Supplementary Table 1. QTL Cartographer Results for Yield, Anthesis and Height from CIM
Supplementary Table 1. QTL Cartographer results for yield, anthesis and height from CIM analysis. Positive effects are in favour of Babax allele; negative (shaded) favour Seri.
Yield (g m-2) / Anthesis (days) / Height (cm)BILO05 / LUND05 / GATD02 / GATD04 / GATD05 / GATI06 / BILO05 / GATD02 / GATD03 / GATD04 / GATD05 / GATI05 / GATI06 / BILO05 / LUND05 / GATD02 / GATD03 / GATD04 / GATD05 / GATI06
Chr / Position / Marker / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive
1A-a / 1.9 / aac/caa-5 / 1.1 / -4.54
31.7 / wPt-9592 / 1.0 / -9.12
32.1 / gwm135 / 1.2 / 0.65
42.4 / aag/cta-8 / 1.6 / 0.76
47.1 / agg/cac-6 / 1.4 / 0.52 / 1.0 / 0.52 / 1.2 / -1.19
1A-b / 0.0 / wPt-0432 / 1.2 / -0.43
3.9 / wPt-8644 / 1.2 / -0.45
1B-a / 22.8 / wPt-5281 / 1.2 / -0.52 / 1.1 / -1.60 / 1.2 / 0.79 / 1.3 / 0.86
45.8 / aca/cac-5 / 1.3 / 8.82 / 1.6 / -0.52 / 1.4 / -2.28 / 2.0 / 1.31
57.5 / gwm273 / 1.1 / 11.20
58.1 / wPt-0170 / 1.7 / 1.17
59.2 / aac/ctg-4 / 3.4 / 10.03 / 1.3 / -0.57 / 2.4 / -0.68 / 1.2 / -0.73 / 1.0 / -0.59 / 1.1 / -2.05
60.4 / wPt-7529 / 1.6 / 1.12
61.0 / agg/cat-4 / 2.3 / -0.64 / 1.4 / -0.68
61.8 / acc/cat-4 / 2.3 / 1.30
62.4 / act/ctc-7 / 1.7 / -0.84 / 1.4 / -0.65
63.5 / agg/cat-11 / 2.1 / -0.58
64.4 / barc065 / 4.4 / 11.97 / 1.2 / -0.56 / 1.9 / 1.24
66.7 / gwm413 / 3.3 / 10.16 / 1.8 / -0.59 / 2.6 / -1.00
70.1 / agg/ctg-5 / 1.0 / 11.21
70.9 / aac/cta-5 / 5.4 / 13.06 / 2.1 / -0.62 / 1.1 / -0.73 / 2.6 / -1.04 / 2.1 / 1.23
72.7 / agg/cat-18 / 1.1 / 1.19
74.3 / gwm131 / 5.7 / 13.58 / 1.1 / -0.51 / 1.8 / -0.58 / 1.2 / -0.67 / 1.2 / -0.57
76.1 / agg/cac-3 / 2.5 / -0.62 / 3.5 / -1.12 / 1.3 / 1.38
78.6 / agc/cta-9 / 1.1 / -0.45 / 2.2 / -0.64
82.6 / agc/cta-6 / 5.1 / 13.18 / 1.4 / -0.54 / 2.7 / -0.67 / 2.7 / -1.03
85.2 / agc/cag-5 / 1.0 / 11.60 / 1.1 / -0.64 / 2.7 / -0.77
87.4 / aag/ctg-14 / 1.9 / -0.62
87.6 / wPt-8930 / 2.4 / -1.07
88.2 / aca/cta-9 / 1.9 / -0.59 / 1.1 / -0.57
89.0 / gwm582 / 1.2 / -0.42
90.2 / wPt-2052 / 2.0 / -0.59 / 1.7 / -0.53 / 1.3 / -0.63 / 3.1 / -0.76
91.5 / acc/ctc-4 / 1.2 / 12.53
92.4 / acg/cta-2 / 2.3 / -0.61 / 1.2 / -0.47 / 2.7 / -0.69
99.2 / aca/caa-3 / 1.8 / -0.61
116.3 / agg/ctg-3 / 1.8 / 10.09 / 2.7 / 13.85 / 1.1 / 13.73 / 1.7 / -0.62 / 1.7 / 1.89
