Supplementary table 1. Compound microsatellites mined in fourteen Lactobacillus genomes. Serial S1, S2…is according to the serial numbers alloted in Table 1. Duplicated motifs are shown in green colour. Red letters indicate overlapping residue in cSSRs.
S1 / Compound SSR / Start / End / Coding Info1 / (AAGCGA)3-x0-(CAAA)3 / 59013 / 59041 / Non-coding
2 / (TTAA)3-x4-(AATA)3 / 74494 / 74523 / Coding
3 / (ATT)4-x0-(AATA)3 / 102989 / 103010 / Coding
4 / (AAAG)3-x9-(AGCA)3 / 106812 / 106844 / Coding
5 / (TGA)4-x5-(ATG)5 / 229243 / 229274 / Coding
6 / (AAGGT)3-x1-(CTGTT)3 / 296129 / 296157 / Coding
7 / (CTAA)3-x1-(AATT)3 / 395976 / 395999 / Coding
8 / (TTTA)3-x0-(ATGT)3 / 403004 / 403025 / Non-coding
9 / (AAGCGA)3-x0-(CAAA)3 / 413537 / 413565 / Non-coding
10 / (GAT)4-x6-(TTTA)3 / 423560 / 423589 / Coding
11 / (AAGCGA)3-x0-(CAAA)3 / 434005 / 434033 / Non-coding
12 / (GCAA)3-x0-(ATGC)3 / 448028 / 448050 / Coding
13 / (TAT)5-x7-(GTT)4 / 625827 / 625860 / Coding
14 / (AAAG)3-x2-(GAA)4 / 724803 / 724826 / Coding
15 / (TGA)4-x0-(AAAAGA)3 / 808240 / 808269 / Coding
16 / (TCTT)3-x5-(TTTG)3 / 828676 / 828702 / Non-coding
17 / (AGC)4-x0-(TTC)4 / 872387 / 872409 / Coding
18 / (AAT)4-x9-(GAAA)3 / 1156753 / 1156785 / Non-coding
19 / (ATC)4-x5-(TAA)4 / 1173051 / 1173079 / Coding
20 / (GAT)4-x9-(TGAT)3 / 1189732 / 1189763 / Coding
21 / (CTT)4-x6-(TTTC)3 / 1435226 / 1435253 / Coding
22 / (GTAA)3-x1-(TAT)4 / 1505236 / 1505259 / Coding
23 / (CTT)4-x6-(TAG)4 / 1530032 / 1530061 / Non-coding
24 / (TAGC)3-x3-(TCTT)3 / 1584346 / 1584370 / Coding
25 / (CTT)4-x6-(TCAT)3 / 1587857 / 1587885 / Coding
26 / (CCGAAG)3-x9-(GAGCCA)3 / 1678238 / 1678282 / Coding
27 / (CAAG)3-x4-(TAA)4 / 1686454 / 1686480 / Coding
28 / (TA)7-x3-(AATA)3 / 1689670 / 1689697 / Non-coding
29 / (AAAG)3-x0-(TAG)4 / 1873969 / 1873991 / Coding
S2 / Compound SSR / Start / End / Coding
1 / (AAT)4-x1-(TCAG)3 / 351364 / 351387 / Coding
2 / (CCA)4-x9-(AGCT)3 / 429762 / 429793 / Coding
3 / (GAC)4-x0-(GAT)4 / 515051 / 515074 / Coding
4 / (TAA)4-x9-(CAT)4 / 1492267 / 1492298 / Coding
5 / (GCA)4-x5-(AGC)4 / 1847374 / 1847402 / Coding
6 / (CAT)4-x6-(TCA)4 / 1955517 / 1955544 / Coding
7 / (CCGT)3-x1-(TCT)4 / 2024698 / 2024720 / Coding
8 / (GACT)3-x5-(ACC)4 / 2197618 / 2197646 / Coding
S3 / Compound SSR / Start / End / Coding
1 / (AT)6-x8-(TGC)4 / 373528 / 373558 / Coding
