Supplementary Table 2 List of Other Sub-Cellular Proteins Detected in the Chloroplast Fractions

Supplementary Table 2 List of other sub-cellular proteins detected in the chloroplast fractions.

Acc. No. / Protein description / Subcellular location using WolF PSORT
and PSORT / Protein Score / Molecular Weight / Peptide Matches / Sequence
Coverage (%)
P20904 / Actin / Cytoskeleton / 36 / 19880 / 2 / 7.4
P02581 / Actin-1 / Cytoskeleton / 45 / 17618 / 4 / 25.6
P10671 / Actin-1/3 / Cytoskeleton / 172 / 15700 / 6 / 37.5
P30172 / Actin-100 / Cytoskeleton / 50 / 15367 / 3 / 32.6
P30173 / Actin-101 / Cytoskeleton / 50 / 15319 / 2 / 31.9
P93376 / Actin-103 / Cytoskeleton / 56 / 17047 / 2 / 16.6
P93375 / Actin-104 / Cytoskeleton / 73 / 17511 / 4 / 21.4
P53496 / Actin-11 / Cytoskeleton / 85 / 15301 / 8 / 44.4
P0C539 / Actin-2 / Cytoskeleton / 104 / 19433 / 2 / 14.9
P53494 / Actin-4 / Cytoskeleton / 282 / 16961 / 10 / 28.8
Q96482 / Actin-41 / Cytoskeleton / 65 / 15361 / 5 / 23.9
P93587 / Actin-42 / Cytoskeleton / 45 / 26423 / 3 / 10.2
P93586 / Actin-46 / Cytoskeleton / 35 / 28757 / 5 / 17.3
Q96483 / Actin-51 / Cytoskeleton / 50 / 10746 / 3 / 24.7
P93374 / Actin-53 / Cytoskeleton / 124 / 10757 / 2 / 17.2
P30167 / Actin-58 / Cytoskeleton / 35 / 37464 / 4 / 25.4
P0C540 / Actin-7 / Cytoskeleton / 35 / 41836 / 4 / 15.6
P30168 / Actin-71 / Cytoskeleton / 44 / 15716 / 5 / 14.6
P30169 / Actin-75 / Cytoskeleton / 65 / 10084 / 5 / 36.5
P93584 / Actin-82 / Cytoskeleton / 90 / 15760 / 2 / 19
P93371 / Actin-93 / Cytoskeleton / 229 / 10739 / 7 / 51.6
Q9LZG0 / Adenosine kinase 2 / Cytoskeleton / 72 / 17430 / 2 / 14.9
O49169 / Elongation factor 1-alpha / Cytoskeleton / 37 / 85650 / 9 / 8.1
Q8RYC2 / Putative actin-5 / Cytoskeleton / 29 / 49669 / 6 / 29.3
Q7SIC9 / Transketolase, chloroplastic / Cytoskeleton / 29 / 49509 / 6 / 29.6
P93373 / Actin-54 / Cytoskeleton / 29 / 49506 / 6 / 29.1
Q96293 / Actin-8 / Cytoskeleton / 32 / 30057 / 3 / 20.7
P81229 / Actin-79 / Cytoskeleton / 30 / 37168 / 6 / 33.3
P46258 / Actin-3 / Cytoskeleton / 36 / 140949 / 4 / 4.4
P81228 / Actin-66 / Cytoskeleton / 31 / 105087 / 2 / 4.7
P30171 / Actin-97 / Cytoskeleton / 58 / 41608 / 6 / 25.5
P53491 / Actin / Cytoskeleton / 58 / 37172 / 9 / 36.9
P38076 / Cysteine synthase / Cytoskeleton / 58 / 41616 / 9 / 36.1
A9PDZ7 / S-adenosylmethionine synthetase 2 / Cytoskeleton / 415 / 59634 / 15 / 29.9
A7PRJ6 / S-adenosylmethionine synthetase 4 / Cytoskeleton / 60 / 13016 / 2 / 18.6
P43395 / ATP synthase subunit beta, mitochondrial / Cytoskeleton / 69 / 39226 / 4 / 18.8
P93585 / Actin-65 / Cytoskeleton / 69 / 39144 / 4 / 17.1
