Supplementary Table 4Putative function, identity and restriction map of the sequenced MSAP profiles showing variation in sorghum inter-strain hybrids relative to their inbred parents

MSAP profiles / Plant line and tissue whereby the variant band being isolated / Function based on BlastX against the NCBI database / Identity based on BlastN against the NCBI database / Size and restriction map
A20 / E
Leaf / DRE-binding protein 2 [Sorghum bicolor] ABD66654.1
1e-44 / Sorghum bicolor DRE-binding protein 2 (DREB2) mRNA
DQ403725.1
1e-169 / H H
304
A33 / A, E
Leaf / Transposon protein, putative, Mariner sub-class [Oryza sativa]
ABF98389.1
2e-23 / Sorghum bicolor clone Sb1317 transposon mariner-like transposase
pseudogene
AF432553.1
9e-143 / EcoRI H
303
A39 / E
Leaf / Unknown protein [Oryza sativa]
AAV67816.1
1e-06 / Oryza sativa genomic DNA
AP008207.1
2e-36 / M EcoRI
425
A45 / AE
Leaf / OSJNBa0069D17.5 [Oryza sativa]
XP_472175.1
7e-11 / Oryza sativa genomic DNA, chromosome 4
AP008210.1
1e-15 / H EcoRI
324
A41 / AE, E
Leaf / Sorghum bicolor RAMOSA1 C2H2 zinc-finger transcription factor
(ramosa1) gene
AY957398.1
0.0 / H H
424
A21 / AE
Leaf / Putative wall-associated kinase 1 [Oryza sativa]
NP_920159.1
4e-14 / M EcoRI
269
A26 / F
Leaf / Putative receptor protein kinase CRINKLY4 [Oryza sativa]
XP_550056.1
3e-10 / H/M EcoRI
343
C13 / I
Leaf / Putative reverse transcriptase [Oryza sativa]
NP_909605.1
6e-08 / EcoRI H/M
283
H5-3 / I
Leaf / Leaf senescence related protein-like [Oryza sativa]
BAD61231.1
6e-05 / EcoRI H/M
216
A1-6 / F
Leaf / IcmB protein [Burkholderia vietnamiensis G4]
ZP_00422188.1
5e-06 / H/M EcoRI
190
A17 / A
Leaf / Putative RIRE2 orf3 [Sorghum bicolor]
AAL68847.1
2e-04 / EcoRI M
349
A34 / E
Leaf / Putative alcohol dehydrogenase [Oryza sativa]
NP_914761.1
3e-05 / M M
470
A40 / B, F
Leaf / Sorghum bicolor clone SBTXS_0032H17 putative cytochrome P450-like protein
AF466201.1
5e-13 / EcoRI M
473
A48 / A
Leaf / Sorghum bicolor putative kinase protein
AF466200.2
3e-42 / H/M H/M
478
A29 / A, E
Leaf / Oryza sativa chromosome 5 clone P0599F04
AC132491.2
2e-04 / EcoRI M
248
C9 / CH, H
Leaf / Oryza sativa genomic DNA, chromosome 9
AP008215.1
2e-37 / H/M EcoRI
131
C11 / CI
Leaf / Sorghum bicolor clone SB20O07, putative genetic modifier
AY542311.1
7e-18 / H EcoRI
428
E30 / B, F,C, I
Endosperm / Photosystem I P700 chlorophyll A apoprotein A1; psaA [Oryza sativa]
AAS46121.1
5e-41 / Saccharum hybrid cultivar SP-80-3280 chloroplast
AE009947.2
2e-153 / H/M EcoRI
305
E36 / B, F
Endosperm / Putative Thylakoid lumenal 21.5 kDa protein, chloroplast precursor [Oryza sativa]
XP_477427.1
4e-13 / Oryza sativa, mRNA
XM_477427.1
1e-34 / M EcoRI
366
F6-3 / F
Endosperm / Unknown protein [Arabidopsis thaliana]
NP_195542.1
3e-21 / Zea mays PCO098639 mRNA sequence
AY108605.1
2e-93 / EcoRI M
230
C2-1 / BF
Endosperm / Enolase [Zea mays]
CAA39454.1
7e-06 / Maize mRNA for enolase (2-phospho-D-glycerate hydrolase)
X55981.1
5e-33 / EcoRI M
267
C2-3 / B, F
Endosperm / Putative retroelement [Oryza sativa]
AAK53850.1
1e-14 / Zea mays genomic clone ZM15C05 sequence
AC116033.3
3e-09 / EcoRI M
234
H5-2 / E
Endosperm / Putative cytochrome P450-like protein [Sorghum bicolor]
AAL73972.1
2e-05 / Sorghum bicolor clone SBTXS_0032H17
AF466201.1
5e-36 / EcoRI H
250
E2 / E, F
Endosperm / Transketolase [Craterostigma plantagineum]
CAA86609.1
2e-33 / Oryza sativa, predicted mRNA
XM_471447.1
1e-55 / H/M,M EcoRI
282

E5 / BF
Endosperm / Putative sulfate transporter [Oryza sativa]
XP_470584.1
5e-07 / Oryza sativa chromosome 3
DP000009.1
8e-23 / M EcoRI
294