2 / (TTG)4-x8-(CAG)4 / 874935 / 874966 / Non-coding
3 / (TGC)4-x3-(AACC)3 / 1428025 / 1428050 / Coding
4 / (CAG)4-x6-(GCC)4 / 2062068 / 2062097 / Coding
5 / (CCA)4-x5-(CA)6 / 2123953 / 2123981 / Coding
6 / (CAA)4-x2-(CA)6 / 2369281 / 2369306 / Coding
7 / (TAA)4-x9-(TAT)4 / 2381186 / 2381220 / Non-coding
8 / (TA)7-x1-(CGAA)3 / 2515555 / 2515581 / Non-coding
9 / (CT)6-x6-(TGTT)3 / 2656593 / 2656622 / Non-coding
10 / (GAT)4-x9-(ATC)4 / 2774222 / 2774252 / Non-coding
S4 / Compound SSR / Start / End / Coding Info
1 / (TAAG)4-x9-(TAAA)3 / 35879 / 35914 / Non-coding
2 / (ATT)4-x0-(TTTA)3 / 66633 / 66656 / Non-coding
3 / (TCG)4-x7-(GAA)4 / 201388 / 201418 / Coding
4 / (AGA)4-x0-(TTAT)3 / 256660 / 256682 / Coding
5 / (AAG)4-x5-(GAA)4 / 271047 / 271076 / Coding
6 / (TAT)4-x1-(ATG)4 / 282530 / 282553 / Non-coding
7 / (GAC)4-x2-(TGA)4 / 301524 / 301549 / Coding
8 / (CAA)4-x1-(TAAA)3 / 328351 / 328375 / Non-coding
9 / (GGCC)3-x1-(AAAG)3 / 425012 / 425036 / Coding
10 / (GAA)5-x3-(GAA)4 / 441584 / 441612 / Coding
11 / (AAG)4-x4-(AGAA)3 / 454430 / 454457 / Coding
12 / (GGC)4-x4-(CAGC)3 / 569369 / 569397 / Coding
13 / (CCG)4-x1-(GCAGA)3 / 642092 / 642118 / Coding
14 / (GCT)4-x1-(CCGG)3 / 665344 / 665367 / Coding
15 / (ACC)4-x5-(CAC)4 / 773207 / 773235 / Coding
16 / (TAAAT)3-x4-(AAAG)3 / 814238 / 814269 / Non-coding
17 / (GGCC)3-x9-(CAGC)3 / 854299 / 854332 / Coding
18 / (CAT)4-x2-(TCTT)3 / 1035263 / 1035289 / Coding
19 / (CTT)4-x5-(ATTC)3 / 1160862 / 1160890 / Coding
20 / (TCTT)3-x7-(TAA)4 / 1246320 / 1246349 / Non-coding
21 / (TTGC)4-x8-(GGCCA)3 / 1249840 / 1249876 / Coding
22 / (GCT)4-x7-(TCC)4 / 1310993 / 1311023 / Coding
23 / (AGCA)3-x2-(CGG)4 / 1412930 / 1412955 / Coding
24 / (TC)6-x1-(TGCT)3 / 1457492 / 1457514 / Non-coding
25 / (ACT)4-x0-(TCA)4 / 1523024 / 1523047 / Coding
26 / (ACA)4-x8-(AAT)4 / 1660754 / 1660784 / Coding
27 / (CAT)4-x2-(TCTT)3 / 1661947 / 1661973 / Coding
28 / (TTGA)3-x1-(GCT)4 / 1680128 / 1680150 / Coding
29 / (GATT)3-x4-(TGCC)3 / 1729543 / 1729570 / Non-coding
30 / (CAT)4-x2-(TCTT)3 / 1823139 / 1823165 / Coding
S5 / Compound SSR / Start / End / Coding Info
1 / (AACC)3-x9-(AGGT)3 / 483119 / 483150 / Non-coding
2 / (TAAGT)3-x3-(ACC)4 / 647905 / 647933 / Coding
3 / (CAAC)3-x1-(AAG)5 / 680406 / 680433 / Coding
4 / (AGCT)3-x5-(AAGT)3 / 737105 / 737133 / Non-coding
5 / (GGC)4-x4-(CGGG)3 / 1016719 / 1016745 / Coding