A9P822 / S-adenylmethionine synthetase 1 / Cytoskeleton / 112 / 39264 / 5 / 10.6
Q9SBQ5 / S-adenylmethionine synthetase 2 / Cytoskeleton / 43 / 47381 / 5 / 21.2
Q4LB22 / S-adenylmethionine synthetase 3 / Cytoskeleton / 120 / 71182 / 5 / 11.2
A7Q0V4 / S-adenylmethionine synthetase 5 / Cytoskeleton / 126 / 71342 / 5 / 13
Q9ZUT9 / 40S ribomal protein S5-1 / Cytoskeleton / 31 / 81839 / 3 / 4.5
Q9LEL5 / 3~-hydroxy-N-methyl-(S)-coclaurine 4~-O-methyltransferase / Cytoskeleton / 40 / 185038 / 12 / 9.7
P12298 / Glucose-1-phosphate adenylyltransferase large subunit / Cytoskeleton / 105 / 16216 / 3 / 24
O50003 / 60S ribosomal protein L12 / Cytoskeleton / 105 / 16547 / 2 / 20.9
P49210 / 60S ribosomal protein L9 / Cytosol / 39 / 97438 / 4 / 4.5
A7M954 / ATP synthase subunit a, plastid / Cytosol / 78 / 28887 / 3 / 12.4
A7M8Y9 / ATP synthase subunit alpha, plastid / Cytosol / 30 / 52896 / 5 / 18
O03085 / ATP synthase subunit beta, chloroplastic / Cytosol / 31 / 109684 / 4 / 4.3
P29685 / ATP synthase subunit beta, mitochondrial / Cytosol / 44 / 30627 / 3 / 20.6
P10707 / Chlorophyll a-b binding protein 1D / Cytosol / 44 / 30570 / 3 / 15.4
P36183 / Endoplasmin homolog / Cytosol / 38 / 34840 / 2 / 5.3
P51118 / Glutamine synthetase cytosolic isozyme 1 / Cytosol / 36 / 39484 / 3 / 26.3
P13564 / Glutamine synthetase leaf isozyme, chloroplastic / Cytosol / 55 / 53125 / 3 / 12
P32289 / Glutamine synthetase nodule isozyme / Cytosol / 52 / 34093 / 2 / 10.5
P04770 / Glutamine synthetase PR-1 / Cytosol / 29 / 62800 / 2 / 6.8
P38562 / Glutamine synthetase root isozyme 4 / Cytosol / 39 / 26103 / 2 / 12
P38563 / Glutamine synthetase root isozyme 5 / Cytosol / 36 / 67169 / 5 / 20.1
P08735 / Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 1 / Cytosol / 46 / 68199 / 2 / 3.9
Q43247 / Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 / Cytosol / 69 / 40316 / 2 / 7.9
P11143 / Heat shock 70 kDa protein / Cytosol / 77 / 42896 / 4 / 18.3
P24629 / Heat shock cognate 70 kDa protein 1 / Cytosol / 77 / 42904 / 3 / 17.8
P27806 / Histone H1 / Cytosol / 64 / 60869 / 3 / 9.7
P84718 / Putative oxygen-evolving enhancer protein 1 / Cytosol / 91 / 90284 / 6 / 11.5
P05698 / Ribulose bisphosphate carboxylase large chain / Cytosol / 91 / 89902 / 6 / 11.9
Q31730 / Ribulose bisphosphate carboxylase large chain / Cytosol / 148 / 16831 / 3 / 18.7
Q43831 / RuBisC / Cytosol / 52 / 18771 / 2 / 17.6
Q9XET4 / 40S ribosomal protein S7 / Cytosol / 131 / 59123 / 4 / 11.7
Q9ZNV5 / Protein CENTR / Cytosol / 154 / 18999 / 5 / 31.8
P0C489 / 30S ribosomal protein S7, chloroplastic / Cytosol / 33 / 56811 / 6 / 14.8
