1

Supplementary Table 2. Sequences from the GenBank of taxa from selected order of the Dothideomycetes.

Taxonomic position and fungal taxa / GenBank Accession number
Original code / SSU / LSU / 5.8S / TEF1alpha
Botryosphaeriales
Botryosphaeria ribis / AFTOL 1232 / DQ678000 / DQ678085 / N/A / N/A
Botryosphaeria stevensii / AFTOL 1572 / DQ678012 / DQ678064 / N/A / N/A
Botryosphaeria tsugae / CBS 418.64 / AF271127 / DQ767655 / N/A / N/A
Guignardia bidwellii / AFTOL 1618 / DQ678034 / DQ678085 / N/A / N/A
Macrophomina phaseolina / AFTOL 1783 / DQ678037 / DQ678088 / N/A / N/A
Capnodiales
Capnodium salicinum / CBS 131.34 / DQ677997 / DQ678050 / N/A / N/A
Davidiella tassiana / AFTOL 1591 / DQ678022 / DQ678074 / N/A / N/A
Mycosphaerella punctiformis / AFTOL 942 / DQ471017 / DQ470968 / N/A / N/A
Scorias spongiosa / AFTOL 1594 / DQ678024 / DQ678075 / N/A / N/A
Dothideales
Delphinella strobiligena / AFTOL 1257 / DQ471029 / DQ470977 / N/A / N/A
Dothidea sambuci / AFTOL 274 / AY544722 / AY544681 / N/A / N/A
Dothidea insculpta / CBS 189.58 / DQ247810 / DQ247802 / N/A / N/A
Dothiora cannabinae / AFTOL 1359 / DQ479933 / DQ470984 / N/A / N/A
Stylodothis puccinioides / CBS 193.58 / AY016353 / AY004342 / N/A / N/A
Kirschsteiniotheliaceae
Dendryphiopsis atra / AFTOL 273 / DQ677996 / DQ678046 / N/A / N/A
Kirschsteiniothelia aethiops / CBS 109.53 / AY016344 / AY016361 / N/A / N/A
Kirschsteiniothelia lignicola / MFLUCC 10.0105 / HQ441569 / HQ441568 / N/A / N/A
Myriangiales
Elsinoe phaseoli / AFTOL 1855 / DQ678042 / DQ678095 / N/A / N/A
Elsinoe veneta / AFTOL 1853 / DQ767651 / DQ767658 / N/A / N/A
Myriangium duriaei / CBS 260.36 / AY016347 / DQ678059 / N/A / N/A
Myriangium hispanicum / CBS 247.33 / GU296180 / GU301854 / N/A / N/A
Aigialaceae
Aigialus grandis / BCC 18419 / GU479738 / GU479774 / N/A / N/A
Aigialus mangrovis / BCC 33563 / GU479741 / GU479776 / N/A / N/A
Aigialus parvus / BCC 32558 / GU479743 / GU479778 / N/A / N/A

Table 2 (continued)

Taxonomic position and fungal taxa / GenBank Accession number
Original code / SSU / LSU / 5.8S / TEF1alpha
Aigialus rhizophorae / BCC 33572 / GU479745 / GU479780 / N/A / N/A
Amniculicolaceae
Amniculicola immersa / CBS 123083 / GU456295 / FJ795498 / N/A / N/A
Amniculicola parva / CBS 123092 / GU296134 / FJ795497 / N/A / N/A
Murispora rubicunda / IFRD 2017 / GU456308 / FJ795507 / N/A / N/A
Deitschiaceae
Delitschia winteri / AFTOL 1599 / DQ678026 / DQ678077 / N/A / N/A
Didymellaceae
Ascochyta pisi / CBS 126.54 / DQ678018 / DQ678070 / N/A / N/A
Didymella cucurbitacearum / IMI 373225 / AY293779 / AY293792 / N/A / N/A
Monascostroma innumerosum / CBS 345.50 / GU296179 / GU301850 / N/A / N/A
Phoma herbarum / CBS 615.75 / EU754087 / EU754186 / N/A / N/A
Hypsostromataceae
Hypsostroma caimitalense / GKM 1165 / N/A / GU385180 / N/A / N/A
Hypsostroma saxicola / SMH 5005 / N/A / GU385181 / N/A / N/A
Lentitheciaceae
Katumotoa bambusicola / MAFF 239641 / AB524454 / AB524595 / N/A / N/A
Keissleriella cladophila / CBS 104.55 / GU296155 / GU301822 / N/A / N/A
Lentithecium aquaticum / CBS 123099 / GU296156 / GU301823 / N/A / N/A
Lentithecium arundinaceum / CBS 619.86 / DQ813513 / DQ813509 / N/A / N/A
Lentithecium phragmiticola / CBS 110446 / DQ813512 / DQ813510 / N/A / N/A
Stagonospora macropycnidia / CBS 114202 / GU296198 / GU301873 / N/A / N/A
Leptosphaeriaceae
Leptosphaeria doliolum / CBS 505.75 / GU296159 / FJ795499 / N/A / N/A
Leptosphaeria maculans / AFTOL 277 / DQ470993 / DQ470946 / N/A / N/A
Neophaeosphaeria filamentosa / CBS 102202 / GQ387516 / GQ387577 / N/A / N/A
Phoma heteromorphospora / CBS 115.96 / EU754089 / EU754188 / N/A / N/A
Lindgomycetaceae
Lindgomyces breviappendiculatus / KT 1399 / AB521734 / AB521749 / N/A / N/A
Lindgomyces cinctosporae / R 56.3 / GU266238 / GU266245 / N/A / N/A
Lindgomyces ingoldianus / KH 100 / AB521720 / AB521737 / N/A / N/A