6 / (CGT)4-x0-(AAC)4 / 1031351 / 1031373 / Coding
7 / (CTT)4-x0-(CCAT)3 / 1710029 / 1710052 / Coding
S6 / Compound SSR / Start / End / Coding Info
1 / (TGA)4-x4-(ACA)4 / 57329 / 57355 / Coding
2 / (AGA)4-x1-(TAA)4 / 57521 / 57544 / Coding
3 / (GTG)4-x8-(GCA)4 / 63939 / 63970 / Coding
4 / (TAA)4-x-3-(CAA)4 / 185435 / 185454 / Coding
5 / (TAGA)3-x8-(AAAT)3 / 435086 / 435116 / Non-coding
6 / (CAA)4-x2-(GAT)4 / 443352 / 443377 / Coding
7 / (TAG)4-x-1-(GAA)4 / 465651 / 465673 / Coding
8 / (TAA)4-x2-(ATGA)3 / 494395 / 494418 / Coding
9 / (TAAGT)5-x4-(ATA)4 / 607380 / 607421 / Coding
10 / (TAAGT)5-x4-(ATA)4 / 647466 / 647507 / Coding
11 / (TTA)4-x4-(TGG)4 / 716301 / 716329 / Coding
12 / (AGAA)3-x5-(AAATT)3 / 737124 / 737154 / Coding
13 / (AATC)3-x2-(GAAT)3 / 944500 / 944524 / Coding
14 / (AT)6-x8-(AT)6 / 1010886 / 1010915 / Non-coding
15 / (TTC)4-x1-(ATCT)3 / 1210973 / 1210995 / Coding
16 / (ATT)6-x6-(AGT)4 / 1264302 / 1264337 / Non-coding
17 / (TCA)4-x0-(GCA)4 / 1271097 / 1271120 / Coding
18 / (TCA)4-x1-(CAT)4 / 1327877 / 1327901 / Coding
19 / (AAGC)3-x2-(TGAA)3 / 1360260 / 1360283 / Coding
20 / (ATT)4-x8-(TCAA)3 / 1366411 / 1366443 / Coding
21 / (TTTA)3-x8-(TTTA)3 / 1377238 / 1377270 / Coding
22 / (TTTA)3-x2-(CTT)4 / 1677626 / 1677649 / Non-coding
23 / (TCA)4-x3-(TTAA)3 / 1715494 / 1715519 / Coding
24 / (CTTA)3-x3-(AATT)3 / 1767586 / 1767612 / Non-coding
25 / (AAT)5-x8-(CTTT)3 / 1780126 / 1780159 / Coding
26 / (GTT)4-x1-(ACTT)3 / 1856302 / 1856325 / Coding
S7 / Compound SSR / Start / End / Coding Info
1 / (GTT)4-x1-(GAT)4 / 4235 / 4258 / Coding
2 / (TGA)5-x2-(ATG)4 / 8853 / 8881 / Coding
3 / (TCTT)3-x5-(TGAT)3 / 60909 / 60940 / Non-coding
4 / (TAAA)3-x5-(ATT)4 / 168313 / 168340 / Non-coding
5 / (ATTT)3-x9-(AGT)4 / 448209 / 448239 / Coding
6 / (ATG)4-x5-(GAA)4 / 846107 / 846135 / Coding
7 / (GAT)4-x3-(GTA)4 / 857878 / 857904 / Coding
8 / (TCTT)3-x5-(TTTG)3 / 881342 / 881368 / Non-coding
9 / (AATG)3-x8-(TGAA)3 / 1008283 / 1008314 / Coding
10 / (CAAT)3-x9-(AAGAG)3 / 1168657 / 1168692 / Non-coding
11 / (GTA)4-x4-(CAT)4 / 1312822 / 1312849 / Coding
12 / (TCT)5-x5-(TTC)4 / 1364238 / 1364269 / Coding
13 / (ATT)4-x3-(TGCT)3 / 1449955 / 1449980 / Non-coding
14 / (TAA)4-x4-(CAA)4 / 1455917 / 1455942 / Coding
15 / (CTG)4-x3-(TTAA)3 / 1499489 / 1499516 / Coding
16 / (TGTAT)3-x9-(TAAA)3 / 1568253 / 1568288 / Coding