A1E9M6 / 30S ribosomal protein S8, chloroplastic / Cytosol / 37 / 37810 / 2 / 10.2
Q9S9P1 / 40S ribosomal protein S12-1 / Cytosol / 73 / 46503 / 4 / 27.8
Q9SKZ3 / 40S ribosomal protein S12-2 / Cytosol / 111 / 29709 / 2 / 15.3
Q3BAN9 / Photosystem I assembly protein ycf3 / Cytosol / 48 / 37240 / 4 / 14.8
P56344 / Probable sulfate/thiosulfate import ATP-binding protein cysA / Cytosol / 87 / 41546 / 7 / 31
A1E9H0 / 30S ribosomal protein S19, chloroplastic / Cytosol / 36 / 47325 / 4 / 20.1
P0C449 / 50S ribosomal protein L23, chloroplastic / Cytosol / 36 / 47360 / 2 / 7.2
A1E9Q6 / 30S ribosomal protein S16, chloroplastic / Cytosol / 85 / 38570 / 3 / 11
Q9SF35 / 40S ribosomal protein S23-1 / Cytosol / 85 / 38883 / 3 / 9.1
A1EA51 / 50S ribosomal protein L23-B, chloroplastic / Cytosol / 308 / 39271 / 10 / 12.6
Q96460 / Tubulin alpha-2 chain / Cytosol / 59 / 51357 / 3 / 14.6
P29510 / Tubulin alpha-2/alpha-4 chain / Cytosol / 403 / 16859 / 6 / 48.7
P29511 / Tubulin alpha-6 chain / Cytosol / 55 / 47759 / 2 / 6.5
A0A398 / 50S ribosomal protein L2-B, chloroplastic / Cytosol / 31 / 434125 / 14 / 5.7
Q9LX99 / Geminivirus Rep-interacting motor protein / Cytosol / 34 / 39181 / 2 / 6.7
P38559 / Glutamine synthetase root isozyme 1 / Cytosol / 71 / 35782 / 2 / 11.4
P38561 / Glutamine synthetase root isozyme 3 / Cytosol / 41 / 54191 / 5 / 17.7
P07694 / Glutamine synthetase root isozyme A / Cytosol / 37 / 203126 / 6 / 6.2
P09189 / Heat shock cognate 70 kDa protein / Cytosol / 30 / 57256 / 3 / 8.9
P22954 / Heat shock cognate 70 kDa protein 2 / Cytosol / 36 / 35675 / 2 / 5
Q08277 / Heat shock protein 82 / Cytosol / 33 / 94844 / 3 / 5.8
Q76I22 / Lipoxygenase 1 / Cytosol / 69 / 24716 / 3 / 14.1
P46274 / Mitochondrial outer membrane porin / Cytosol / 69 / 8969 / 3 / 43.8
Q5GM68 / Phosphoenolpyruvate carboxylase 2 / Cytosol / 69 / 28577 / 4 / 20.9
Q9LK36 / Adenosylhomocysteinase 2 / Cytosol / 33 / 56423 / 5 / 20.4
Q9LRR9 / Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 / Cytosol / 127 / 35137 / 6 / 23.4
O65572 / Carotenoid 9,10(9~,10~)-cleavage dioxygenase 1 / Cytosol / 32 / 49379 / 3 / 10.6
Q9SCN8 / Cell division control protein 48 homolog D / Cytosol / 32 / 44679 / 6 / 22.5
Q9LZF6 / Cell division control protein 48 homolog E / Cytosol / 54 / 15902 / 2 / 13.1
P0C338 / NAD(P)H-quinone oxidoreductase subunit J, chloroplastic / Cytosol / 85 / 31003 / 3 / 30
P54778 / 26S protease regulatory subunit 6B homolog / Cytosol / 71 / 14450 / 2 / 32.1
P49397 / 40S ribosomal protein S3a / Cytosol / 94 / 37911 / 5 / 16.6
O04300 / Alpha-1,4-glucan-protein synthase [UDP-forming] / Cytosol / 65 / 32080 / 5 / 31.4
Q6YW46 / Elongation factor 1-gamma 2 / Cytosol / 57 / 33887 / 5 / 17