Table 2 (continued)

Taxonomic position and fungal taxa / GenBank Accession number
Original code / SSU / LSU / 5.8S / TEF1alpha
Lindgomyces rotundus / KT1 096 / AB521723 / AB521740 / N/A / N/A
Semimassariosphaeria typhicola / KT 667 / AB521729 / FJ795504 / N/A / N/A
Lophiostomataceae
Lophiostoma bipolaris / HKUCC 1053 / AF164365 / N/A / N/A / N/A
Lophiostoma caulium / CBS 623.86 / FJ795479 / FJ795436 / N/A / N/A
Lophiostoma compressum / IFRD 2014 / FJ795480 / FJ795437 / N/A / N/A
Lophiostoma crenatum / AFTOL 1581 / DQ678017 / DQ678069 / N/A / N/A
Lophiostoma fuckelii / CBS 101952 / FJ795496 / DQ399531 / N/A / N/A
Lophiostoma scabridisporum / BCC 22836 / GQ925832 / GQ925845 / N/A / N/A
Lophiostoma semiliberum / CBS 626.86 / FJ795484 / FJ795441 / N/A / N/A
Lophiostoma viridarium / IFRDCC 2081 / FJ795486 / FJ795443 / N/A / N/A
Trematosphaeria hydrophila / IFRD 2037 / GU261721 / GU261721 / N/A / N/A
Massarinaceae
Aquaticheirospora lignicola / RK 2006a / AY736377 / AY736378 / N/A / N/A
Massarina eburnea / CBS 473.64 / AF164367 / N/A / AF383959 / N/A
Massarina cisti / CBS 266.62 / FJ795490 / FJ795447 / N/A / N/A
Neottiosporina paspali / CBS 331.37 / EU754073 / EU754172 / N/A / N/A
Melanommataceae
Herpotrichia diffusa / CBS 250.62 / DQ678019 / DQ678071 / N/A / N/A
Herpotrichia juniperi / CBS 200.31 / DQ678029 / DQ678080 / N/A / N/A
Melanomma pulvispyrius / CBS 124080 / GU456302 / GU456323 / N/A / N/A
Pleomassaria siparia / CBS 279.74 / DQ678027 / DQ678078 / N/A / N/A
Montagnulaceae
Bimuria novaezelandiae / CBS 107.79 / AY016338 / AY016356 / N/A / N/A
Didymocrea sadasivanii / CBS 438.65 / DQ384066 / DQ384103 / N/A / N/A
Kalmusia scabrispora / NBRC 106237 / AB524453 / AB524594 / N/A / N/A
Karstenula rhodostoma / CBS 690.94 / GU296154 / GU301821 / N/A / N/A
Letendraea helminthicola / CBS 844.85 / AY016345 / AY016362 / N/A / N/A
Letendraea padouk / CBS 485.70 / GU296162 / AY849951 / N/A / N/A
Montagnula opulenta / CBS 168.34 / AF164370 / DQ678086 / N/A / N/A
Phaeodothis winteri / CBS 182.58 / DQ678021 / DQ678073 / N/A / N/A

Table 2 (continued)