17 / (ACC)4-x1-(AACA)3 / 1701957 / 1701980 / Coding
18 / (AAAT)3-x5-(TTA)4 / 1768814 / 1768842 / Coding
19 / (CTTA)3-x9-(TCTT)3 / 1772398 / 1772431 / Coding
20 / (AAT)4-x0-(TA)6 / 2001321 / 2001343 / Non-coding
21 / (AGT)4-x7-(GTA)4 / 2024994 / 2025024 / Coding
S8 / Compound SSR / Start / End / Coding Info
1 / (CAT)4-x9-(CAT)5 / 95291 / 95326 / Non-coding
2 / (GATC)3-x8-(ATG)4 / 194533 / 194563 / Coding
3 / (CGGT)3-x7-(GAC)4 / 297234 / 297263 / Coding
4 / (ATTG)3-x9-(ACTA)3 / 379974 / 380005 / Coding
5 / (CGTATT)3-x4-(TTC)4 / 640995 / 641028 / Coding
6 / (CAA)4-x-3-(GAA)5 / 665037 / 665060 / Coding
7 / (AATTTT)3-x9-(TTTAG)3 / 703099 / 703139 / Coding
8 / (AAT)5-x6-(AAT)5-x6-(AAT)4 / 735591 / 735644 / Coding
9 / (AAT)4-x0-(TGAT)3 / 767432 / 767454 / Non-coding
10 / (ACG)4-x0-(GCT)4 / 856323 / 856346 / Coding
11 / (GTC)4-x2-(GAT)7 / 1203237 / 1203271 / Coding
12 / (TTAT)3-x3-(GTT)4 / 1419620 / 1419645 / Coding
13 / (ATG)4-x8-(CAA)4 / 1487228 / 1487259 / Coding
14 / (ACT)5-x6-(ACT)4 / 1589568 / 1589600 / Coding
15 / (TTA)4-x6-(TTA)5 / 1842877 / 1842909 / Coding
16 / (AAT)4-x3-(CAA)4 / 1876850 / 1876876 / Non-coding
17 / (TCA)4-x9-(TCAG)3 / 2191851 / 2191884 / Coding
18 / (GAT)4-x9-(TTGA)3 / 2317737 / 2317768 / Coding
19 / (TTC)4-x8-(CTT)4 / 2604890 / 2604921 / Coding
20 / (TGG)4-x7-(CTGT)3 / 3121823 / 3121853 / Coding
S9 / Compound SSR / Start / End / Coding Info
1 / (TATT)3-x8-(CAAA)3 / 177234 / 177263 / Non-coding
2 / (AATT)3-x0-(TTAA)3 / 202078 / 202100 / Non-coding
3 / (AAG)4-x1-(AAAG)3 / 208796 / 208820 / Coding
4 / (GTTT)3-x0-(TAGA)3 / 311046 / 311070 / Non-coding
5 / (CTG)4-x0-(CAGTTG)3 / 361799 / 361828 / Coding
6 / (TAT)4-x9-(ATA)4 / 417200 / 417233 / Coding
7 / (CTGG)3-x5-(TCT)4 / 443941 / 443967 / Coding
8 / (TTA)4-x1-(CAA)5 / 507172 / 507199 / Coding
9 / (AATT)3-x4-(TA)7 / 633344 / 633373 / Non-coding
10 / (AAG)6-x6-(TGAA)3 / 774171 / 774206 / Coding
11 / (GTC)4-x8-(AAC)4 / 836362 / 836393 / Coding
12 / (ATT)4-x9-(GAT)4 / 856395 / 856427 / Coding
13 / (AAT)4-x1-(TTAA)3 / 944326 / 944349 / Coding
14 / (TTA)4-x5-(ATT)4 / 960903 / 960930 / Coding
15 / (ATT)4-x9-(ATT)4 / 1035528 / 1035559 / Coding
16 / (TCT)4-x6-(GGTTC)3 / 1208368 / 1208398 / Coding
17 / (TCA)4-x9-(CGA)4 / 1845384 / 1845415 / Coding
18 / (GTTT)3-x4-(TTA)4 / 1866933 / 1866960 / Non-coding
19 / (CTAA)3-x6-(AT)6 / 1954178 / 1954205 / Non-coding