Q5Z627 / Elongation factor 1-gamma 3 / Cytosol / 53 / 32271 / 3 / 11.4
Q9LVI8 / Glutamine synthetase cytosolic isozyme 1-3 / Cytosol / 54 / 42194 / 3 / 15.4
Q8GXW5 / Glutamine synthetase cytosolic isozyme 1-5 / Cytosol / 61 / 23073 / 2 / 11.1
Q43066 / Glutamine synthetase root isozyme B / Cytosol / 66 / 16417 / 2 / 20.1
Q84ZC0 / Probable V-type proton ATPase subunit H / Cytosol / 133 / 16497 / 4 / 25.7
P52712 / Serine carboxypeptidase-like / Cytosol / 133 / 16478 / 4 / 22.9
P04771 / Glutamine synthetase PR-2 / Cytosol / 151 / 25465 / 8 / 33
P85938 / 14-3-3-like protein 1 / Cytosol / 58 / 63658 / 3 / 8.1
Q9TJQ8 / Elongation factor Tu, plastid / Cytosol / 68 / 61242 / 6 / 14.2
Q93XM7 / Mitochondrial carnitine/acylcarnitine carrier-like protein / Cytosol / 280 / 175063 / 19 / 18.1
A5BUU4 / 40S ribosomal protein SA / Cytosol / 54 / 42442 / 5 / 22.8
Q08682 / 40S ribosomal protein Sa-1 / Cytosol / 43 / 113703 / 8 / 15.3
P81406 / NADP-dependent glyceraldehyde-3-phphate dehydrogenase / Cytosol / 55 / 52970 / 4 / 11.9
A1E9V0 / Photystem II CP47 chlorophyll apoprotein / Cytosol / 160 / 83006 / 5 / 6.7
A0A330 / Photystem II D2 protein / Cytosol / 125 / 29250 / 4 / 27.5
P55939 / Phpholipase D alpha 2 / Cytosol / 657 / 56070 / 21 / 28.5
A0ZZ43 / Ribule bisphphate carboxylase large chain / Cytosol / 389 / 39538 / 12 / 33.1
P49299 / Citrate synthase, glyoxysomal / Cytosol / 189 / 38754 / 5 / 16.7
Q42472 / Glutamate decarboxylase 2 / Cytosol / 32 / 92004 / 4 / 8.1
P14654 / Glutamine synthetase cytolic isozyme 1-2 / Cytosol / 636 / 53099 / 27 / 35
O82560 / Glutamine synthetase cytolic isozyme 2 / Cytosol / 99 / 48313 / 4 / 20.7
Q9AT63 / Probable pyridoxal biynthesis protein PDX1 / Cytosol / 42 / 18865 / 2 / 6.3
Q8L940 / Pyridoxal biynthesis protein PDX1.3 / Cytosol / 136 / 56724 / 5 / 12.8
O81146 / Proteasome subunit alpha type-6-A / Cytosol / 94 / 56105 / 5 / 19.2
O81147 / Proteasome subunit alpha type-6-B / Cytosol / 70 / 39234 / 3 / 13.7
O03066 / Photystem I reaction center subunit II, chloroplastic / Cytosol / 32 / 39184 / 3 / 14
P32869 / Photystem I reaction center subunit II-1, chloroplastic / Cytosol / 97 / 36901 / 2 / 14.8
P50883 / 60S ribomal protein L12-1 / Cytosol / 174 / 112959 / 15 / 21.3
Q8S857 / Probable histone H2A variant 2 / Cytosol / 59 / 123515 / 7 / 11.7
Q5EF31 / Profilin / Cytosol / 32 / 100576 / 6 / 11.5
B2XWR0 / 50S ribomal protein L14, chloroplastic / Cytosol / 42 / 108350 / 4 / 6.5
A4GGE7 / Photystem I iron-sulfur center / Cytosol / 75 / 136783 / 7 / 10.7
Q9SCM3 / 40S ribomal protein S2-4 / Cytosol / 65 / 53402 / 6 / 16.9