1D-a / 23.1 / acc/ctc-1 / 1.4 / 0.61
37.5 / gwm337 / 1.6 / 0.76 / 2.3 / 1.20
38.6 / aca/caa-2 / 3.8 / 1.36 / 1.4 / 0.79 / 1.4 / 0.70 / 1.9 / 1.46
46.8 / wPt-7038 / 1.3 / 8.12 / 1.0 / -0.46 / 3.4 / 1.42 / 1.5 / 0.81 / 1.9 / 1.21 / 1.5 / 0.72
53.9 / wPt-5503 / 3.8 / 1.41 / 1.6 / 0.84
58.3 / wPt-9380 / 1.1 / -0.45
63.8 / barc169 / 5.0 / 1.65
67.0 / wPt-8854 / 1.3 / -5.45 / 1.7 / 0.81
1D-b / 0.0 / gwm301d / 2.0 / -10.38 / 3.4 / 0.83 / 4.1 / 0.74 / 3.5 / 0.95 / 3.6 / 1.22
1.2 / wPt-1263 / 4.0 / 0.75 / 1.1 / 0.61
2.2 / wPt-4687 / 1.6 / 12.00
2.5 / agc/cag-3 / 1.2 / -4.88 / 3.5 / 0.71
2.8 / wPt-7697 / 2.5 / 0.83 / 2.4 / 1.04 / 5.6 / 0.89
3.6 / act/ctc-4 / 2.1 / -10.77 / 1.6 / 0.55 / 4.4 / 0.79 / 2.2 / 0.53 / 2.5 / 0.80 / 2.4 / 0.99 / 5.4 / 0.86 / 1.1 / 0.59
4.5 / act/cag-8 / 1.3 / -4.97
6.0 / aag/ctg-2 / 1.2 / -5.37 / 1.6 / 0.55 / 3.3 / 0.67 / 1.8 / 0.49 / 2.1 / 0.78 / 2.2 / 1.03 / 5.2 / 0.82 / 1.1 / 0.65
16.0 / wPt-5888 / 1.1 / -0.78
2B-a / 0.0 / wPt-9668 / 1.1 / 0.50
8.1 / wPt-7320 / 2.9 / 1.24 / 1.1 / 0.64 / 1.1 / 1.16
21.6 / wPt-0615 / 1.1 / -0.53
24.1 / wPt-6477 / 1.4 / 8.14
26.9 / acc/ctg-4 / 1.1 / -0.50 / 1.1 / -0.73 / 1.8 / 1.38
31.2 / acc/ctc-10 / 1.3 / 12.71 / 2.9 / 1.22 / 5.7 / 1.48 / 2.3 / 0.92 / 3.8 / 1.53
33.9 / wPt-7750 / 4.4 / 1.62
34.3 / aag/ctg-5 / 1.9 / 8.96 / 5.6 / 1.45 / 1.7 / 1.25
35.2 / agg/cat-7 / 2.8 / 1.03
36.1 / agg/cac-10 / 1.6 / 7.91
36.9 / agc/cag-4 / 6.0 / 1.92 / 2.9 / 1.06 / 4.1 / 1.65
37.4 / aag/ctg-15 / 5.8 / 1.55 / 1.6 / 1.30
38.2 / agg/cac-5 / 1.6 / 8.69 / 4.3 / 1.53 / 6.5 / 2.01 / 6.0 / 1.64 / 1.6 / 1.36 / 4.5 / 1.71
43.6 / gwm388 / 1.1 / -0.50 / 1.3 / -0.61 / 1.1 / 0.97 / 2.5 / 1.30
46.6 / acg/cta-1 / 3.4 / 1.26 / 5.7 / 1.93 / 1.2 / 0.72 / 1.4 / 1.16 / 2.5 / 1.32
49.2 / gwm191a / 1.2 / 7.02 / 1.1 / 0.88
51.7 / aca/ctg-1 / 1.1 / -0.79
53.1 / aag/ctg-12 / 1.1 / 9.21 / 3.2 / 1.16 / 5.0 / 1.74 / 1.1 / 0.64 / 1.9 / 1.34
59.7 / wPt-5680 / 1.3 / 0.90 / 1.1 / 0.98
65.2 / aca/caa-4 / 1.0 / 10.15 / 2.0 / -0.66 / 1.8 / 1.00 / 3.0 / 1.51 / 5.4 / 1.39 / 1.5 / 1.19
71.8 / agg/cta-3 / 1.9 / 1.03 / 3.3 / 1.56 / 5.5 / 1.42
79.5 / agg/ctg-2 / 3.0 / -0.82 / 1.3 / -0.77 / 1.1 / 1.02 / 1.5 / 0.93 / 2.9 / 1.60 / 5.4 / 1.54 / 1.2 / 1.17
2B-b / 0.0 / acc/ctg-3 / 1.1 / 0.52
9.9 / agg/cac-7 / 1.2 / 1.10
12.2 / gwm301c / 1.2 / 0.60