S10 / Compound SSR / Start / End / Coding Info
1 / (TATT)3-x8-(CAAA)3 / 176853 / 176882 / Non-coding
2 / (AATT)3-x0-(TTAA)3 / 201897 / 201919 / Non-coding
3 / (AAG)4-x1-(AAAG)3 / 208615 / 208639 / Coding
4 / (GTTT)3-x0-(TAGA)3 / 310865 / 310889 / Non-coding
5 / (CTG)4-x0-(CAGTTG)3 / 361622 / 361651 / Coding
6 / (TAT)4-x9-(ATA)4 / 417023 / 417056 / Coding
7 / (CTGG)3-x5-(TCT)4 / 452252 / 452278 / Coding
8 / (TTA)4-x1-(CAA)5 / 515483 / 515510 / Coding
9 / (AATT)3-x4-(TA)7 / 642898 / 642927 / Non-coding
10 / (AAG)6-x6-(TGAA)3 / 783530 / 783565 / Coding
11 / (GTC)4-x8-(AAC)4 / 845721 / 845752 / Coding
12 / (ATT)4-x9-(GAT)4 / 865754 / 865786 / Coding
13 / (AAT)4-x1-(TTAA)3 / 953685 / 953708 / Coding
14 / (TTA)4-x5-(ATT)4 / 970264 / 970291 / Coding
15 / (ATT)4-x9-(ATT)4 / 1044900 / 1044931 / Coding
16 / (TCT)4-x6-(GGTTC)3 / 1247984 / 1248014 / Coding
17 / (TCA)4-x9-(CGA)4 / 1884800 / 1884831 / Coding
18 / (GTTT)3-x4-(TTA)4 / 1906349 / 1906376 / Non-coding
19 / (CTAA)3-x6-(AT)6 / 1993594 / 1993621 / Non-coding
S11 / Compound SSR / Start / End / Coding Info
1 / (TAGC)3-x7-(ACT)4 / 67141 / 67169 / Coding
2 / (TAA)4-x4-(AAT)5 / 393557 / 393588 / Coding
3 / (AGC)4-x4-(TAAG)3 / 426702 / 426730 / Coding
4 / (CGGA)3-x3-(TTCA)3 / 473653 / 473677 / Coding
5 / (ATC)4-x2-(GAT)4 / 508352 / 508378 / Coding
6 / (TGTA)3-x8-(TTA)4 / 552999 / 553030 / Coding
7 / (TTC)4-x5-(AAG)4 / 623584 / 623610 / Coding
8 / (CAAA)3-x7-(ACA)4 / 624604 / 624635 / Coding
9 / (TAAA)3-x3-(AAAG)3 / 722601 / 722626 / Coding
10 / (AATG)3-x2-(AAC)4 / 852566 / 852590 / Coding
11 / (GAT)4-x6-(TGAA)3 / 1083002 / 1083029 / Coding
12 / (ATG)4-x0-(CCAA)3 / 1194417 / 1194439 / Coding
13 / (GTT)4-x9-(TTA)4-x6-(TTG)6 / 1411493 / 1411550 / Coding
14 / (ATA)4-x6-(ATT)4 / 1479414 / 1479443 / Coding
15 / (TCA)4-x0-(TCG)4 / 1616836 / 1616859 / Coding
16 / (ATCA)3-x4-(AGC)4 / 1789267 / 1789293 / Coding
17 / (ATCA)3-x5-(TATT)3 / 1838186 / 1838214 / Coding
S12 / Compound SSR / Start / End / Coding
1 / (ATA)4-x1-(TTC)4 / 314 / 337 / Coding
2 / (AAC)5-x0-(AAT)4 / 49332 / 49357 / Coding
3 / (TAAA)3-x4-(AAT)4 / 112164 / 112189 / Coding
4 / (CCAA)3-x8-(ATT)4 / 139696 / 139727 / Coding
5 / (GAT)4-x6-(AATGG)3 / 248841 / 248871 / Coding
6 / (AAAG)3-x9-(AATT)3 / 270587 / 270619 / Non-coding
7 / (CTTT)3-x6-(GTT)4 / 291993 / 292022 / Coding
8 / (TAGATA)4-x9-(ATA)4 / 300015 / 300058 / Coding