Q3BAJ9 / 50S ribomal protein L16, chloroplastic / Cytosol / 67 / 38428 / 6 / 17.5
P46286 / 60S ribomal protein L8-1 / Cytosol / 67 / 38422 / 4 / 20.2
Q4FG72 / 30S ribomal protein S3, chloroplastic / Cytosol / 80 / 36519 / 2 / 7.4
P49688 / 40S ribomal protein S2-3 / Cytosol / 38 / 65157 / 2 / 7.1
Q06R66 / 50S ribomal protein L2, chloroplastic / Cytosol / 41 / 63944 / 6 / 14
B0YPQ8 / 30S ribomal protein S11, plastid / Cytosol / 31 / 74350 / 4 / 12.4
A8IB25 / 40S ribomal protein SA / Cytosol / 36 / 75248 / 6 / 13.5
Q8H173 / 40S ribomal protein Sa-2 / Cytosol / 46 / 19138 / 5 / 33.5
Q1ACP2 / 30S ribomal protein S7, chloroplastic / Cytosol / 61 / 51841 / 4
P46257 / Fructe-bisphphate aldolase, cytoplasmic isozyme 2 / Cytosol / 54 / 24453 / 3 / 19.9
Q8VXQ9 / Glyceraldehyde-3-phphate dehydrogenase A, chloroplastic / Cytosol / 38 / 41576 / 3 / 12.6
O65731 / 40S ribomal protein S5 / Cytosol / 35 / 48132 / 3 / 15.5
P60314 / DNA-directed RNA polymerase subunit alpha / Cytosol / 52 / 43577 / 5 / 20.9
A8HYU5 / S-adenylmethionine synthetase / Cytosol / 112 / 38839 / 5 / 24
P49692 / 60S ribomal protein L7a-1 / Cytosol / 196 / 42096 / 10 / 37.9
Q0DK10 / 60S ribomal protein L11 / Cytosol / 43 / 4172 / 2 / 65.7
O65743 / 60S ribomal protein L24 / Cytosol / 57 / 49596 / 3 / 8.8
P38666 / 60S ribomal protein L24-2 / Cytosol / 63 / 42054 / 4 / 15
Q05737 / GTP-binding protein YPTM2 / Cytosol / 136 / 41778 / 6 / 30.1
P51061 / Phphoenolpyruvate carboxylase / Cytosol / 98 / 39176 / 4 / 18.8
P93227 / Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha / Cytosol / 95 / 44076 / 3 / 8.4
P19950 / 40S ribomal protein S14 / Cytosol / 176 / 44979 / 7 / 17.4
P49100 / Cytochrome b5 / Cytosol / 94 / 29190 / 2 / 11.2
Q9FFT9 / DEAD-box ATP-dependent RNA helicase 32 / Cytosol / 128 / 29618 / 3 / 18.8
O23628 / Histone H2A variant 1 / Cytosol / 39 / 18871 / 3 / 31.8
A2T334 / Photystem I assembly protein ycf3 / Cytosol / 44 / 32924 / 2 / 15.9
Q9T0H7 / Putative histone H2A.8 / Cytosol / 44 / 33195 / 2 / 11.3
Q9AT34 / 40S ribomal protein S15a / Cytosol / 41 / 27277 / 3 / 12.6
Q9LX88 / 40S ribomal protein S15a-4 / Cytosol / 41 / 27333 / 4 / 22.4
P52866 / 60S ribomal protein L36 / Cytosol / 29 / 13329 / 2 / 22.7
P12223 / Putative membrane protein ycf1 C-terminal part / Cytosol / 69 / 24409 / 7 / 36.1
Q7YJT8 / 30S ribomal protein S19, chloroplastic / Cytosol / 200 / 21919 / 7 / 21
Q9SR73 / 40S ribomal protein S28-1 / Cytosol / 51 / 22584 / 7 / 21.2
Q9SXX7 / Cytochrome c oxidase subunit 5C / Cytosol / 100 / 21753 / 2 / 23.7
P0C030 / NEDD8-like protein RUB1 / Cytosol / 30 / 17931 / 4 / 30.7
Q0IP28 / Laccase-25 / Cytosol / 52 / 16391 / 3 / 37.1