12.8 / gwm301a / 1.2 / 1.13
13.4 / wPt-3378 / 1.1 / 0.38
20.7 / agc/cta-8 / 1.4 / 0.64
2D-a / 0.0 / gwm102 / 2.1 / 6.39 / 1.1 / -0.76 / 1.0 / 0.61
10.8 / wPt-0298 / 1.0 / 5.75
3A-a / 3.4 / wPt-7341 / 1.1 / 0.53
17.9 / wPt-2866 / 1.5 / 7.95
22.4 / wPt-2478 / 1.8 / 8.09
25.0 / gwm369 / 1.2 / 7.30
36.7 / wPt-4407 / 1.5 / -5.41
44.5 / agc/cag-13 / 1.1 / 7.06 / 1.4 / -0.81
3A-b / 0.0 / act/cag-6 / 1.8 / -0.83
3.4 / acc/ctg-12 / 3.0 / -1.25
8.9 / acg/cta-8 / 5.2 / -1.67 / 1.5 / -0.76
13.2 / wPt-6408 / 1.7 / -0.73
13.5 / aac/cta-4 / 5.0 / -1.60 / 1.1 / -0.65
15.3 / wPt-6234 / 1.0 / -0.37
3B-a / 12.0 / wPt-2757 / 1.5 / 1.20
13.3 / barc147 / 1.1 / 1.18
17.3 / agg/cat-3 / 1.2 / 0.74 / 1.2 / 0.61 / 1.0 / 1.17 / 1.7 / 1.20
Yield (g m-2) / Anthesis (days) / Height (cm)
BILO05 / LUND05 / GATD02 / GATD04 / GATD05 / GATI06 / BILO05 / GATD02 / GATD03 / GATD04 / GATD05 / GATI05 / GATI06 / BILO05 / LUND05 / GATD02 / GATD03 / GATD04 / GATD05 / GATI06
Chr / Position / Marker / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive
3B-b / 3.6 / aag/ctc-9 / 1.1 / -1.08
22.2 / aca/ctg-5 / 1.3 / 0.40 / 1.1 / 0.38 / 1.4 / 0.79 / 1.2 / 0.40
27.9 / wPt-6047 / 1.4 / 0.41
29.0 / aac/cac-5 / 1.6 / 0.47
34.9 / wPt-1940 / 1.5 / 0.39 / 2.0 / 0.48
40.3 / aag/ctc-1 / 1.0 / 9.52 / 2.7 / 1.13
100.1 / wPt-1804 / 1.5 / -6.49 / 1.2 / -13.47 / 1.8 / 1.03
134.5 / acc/ctg-11 / 2.0 / 0.92
134.8 / wPt-8021 / 1.1 / -5.02
135.4 / acc/ctc-8 / 1.0 / 0.59
171.8 / wPt-4412 / 1.6 / 0.63
4A-a / 0.0 / wmc048c / 1.0 / -0.46 / 1.3 / -0.41 / 1.2 / -0.81 / 1.4 / 1.25
12.7 / aac/ctg-3 / 1.2 / -4.80 / 2.1 / -0.98 / 3.3 / -1.09 / 4.2 / -1.14 / 4.7 / -1.72
13.3 / agg/cta-12 / 3.1 / -1.31
14.4 / wmc048d / 1.0 / 7.67 / 1.0 / -0.36 / 1.5 / -0.80 / 4.6 / -1.17
15.2 / act/cag-3 / 1.1 / -0.68 / 2.4 / -1.07 / 3.5 / -1.38 / 2.6 / -1.00 / 4.9 / -1.80
17.9 / act/cag-5 / 1.4 / -5.64 / 1.1 / -0.77 / 2.7 / -0.98
4A-b / 2.5 / acg/cta-3 / 2.3 / -0.59 / 1.9 / -1.01 / 1.0 / -0.55 / 1.3 / -0.70 / 1.5 / -0.97
21.0 / agg/cta-9 / 1.1 / -0.80
24.5 / agg/cat-9 / 3.4 / -0.69
26.8 / aac/ctc-11 / 1.1 / -0.66
30.0 / aac/ctg-5 / 1.1 / -0.41 / 1.5 / -0.42
31.9 / wPt-7939 / 5.5 / -0.82
36.6 / aac/caa-6 / 4.1 / -0.76 / 1.7 / -0.48 / 2.5 / -0.79 / 5.6 / -0.87
45.6 / aac/caa-3 / 3.4 / -0.68 / 1.4 / -0.44 / 1.4 / -0.78 / 5.7 / -0.89 / 1.0 / 0.81
