
LmiTr27293 / Voltage-dependent calcium channel subunit alpha-2/delta-3
LmiTr27965 / similar to protease, reverse transcriptase and RNase H
LmiTr28000 / glutathione-S-transferase-like protein
LmiTr28491 / RNA-directed DNA polymerase
LmiTr28568 / similar to CG31224-PA
LmiTr28853 / Serine-arginine protein
LmiTr28858 / Kinase suppressor of Ras 2
LmiTr28934 / heterogeneous nuclear ribonucleoprotein k
LmiTr29122 / similar to ENSANGP00000024769
LmiTr30 / similar to sallimus CG1915-PC
LmiTr32840 / calcium/calmodulin-dependent serine protein kinase membrane-associated guanylate kinase (cask)
LmiTr33265 / similar to Trafficking protein particle complex subunit 2-like protein
LmiTr33383 / diphosphomevalonate decarboxylase
LmiTr3355 / Dolichyldiphosphatase
LmiTr33628 / Enoyl-CoA hydratase domain-containing protein
LmiTr34831 / retinitis pigmentosa GTPase regulator-like protein
LmiTr351 / similar to predicted protein
LmiTr3510 / similar to Zinc finger protein 208
LmiTr36224 / 7,8-dihydro-8-oxoguanine triphosphatase
LmiTr36934 / similar to GG1360
LmiTr38126 / Lethal(3)malignant brain tumor-like 3 protein
LmiTr38320 / N-acetylgalactosamine kinase
LmiTr39791 / Serine/arginine repetitive matrix protein
LmiTr39940 / similar to Multidrug resistance protein homolog
LmiTr40891 / beta-1,3-glucanase
LmiTr4110 / Dedicator of cytokinesis protein 11
LmiTr43405 / similar to ATP-binding cassette transporter
LmiTr44528 / heat shock protein 20.5
LmiTr4480 / similar to pol-like protein
LmiTr45287 / neotenic-specific protein
LmiTr46042 / similar to UNC93A protein
LmiTr46410 / beta-glucosidase
LmiTr4746 / L-gulonolactone oxidase
LmiTr48926 / similar to GA18912-PA [Tribolium castaneum]
LmiTr49427 / similar to Peroxisomal biogenesis factor 6
LmiTr49586 / mitochondrial import protein MMP37
LmiTr4973 / reverse transcriptase-like
LmiTr50167 / VPS9-ankyrin repeat-containing protein
LmiTr50419 / similar to mediator complex
LmiTr51218 / Sodium-coupled monocarboxylate transporter
LmiTr51630 / similar to endonuclease-reverse transcriptase
LmiTr53345 / UDP-glucuronosyltransferase
LmiTr53529 / similar to GE16190
LmiTr53712 / secretory Phospholipasennis]
LmiTr53747 / Zinc finger protein
LmiTr70136 / U6 snRNA-associated Sm-like protein
LmiTr70829 / dkey-189p24.5 proteinn adenosyltransferase-like
LmiTr71646 / Zinc carboxypeptidase
Stable Difference / LmiTr22731 / similar to WD repeat domain 24
LmiTr52304 / similar to CG33556-PA
LmiTr26204 / similar to serine threonine-protein kinase
LmiTr37201 / Protein Malvolio （taste behavior）
LmiTr5765 / topoisomerase III alpha
LmiTr6611 / 26S proteasome regulatory subunit
LmiTr33504 / Multidrug resistance-associated protein 1
LmiTr26373 / Protein Malvolio （taste behavior）
LmiTr9401 / protein arginine n-methyltransferase
LmiTr2211 / similar to CG11877-PA
LmiTr15663 / Annexin-B9
LmiTr5089 / Conserved oligomeric Golgi complex subunit 4
LmiTr6223 / nad dehydrogenase
LmiTr14894 / protein disulfide isomerase
LmiTr1326 / Conserved oligomeric Golgi complex subunit 4
LmiTr3237 / proteasome 26S non-ATPase subunit 2
LmiTr6169 / Transmembrane protein
LmiTr2139 / ubiquitin carboxyl-terminal hydrolase
LmiTr22245 / Staphylococcal nuclease (SNase-like), OB-fold
LmiTr18631 / Transcriptional adapter
LmiTr4499 / Exocyst complex component 4
LmiTr13508 / Multidrug resistance-associated protein 1
LmiTr17982 / DEAD box polypeptide 5
LmiTr23897 / similar to lethal (3) 07882 CG5824-PA
LmiTr12249 / transposable element tc1 transposase
LmiTr20670 / 5'-AMP-activated protein kinase subunit beta-1
LmiTr15378 / Fragile X mental retardation syndrome-related protein 1
LmiTr43797 / Exocyst complex component 4