P42210 / Phytepsin / Endoplasmic reticulum / 81 / 9142 / 3 / 35.4
P29357 / Chloroplast envelope membrane 70 kDa heat shock-related protein / Extracellular / 70 / 17936 / 16 / 45.5
Q9LRL0 / Putative cysteine-rich repeat secretory protein 27 / Extracellular / 83 / 12386 / 2 / 28.1
P81664 / Phphoribulokinase / Extracellular / 62 / 14603 / 2 / 12.2
Q00782 / Proteinase inhibitor type-2 / Extracellular / 31 / 34872 / 2 / 12.5
B0YPN7 / ATP synthase subunit beta, plastid / Mitochondria / 36 / 14130 / 3 / 29.8
Q9ZUU3 / Pentatricopeptide repeat-containing protein At2g37230 / Mitochondria / 79 / 13702 / 3 / 27.9
P83483 / ATP synthase subunit beta-1, mitochondrial / Mitochondria / 127 / 14277 / 2 / 16
Q42290 / Probable mitochondrial-processing peptidase subunit beta / Mitochondria / 49 / 18203 / 2 / 24.6
Q9ZP06 / Malate dehydrogenase 1, mitochondrial / Mitochondria / 86 / 48723 / 7 / 23.3
P34899 / Serine hydroxymethyltransferase, mitochondrial / Mitochondria / 86 / 50669 / 10 / 30.7
P29308 / 14-3-3-like protein / Mitochondria / 134 / 8974 / 3 / 51.9
Q9ZT91 / Elongation factor Tu, mitochondrial / Mitochondria / 50 / 51877 / 3 / 13.5
P29197 / Chaperonin CPN60, mitochondrial / Mitochondria / 66 / 18837 / 4 / 14.3
O80988 / Glycine dehydrogenase [decarboxylating] 1, mitochondrial / Mitochondria / 52 / 13719 / 5 / 77.9
Q9LHY9 / B3 domain-containing protein 06g0112300 / Mitochondria / 42 / 21042 / 2 / 13.2
P49361 / Glycine dehydrogenase [decarboxylating] A, mitochondrial / Mitochondria / 80 / 30097 / 3 / 13
O23138 / Probable cytochrome c At1g22840 / Mitochondria / 54 / 15244 / 2 / 27.4
P36397 / ADP-ribylation factor 1 / Mitochondria / 33 / 27842 / 2 / 19
P83484 / ATP synthase subunit beta-2, mitochondrial / Mitochondria / 62 / 30578 / 2 / 18.5
Q8LAH8 / Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial / Mitochondria / 33 / 49867 / 2 / 4.4
P00068 / Cytochrome c / Mitochondria / 41 / 24158 / 2 / 11.8
P02276 / Histone H2A.2.1 / Nuclear / 40 / 33775 / 2 / 5.7
A2WWU2 / Histone H2B.11 / Nuclear / 36 / 25088 / 2 / 12.8
P54348 / Histone H2B.5 / Nuclear / 91 / 30859 / 2 / 8.1
P68427 / Histone H3.2 / Nuclear / 42 / 29968 / 2 / 10.9
Q8H7Y8 / Probable histone H2A variant 1 / Nuclear / 56 / 30978 / 2 / 11.3
Q42484 / Disease resistance protein RPS2 / Nuclear / 60 / 30673 / 2 / 12.2
P93354 / Histone H2B / Nuclear / 31 / 17120 / 4 / 33.5
Q9LZ45 / Histone H2B.9 / Nuclear / 34 / 865 / 2 / 100
Q05761 / 40S ribosomal protein S13 / Nuclear / 57 / 1158 / 2 / 100
Q9AT35 / 60S ribosomal protein L23a / Nuclear / 29 / 14268 / 3 / 24.6
Q6LCW8 / Histone H3 type 2 / Nuclear / 50 / 30686 / 2 / 5.4