52.1 / act/cag-1 / 1.4 / -0.56 / 1.4 / -0.47 / 3.3 / -0.94 / 1.4 / -0.86 / 1.1 / -0.61
64.9 / wPt-2345 / 1.1 / 8.51
69.6 / wPt-5749 / 1.0 / 11.33
78.3 / barc070 / 1.4 / 8.23
86.0 / aca/cac-6 / 1.2 / -0.45
88.4 / aac/ctc-8 / 2.1 / -0.60
95.1 / wPt-1961 / 2.5 / -0.59
96.7 / aca/ctg-7 / 2.8 / -0.57 / 1.1 / -0.53
114.8 / act/cag-4 / 1.2 / -0.64
125.6 / aca/ctg-3 / 1.6 / 11.45 / 1.2 / -0.74 / 1.0 / -0.60
4B-b / 0.0 / act/ctc-6 / 1.3 / -6.05
4.6 / wPt-0391 / 1.6 / -1.08
18.8 / aac/ctg-7 / 1.2 / -5.87 / 2.0 / -7.16
24.4 / gwm006a / 2.4 / 9.62 / 1.8 / -6.83 / 6.0 / -2.03 / 1.6 / -0.96 / 4.2 / -1.34 / 2.3 / -1.29
33.2 / gwm375 / 2.6 / 10.54 / 2.0 / 6.47 / 1.1 / 8.30 / 1.0 / -0.49 / 1.3 / -0.72
35.3 / aac/ctc-9 / 1.1 / -5.10
37.0 / agc/cag-2 / 1.8 / 6.76 / 1.3 / 10.70 / 5.5 / -1.70 / 1.5 / -0.96 / 1.9 / -1.18
38.2 / aag/cta-5 / 1.4 / -0.77 / 3.2 / -1.00
40.3 / aac/caa-1 / 1.9 / 6.68 / 6.7 / -1.77 / 2.2 / -1.18
42.0 / wmc048a / 1.3 / -0.71 / 3.5 / -1.02
43.8 / barc020 / 1.7 / 8.04 / 1.6 / 5.70 / 1.3 / -0.76
44.4 / wPt-1708 / 1.9 / 9.68 / 2.5 / 7.95 / 1.4 / 9.88 / 1.1 / -0.41 / 1.0 / -0.57 / 1.2 / -0.80 / 3.0 / -1.04 / 2.5 / -1.31
4D-a / 0.0 / wmc048b / 3.0 / -0.80 / 1.4 / 1.31
2.1 / cfd023 / 3.8 / 13.43 / 3.6 / -1.02 / 1.3 / -0.61 / 1.1 / -0.67
5A-a / 0.0 / wPt-1165 / 1.7 / 0.49 / 1.3 / 0.43
8.2 / acc/ctc-12 / 2.0 / -7.45 / 1.1 / -4.42
9.5 / aag/ctg-10 / 1.7 / 0.58 / 1.8 / 1.01 / 1.5 / 1.22
36.9 / agc/cag-11 / 1.6 / 0.69
37.8 / agg/ctg-10 / 1.0 / -0.60
38.5 / acc/ctg-7 / 1.2 / 0.44 / 2.0 / 1.11 / 1.9 / 0.82 / 1.0 / -0.61
53.0 / agg/ctg-12 / 1.3 / 0.42 / 1.6 / 0.47
55.3 / barc186 / 1.2 / 0.61
57.5 / wPt-3620 / 1.5 / 0.44
60.0 / gwm304 / 2.2 / -7.32 / 1.5 / 0.43 / 1.1 / 0.55
64.4 / aac/ctc-12 / 1.5 / 0.40 / 1.5 / 0.40 / 1.7 / 0.46
69.7 / barc040 / 3.8 / -9.84
71.7 / barc100 / 1.3 / 0.84 / 1.3 / 0.47 / 1.5 / 0.88
91.8 / aac/caa-8 / 1.3 / -9.51
99.8 / aca/ctg-2 / 2.7 / 1.07 / 3.6 / 1.45 / 1.8 / 1.12 / 1.3 / 0.90
103.4 / wPt-3563 / 1.6 / -8.51 / 1.4 / 0.76 / 1.3 / 0.38 / 2.9 / 1.12 / 4.1 / 1.59 / 2.0 / 1.16 / 4.5 / 1.14 / 1.6 / 1.02
5B-a / 0.0 / wPt-5737 / 1.1 / -5.29
0.3 / wPt-9814 / 1.3 / -6.02 / 1.5 / -5.75 / 2.0 / 1.72
11.2 / aag/ctg-6 / 1.1 / 0.64 / 1.6 / 0.75 / 2.8 / 1.85
17.5 / gwm274 / 2.0 / -5.96 / 1.0 / -4.68 / 1.1 / -4.38 / 1.1 / -0.41
20.2 / gwm191b / 2.1 / -6.27