E12 / F
Endosperm / Putative respiratory burst oxidase protein E [Oryza sativa]
BAD36069.1
2e-13 / Oryza sativa genomic DNA, chromosome 9
AP008215.1
2e-29 / H/M EcoRI
301
E17 / B, F
Endosperm / C2 domain-containing protein-like [Oryza sativa]
BAD38184.1
6e-32 / Oryza sativa genomic DNA, chromosome 6
AP008212.1
8e-72 / EcoRI M
260
E19 / E, F, H, I
Endosperm / Methyl binding domain protein MBD109 [Zea mays]
AAM93219.1
1e-09 / Zea mays putative methyl-binding domain protein MBD115 mRNA
AY863051.1
2e-48 / H/M EcoRI
348
E28 / B, F
Endosperm / Photosystem II protein N; psbN [Oryza sativa]
AAS46138.1
1e-35 / Zea mays complete chloroplast genome
X86563.2
0.0 / H EcoRI
368
C2-2 / BF
Endosperm / Enolase [Zea mays]
CAA39454.1
7e-06 / Maize mRNA for enolase (2-phospho-D-glycerate hydrolase)
X55981.1
5e-33 / EcoRI M
257
E24 / H, I
Endosperm / Sorghum bicolor pathogenesis-related protein 10b (PR10) gene
AY751554.1
2e-168 / EcoRI M
323
A1-3 / F
Endosperm / Sorghum bicolor clone BAC 4681 ABA-induced gene
AY177892.1
2e-106 / EcoRI H/M
198
E26 / BF,CH,CI
Endosperm / Putative cytochrome P450-related protein [Oryza sativa]
NP_909822.1
3e-05 / H/M,H EcoRI
362
E41 / F
Endosperm / Sorghum bicolor Phytochelatin synthetase-like protein
AY188330.1
4e-10 / H EcoR I
441
E35 / F
Endosperm / Putative gypsy-type retrotransposon RIRE2 protein [Sorghum bicolor]
AAL75987.1
3e-05 / EcoRI M
406
E13 / F, H, I
Endosperm / Sorghum bicolor isolate vul2 internal transcribed spacer
DQ190421.1
2e-106 / EcoRI H/M
223
E29 / B
Endosperm / Sorghum bicolor ADP-glucose pyrophosphorylase subunit SH2
AF010283.1
4e-34 / EcoRI M
322
E31 / F
Endosperm / Oryza sativa genomic DNA, chromosome 10
AP008216.1
2e-23 / EcoRI H/M
269
E32 / A, E, F
Endosperm / Saccharum hybrid cultivar SP-80-3280 chloroplast
AE009947.2
2e-106 / EcoRI M,H/M
239
E40 / B, F
Endosperm / Oryza sativa tRNA-Ser (trnS), gene
M57903.1
9e-27 / H/M EcoRI
137
E44 / B
Endosperm / Sorghum bicolor BAC clone 110K5
AF124045.1
1e-12 / EcoRI M
272
A1-4 / B, F
Endosperm / Saccharum hybrid cultivar R570 microsatellite DNA, clone mSSCIR41
AJ401318.1
1e-24 / EcoRI M
243
A8 / A, F
Leaf / EcoRI H
312
A15 / AE, B
Leaf / EcoRI H/M
255
A31 / AE
Leaf / EcoRI H/M
265
A32 / AE,BF
Leaf / H/M EcoRI
229
A38 / AE,B
Leaf / EcoRI M
238
A42 / E
Leaf / H/M EcoRI
226
A43 / AE
Leaf / EcoRI M
160
C3 / C
Leaf / EcoRI H/M
279
C15 / I
Leaf / H EcoRI
237
C18 / CH, H, CI
Leaf / EcoRI H
224
C39 / CI
Leaf / EcoRI H
166
C43 / C, CH,CI
Leaf / EcoRI H/M
167
C51 / C, CH,CI
Leaf / EcoRI H
110
C53 / CH
Leaf / EcoRI H
223
F6-1 / CI
Leaf / EcoRI H/M
284
C52 / C, CH,CI
Leaf / EcoRI H/M
169
C28 / E, F, H, I
Leaf,
Endosperm / H EcoRI
135
C32 / E, F, H, I
Leaf,
Endosperm / H/M EcoRI
137
C33 / E, F, H, I
Leaf,
Endosperm / EcoRI H/M
135
B4-5 / CI
Leaf,
Endosperm / EcoRI H/M
132
E1 / B, BF
Endosperm / EcoRI H
344
E3 / E, F, H, I Endosperm / H/M EcoRI
387
E11 / E, I
Endosperm / EcoRI H
278
E25 / A, B, C
Endosperm / EcoRI H
477
E33 / BF
Endosperm / M EcoRI
215
E34 / H, I
Endosperm / EcoRI H
421
E37 / C, CI
Endosperm / M EcoRI
352
E39 / H
Endosperm / EcoRI M
140
E42 / E, I
Endosperm / EcoRI H,H/M
267
E43 / H
Endosperm / M EcoRI
347
E45 / E
Endosperm / EcoRI H
252
A1-5 / B
Endosperm / EcoRI M
217

A4-6 / C
Endosperm / EcoRI H
257
H5-4 / I
Endosperm / EcoRI H/M
212
H6-1 / H
Endosperm / EcoRI H
159