Taxonomic position and fungal taxa / GenBank Accession number
Original code / SSU / LSU / 5.8S / TEF1alpha
Tremateia halophila / JK 5517J / GU296201 / N/A / N/A / N/A
Helicascus kanaloanus / A 237 / AF053729 / N/A / N/A / N/A
Morosphaeriaceae
Helicascus nypae / BCC 36751 / GU479754 / GU479788 / N/A / N/A
Kirschsteiniothelia elaterascus / HKUCC 7769 / GU053727 / AY787934 / N/A / N/A
Morosphaeria velataspora / BCC 17058 / GQ925840 / GQ925851 / N/A / N/A
Phaeosphaeriaceae
Loratospora aestuarii / JK 5535B / GU296168 / GU301838 / N/A / N/A
Phaeosphaeria avenaria / AFTOL 280 / AY544725 / AY544684 / N/A / N/A
Phaeosphaeria eustoma / AFTOL 1570 / DQ678011 / DQ678063 / N/A / N/A
Phaeosphaeriopsis musae / CBS 120026 / GU296186 / GU301862 / N/A / N/A
Phoma radicina / CBS 111.79 / EU754092 / EU754191 / N/A / N/A
Setomelanomma holmii / CBS 110217 / GU296196 / GU301871 / N/A / N/A
Pleosporaceae
Alternaria alternata / CBS 916.96 / DQ678031 / DQ678082 / N/A / N/A
Alternaria maritima / CBS 126.60 / GU456294 / GU456317 / N/A / N/A
Cochliobolus heterostrophus / CBS 134.39 / AY544727 / AY544645 / N/A / N/A
Cochliobolus sativus / DAOM 226212 / DQ677995 / DQ678045 / N/A / N/A
Decorospora gaudefroyi / CBS 322.63 / DQ677995 / N/A / N/A / N/A
Dendryphiella arenaria / CBS 181.85 / DQ471022 / DQ470971 / N/A / N/A
Dendryphiella salina / CY 3140 / EU848586 / EU848587 / N/A / N/A
Pleospora herbarum / CBS 191.86 / DQ247812 / DQ247804 / N/A / N/A
Pyrenophora phaeocomes / DAOM 222769 / DQ499595 / DQ499596 / N/A / N/A
Sporormiaceae
Preussia funiculata / CBS 659.74 / GU296187 / GU301864 / N/A / N/A
Preussia terricola / DAOM 230091 / AY544726 / AY544686 / N/A / N/A
Sporormiella minima / CBS 524.50 / DQ678003 / DQ678056 / N/A / N/A
Westerdykella cylindrica / CBS 454.72 / AY016355 / AY004343 / N/A / N/A
Testudinaceae
Neotestudina rosatii / CBS 690 82 / DQ384069 / DQ384197 / N/A / N/A
Ulospora bilgramii / AFTOL 1598 / DQ678025 / DQ678076 / N/A / N/A

Table 2 (continued)

Taxonomic position and fungal taxa / GenBank Accession number
Original code / SSU / LSU / 5.8S / TEF1alpha
Verruculina enalia / BCC 18401 / GU479770 / GU479802 / N/A / N/A
Tetraplosphaeriaceae
Polyplosphaeria fusca / MAFF 239685 / AB524463 / AB524604 / N/A / N/A
Pseudotetraploa curviappendiculata / MAFF 239495 / AB524467 / AB524608 / N/A / N/A
Quadricrura septentrionalis / CBS 125429 / AB524474 / AB524615 / N/A / N/A
Tetraplosphaeria sasicola / MAFF 239677 / AB524490 / AB524631 / N/A / N/A
Triplosphaeria maxima / MAFF 239682 / AB524496 / AB524637 / N/A / N/A
Trematosphaeriaceae
Falciformispora lignatilis / BCC 21117 / GU371834 / GU371826 / N/A / N/A
Halomassarina thalassiae / BCC 17055 / GQ925843 / GQ925850 / N/A / N/A
Trematosphaeria pertusa / CBS 122371 / FJ201993 / FJ291992 / N/A / N/A
Xylomyces elegans / H801 / GU266234 / N/A / N/A / N/A
Mytilinidiales
Lophium mytilinum / AFTOL 1609 / DQ678030 / DQ678081 / N/A / N/A
Mytilinidion californicum / EB 0385 / GU323186 / GU323208 / N/A / N/A
Mytilinidion mytilinellum / CBS 303.34 / FJ161144 / FJ161184 / N/A / N/A
Hysteriales
Gloniopsis praelonga / CBS 112415 / FJ161134 / FJ161173 / N/A / N/A
Psiloglonium clavisporum / CBS 123339 / FJ161157 / FJ167526 / N/A / N/A
Arthoniomycetes (Outgroups)
Roccella fuciformis / AFTOL 126 / AY584678 / AY584654 / N/A / N/A
Schismatomma decolorans / DUKE 0047570 / AY548809 / AY548815 / N/A / N/A

Not applicable with the prefix N/A, information in a certain field on a table is not provided