A2Y5G8 / Probable histone H2A.4 / Nuclear / 50 / 30634 / 2 / 8.2
Q1SU99 / Probable histone H2B.3 / Nuclear / 59 / 30613 / 3 / 24.1
Q9FXI7 / Histone H3-like 2 / Nuclear / 77 / 4458 / 2 / 97.4
Q8LD46 / 60S ribosomal protein L23a-1 / Nuclear / 33 / 32264 / 5 / 24.8
Q8W4N3 / Ubiquitin carboxyl-terminal hydrolase 2 / Nuclear / 34 / 17886 / 2 / 12.2
Q9C5X9 / Histone acetyltransferase HAC1 / Nuclear / 40 / 38467 / 3 / 20.3
P05621 / Histone H2B.2 / Nuclear / 40 / 33553 / 3 / 8.3
P54346 / Histone H2B.3 / Nuclear / 63 / 82457 / 2 / 3.5
Q9C6M9 / Putative CCR4-associated factor 1 homolog 4 / Nuclear / 62 / 21682 / 2 / 10.3
Q2QQA3 / MADS-box transcription factor 20 / Nuclear / 34 / 80019 / 3 / 9.8
P16868 / Histone H2B.4 / Nuclear / 90 / 22005 / 3 / 16.2
Q84Y18 / CAX-interacting protein 4 / Nuclear / 42 / 56195 / 4 / 2.8
Q06SH2 / Uncharacterized membrane protein ycf78 / Nuclear / 48 / 38397 / 2 / 6.9
Q8S3F1 / Transcription factor NAI1 / Nuclear / 73 / 2639 / 2 / 100
Q9FPS4 / Ubiquitin carboxyl-terminal hydrolase 23 / Nuclear / 42 / 42556 / 2 / 8.5
Q3C1J3 / Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta / Nuclear / 42 / 43186 / 2 / 11.5
Q9LZT0 / Histone H2B.7 / Nuclear / 42 / 42566 / 3 / 13.8
Q84MP7 / Probable histone H2A variant 3 / Nuclear / 42 / 42739 / 2 / 11.4
P29546 / Elongation factor 1-beta / Nuclear / 42 / 42766 / 5 / 22.3
P40280 / Histone H2A / Nuclear / 35 / 135523 / 3 / 3.3
A2XF66 / Histone H2B.1 / Nuclear / 31 / 120221 / 5 / 9.4
A2WKS5 / Histone H2B.8 / Nuclear / 48 / 20511 / 2 / 10.6
A1E9S8 / NAD(P)H-quinone oxidoreductase subunit K, chloroplastic / Nuclear / 29 / 38603 / 4 / 16.2
Q7XSA2 / Protein argonaute 1B / Nuclear / 44 / 29111 / 2 / 7.8
Q9SDG8 / Protein argonaute 4A / Nuclear / 37 / 22864 / 2 / 28.1
Q9FJR0 / Regulator of nonsense transcripts 1 homolog / Nuclear / 55 / 23471 / 3 / 15
P42066 / Phphoenolpyruvate carboxykinase [ATP] / Nuclear / 82 / 22976 / 3 / 15.9
Q94L32 / Putative glycylpeptide N-tetradecanoyltransferase 2 / Nuclear / 79 / 20823 / 2 / 11.5
Q96452 / 14-3-3-like protein C / Nuclear / 62 / 18486 / 3 / 13.4
Q01548 / Peroxidase 2 / Nuclear / 62 / 18620 / 5 / 14.1
A2WQG7 / Probable histone H2A.5 / Nuclear / 47 / 22461 / 3 / 17.2
P22277 / 40S ribomal protein S27a / Nuclear / 118 / 16490 / 6 / 26.9
Q8H0Y8 / Probable WRKY transcription factor 41 / Nuclear / 37 / 16288 / 2 / 11.5
O20265 / 30S ribomal protein S4, chloroplastic / Nuclear / 233 / 20596 / 8 / 53
Q67HC0 / Photystem II reaction center protein L / Nuclear / 43 / 110691 / 2 / 5.2
Q6L602 / Photystem I assembly protein ycf4 / Nuclear / 34 / 40078 / 2 / 7.2
Q9ZV65 / Homeobox-leucine zipper protein HDG3 / Nuclear / 85 / 16248 / 2 / 14.1