9 / (GTGA)3-x7-(AAC)4 / 301086 / 301117 / Coding
10 / (TGA)5-x8-(ATG)4-x4-(AGA)4-x8-(ATG)8 / 372374 / 372456 / Coding
11 / (TAT)4-x5-(ATA)4 / 513697 / 513724 / Coding
12 / (AAG)4-x2-(AGAAAA)3 / 589479 / 589510 / Coding
13 / (AGA)4-x8-(TAA)4 / 594322 / 594353 / Coding
14 / (ATA)4-x1-(TGA)4 / 612490 / 612514 / Coding
15 / (TAC)4-x3-(CAA)4 / 634509 / 634535 / Coding
16 / (ATCA)3-x4-(ACA)4 / 698512 / 698539 / Coding
17 / (TTC)4-x2-(TGC)4 / 767601 / 767626 / Coding
18 / (TTA)4-x6-(TA)8-x2-(ATTTT)3 / 943068 / 943117 / Non-coding
19 / (TCA)4-x9-(TCA)7 / 971111 / 971152 / Coding
20 / (ATTC)3-x7-(CTAA)3 / 983063 / 983092 / Coding
21 / (TTC)4-x9-(TTCA)3 / 986137 / 986169 / Coding
22 / (GAA)5-x0-(AATT)3 / 1203817 / 1203843 / Coding
23 / (TTAA)3-x0-(ATT)4 / 1219091 / 1219115 / Coding
24 / (CAT)4-x3-(ATA)4 / 1426794 / 1426818 / Coding
25 / (TA)6-x1-(ATA)4 / 1482174 / 1482197 / Non-coding
26 / (TCA)4-x4-(TTAA)3 / 1486095 / 1486121 / Coding
27 / (CTT)4-x0-(CATT)3 / 1631719 / 1631740 / Coding
28 / (ATT)5-x1-(TC)6 / 1648326 / 1648352 / Coding
29 / (TAAA)3-x4-(CCAA)3 / 1782795 / 1782822 / Non-coding
30 / (CCAT)3-x3-(GTAT)3 / 1798032 / 1798057 / Non-coding
S13 / Compound SSR / Start / End / Coding Info
1 / (AAAT)3-x6-(TTAA)4 / 21216 / 21248 / Non-coding
2 / (AATT)3-x0-(GAAA)3 / 92807 / 92830 / Coding
3 / (GA)6-x3-(GTTA)3 / 145548 / 145573 / Coding
4 / (AGA)4-x4-(TAGT)3 / 270648 / 270675 / Coding
5 / (ATTG)3-x3-(TTAA)3 / 274121 / 274146 / Coding
6 / (TAT)4-x7-(ATT)4 / 322377 / 322406 / Coding
7 / (AATA)3-x4-(AAAT)3 / 489614 / 489639 / Coding
8 / (CAA)4-x3-(ATG)4 / 513906 / 513932 / Coding
9 / (AATT)3-x1-(TGA)4 / 540160 / 540184 / Coding
10 / (AT)6-x3-(TAA)4 / 625162 / 625187 / Non-coding
11 / (TTTA)4-x0-(AAATA)3 / 699747 / 699778 / Non-coding
12 / (TGG)4-x5-(CTG)4 / 779406 / 779434 / Coding
13 / (TGA)4-x-6-(TAA)4 / 860628 / 860645 / Coding
14 / (GAT)4-x9-(TGA)4 / 923472 / 923503 / Coding
15 / (AAGA)3-x0-(TAT)4 / 987991 / 988015 / Coding
16 / (TAT)4-x5-(TAAA)3 / 991073 / 991099 / Non-coding
17 / (TAAA)3-x7-(AATA)3 / 1053128 / 1053157 / Non-coding
18 / (TTTC)3-x9-(AGAA)3 / 1122465 / 1122495 / Coding
19 / (AAT)4-x5-(ATAA)3 / 1158528 / 1158555 / Non-coding
20 / (ACTAA)4-x0-(TTAA)3 / 1192772 / 1192803 / Non-coding
21 / (TCAA)3-x7-(ATT)4 / 1213429 / 1213459 / Coding
22 / (TCTT)3-x4-(TTGC)3 / 1282907 / 1282932 / Coding