Q9SD34 / Zinc finger CCCH domain-containing protein 44 / Nuclear / 31 / 13744 / 3 / 20.8
O49498 / DEMETER-like protein 3 / Nuclear / 75 / 15273 / 3 / 32.8
A2XZN0 / Probable histone H2A.6 / Nuclear / 32 / 83529 / 4 / 6
Q1SWQ1 / Probable histone H2B.2 / Nuclear / 41 / 103331 / 7 / 9.2
Q9C895 / E3 ubiquitin-protein ligase BRE1-like 2 / Nuclear / 125 / 14532 / 6 / 22.1
P22798 / 50S ribomal protein L15, chloroplastic / Nuclear / 32 / 19890 / 2 / 15.2
A1E9M5 / Translation initiation factor IF-1, chloroplastic / Nuclear / 55 / 13192 / 2 / 19.5
Q41811 / Histone H4.3 / Nuclear / 30 / 38751 / 4 / 18.3
Q6YXY2 / Probable histone acetyltransferase HAC-like 1 / Nuclear / 97 / 14809 / 4 / 32.3
P47903 / 40S ribomal protein S27 / Nuclear / 62 / 14765 / 4 / 42.3
P49689 / 40S ribomal protein S30 / Nuclear / 55 / 9837 / 2 / 31.9
Q0INC5 / DEAD-box ATP-dependent RNA helicase 28 / Nuclear / 51 / 23467 / 5 / 26.5
A2XW69 / E3 ubiquitin-protein ligase BRE1-like 1 / Nuclear / 34 / 12243 / 2 / 10.4
P46607 / Homeobox-leucine zipper protein GLABRA 2 / Nuclear / 38 / 12728 / 2 / 17.7
Q6L3Z4 / Putative late blight resistance protein homolog R1B-12 / Nuclear / 63 / 10236 / 2 / 30.4
Q9FL07 / RING-H2 finger protein ATL5I / Nuclear / 32 / 57130 / 2 / 3.7
Q6K4V3 / Zinc finger CCCH domain-containing protein 15 / Nuclear / 49 / 13109 / 2 / 23
A2WNH1 / Calmodulin-3 / Nuclear / 575 / 11544 / 24 / 61.2
Q9XED8 / Auxin response factor 9 / Nuclear / 33 / 188318 / 7 / 6.7
Q6LAF3 / Histone H4 / Nuclear / 83 / 9664 / 2 / 55.8
P59272 / 40S ribosomal protein S27a / Nuclear / 58 / 6883 / 2 / 17.7
P59271 / 40S ribosomal protein S27a-1 / Nuclear / 62 / 21724 / 2 / 14.6
P59232 / 40S ribosomal protein S27a-2 / Nuclear / 34 / 89453 / 7 / 9.9
P45457 / Isocitrate lyase 2 / Peroxisome / 34 / 100336 / 7 / 4.5
P29756 / Catalase-1/2 / Peroxisome / 45 / 48096 / 2 / 6.4
O23880 / 13S globulin seed storage protein 2 / Vacuolar membrane / 404 / 59676 / 23 / 21.2
P0C520 / ATP synthase subunit alpha, mitochondrial / Vacuolar membrane / 109 / 16807 / 3 / 26.8
Q9ZNZ7 / Ferredoxin-dependent glutamate synthase 1, chloroplastic / Vacuolar membrane / 119 / 17872 / 3 / 22.3
Q9LMX4 / Probable inactive purple acid phosphatase 1 / Vacuolar membrane / 32 / 72232 / 6 / 13
P54773 / Photystem II 22 kDa protein, chloroplastic / Vacuolar membrane / 49 / 25757 / 4 / 21.9
Q0E0P0 / Beta-fructofuranidase, insoluble isoenzyme 1 / Vacuolar membrane / 122 / 12040 / 3 / 30.4
Q9M0H6 / Mannan endo-1,4-beta-mannidase 5 / Vacuolar membrane / 137 / 11402 / 5 / 50.5
O80977 / Vacuolar-sorting receptor 3 / Vacuolar membrane / 33 / 63639 / 2 / 4.3