23 / (AAATA)3-x0-(ATAACA)3 / 1338820 / 1338851 / Coding
24 / (ATAA)3-x2-(ACA)4 / 1407538 / 1407564 / Non-coding
25 / (AAGTA)3-x6-(ATGT)3 / 1511933 / 1511964 / Coding
26 / (TAGA)3-x4-(ATCT)3 / 1596362 / 1596388 / Coding
27 / (GTT)4-x1-(ACTT)3 / 1946207 / 1946230 / Coding
28 / (CTT)4-x3-(TCT)4 / 1962685 / 1962711 / Coding
29 / (TA)6-x0-(AAT)5 / 1979375 / 1979400 / Coding
S14 / Compound SSR / Start / End / Coding Info
1 / (TAAG)4-x9-(TAAA)3 / 34406 / 34441 / Non-coding
2 / (TCG)4-x7-(GAA)4 / 196287 / 196317 / Coding
3 / (AGA)4-x0-(TTAT)3 / 248779 / 248801 / Coding
4 / (AAG)4-x5-(GAA)4 / 267043 / 267072 / Coding
5 / (TAT)4-x1-(ATG)4 / 276997 / 277020 / Coding
6 / (CAA)4-x1-(TAAA)3 / 322910 / 322934 / Non-coding
7 / (GGCC)3-x1-(AAAG)3 / 420642 / 420666 / Coding
8 / (GAA)5-x3-(GAA)4 / 437214 / 437242 / Coding
9 / (AAG)4-x4-(AGAA)3 / 450253 / 450279 / Coding
10 / (GGC)4-x4-(CAGC)3 / 563511 / 563539 / Coding
11 / (CCG)4-x1-(GCAGA)3 / 636217 / 636243 / Coding
12 / (GCT)4-x1-(CCGG)3 / 659470 / 659493 / Coding
13 / (ACC)4-x5-(CAC)4 / 764107 / 764135 / Coding
14 / (GGCC)3-x9-(CAGC)3 / 840699 / 840732 / Coding
15 / (CTT)4-x5-(ATTC)3 / 1180187 / 1180215 / Coding
16 / (TTGC)4-x8-(GGCCA)3 / 1263367 / 1263403 / Coding
17 / (GCT)4-x7-(TCC)4 / 1324605 / 1324635 / Non-coding
18 / (AGCA)3-x2-(CGG)4 / 1425695 / 1425720 / Coding
19 / (TC)6-x1-(TGCT)3 / 1470693 / 1470715 / Non-coding
20 / (ACT)4-x0-(TCA)4 / 1541498 / 1541521 / Coding
Supplementary table 2. Increased number of microsatellite complexity with increased dMAX in studied genomes.
Genome Serial number / dMAX10 / dMAX50No. of ‘2-microsatellite’ cSSR / No. of ‘3-microsatellite’ cSSR / No. of ‘4-microsatellite’ cSSR / No. of ‘5-microsatellite’ cSSR / No. of ‘2-microsatellite’ cSSR / No. of ‘3-microsatellite’ cSSR / No. of ‘4-microsatellite’ cSSR / No. of ‘5-microsatellite’ cSSR
S1 / 29 / 0 / 0 / 0 / 83 / 7 / 0 / 0
S2 / 8 / 0 / 0 / 0 / 31 / 1 / 0 / 0
S3 / 10 / 0 / 0 / 0 / 51 / 5 / 0 / 0
S4 / 30 / 0 / 0 / 0 / 79 / 4 / 0 / 0
S5 / 7 / 0 / 0 / 0 / 38 / 3 / 1 / 0
S6 / 26 / 0 / 0 / 0 / 99 / 3 / 0 / 0
S7 / 21 / 0 / 0 / 0 / 73 / 4 / 0 / 0
S8 / 19 / 0 / 0 / 0 / 73 / 0 / 1 / 1
S9 / 19 / 0 / 0 / 0 / 54 / 1 / 3 / 0
S10 / 19 / 0 / 0 / 0 / 54 / 1 / 3 / 0
S11 / 16 / 1 / 0 / 0 / 58 / 2 / 2 / 0
S12 / 28 / 1 / 1 / 0 / 116 / 9 / 1 / 0
S13 / 29 / 0 / 0 / 0 / 82 / 10 / 1 / 0
S14 / 20 / 0 / 0 / 0 / 72 / 3 / 1 / 0