20.5 / acc/ctc-3 / 3.0 / 1.70
21.2 / aag/ctg-11 / 2.4 / -6.76 / 1.1 / -4.99
22.0 / gwm133 / 1.0 / -0.53 / 1.1 / 0.69 / 1.4 / 0.69 / 2.7 / 0.89 / 2.8 / 1.68
23.2 / aac/caa-7 / 1.7 / -5.57 / 2.8 / 1.67
26.3 / gwm213 / 1.6 / -0.47 / 1.1 / -0.49
30.7 / wPt-0103 / 1.9 / -6.30 / 1.3 / 0.57
31.4 / aag/ctc-11 / 1.4 / -5.14 / 1.3 / -0.45 / 1.6 / 0.66
6A-a / 0.0 / wPt-7938 / 2.7 / 11.49
6.5 / wPt-4016 / 2.6 / 11.71
17.0 / aca/cac-4 / 1.9 / 9.36
18.6 / wPt-6904 / 1.4 / -0.88 / 1.1 / -0.89
35.0 / aca/caa-5 / 2.1 / -1.14
55.2 / wPt-7599 / 1.3 / 5.44
64.7 / gwm518b / 1.2 / -8.96
90.4 / aag/ctg-8 / 1.2 / 4.79
6A-b / 10.5 / aca/ctg-8 / 1.4 / -0.63
14.9 / wPt-5696 / 2.6 / -0.96
Yield (g m-2) / Anthesis (days) / Height (cm)
BILO05 / LUND05 / GATD02 / GATD04 / GATD05 / GATI06 / BILO05 / GATD02 / GATD03 / GATD04 / GATD05 / GATI05 / GATI06 / BILO05 / LUND05 / GATD02 / GATD03 / GATD04 / GATD05 / GATI06
Chr / Position / Marker / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive / LOD / Additive
6B-a / 0.0 / wPt-3774 / 1.2 / -9.03
19.6 / aac/caa-2 / 2.2 / -11.37
23.6 / acg/cta-5 / 2.1 / -11.04
66.6 / wPt-8412 / 1.2 / 4.47 / 2.9 / 1.46 / 4.4 / 2.19
67.1 / gwm132b / 1.5 / 5.55 / 4.7 / 2.42
70.8 / agg/cat-8 / 4.6 / 1.83
71.9 / wPt-4218 / 1.5 / 5.61
72.5 / wPt-2899 / 1.5 / 5.61
75.4 / wPt-4764 / 1.4 / 0.68 / 5.2 / 1.87 / 7.5 / 2.93
77.0 / gwm518a / 1.4 / 5.13 / 1.2 / 0.56
80.7 / agg/cta-4 / 1.1 / 0.65 / 4.7 / 2.43
84.2 / aag/ctc-8 / 4.3 / 1.77
89.6 / aac/cac-2 / 1.5 / -7.77
93.4 / aca/caa-7 / 1.9 / -6.43
97.0 / agc/cta-10 / 1.6 / -9.20 / 1.1 / 0.60
99.4 / agc/cta-4 / 2.8 / -7.99
102.0 / aac/ctc-1 / 1.8 / -9.06
104.4 / aca/cta-3 / 1.8 / -9.08
109.8 / wPt-4924 / 1.0 / 0.32
111.0 / aca/cac-3 / 3.2 / -8.68 / 1.7 / 0.53 / 1.5 / 0.62
112.8 / agg/ctg-8 / 1.1 / 0.38
6D-a / 0.0 / gdm132 / 1.4 / 8.14
6.3 / gwm469 / 1.2 / -5.05 / 2.8 / -8.29 / 2.6 / -7.84 / 1.1 / 0.75
7A-a / 0.0 / agc/cag-9 / 1.2 / -0.57 / 1.1 / -0.74 / 1.0 / -0.38
21.6 / aca/cag-8 / 1.2 / -0.80 / 1.5 / -0.79 / 1.0 / -0.75
29.5 / agc/cag-6 / 1.8 / -0.84
55.2 / wPt-6931 / 3.0 / -1.01 / 1.1 / -0.59 / 1.8 / -0.95
92.4 / aag/cta-3 / 3.9 / 10.03 / 4.7 / 10.86 / 3.1 / 19.90 / 2.3 / -0.60
110.0 / barc121 / 4.2 / 9.32 / 4.7 / 11.47 / 4.1 / 19.96 / 1.3 / -0.37 / 1.3 / -0.66 / 1.7 / -0.42
130.7 / aca/cag-10 / 1.8 / 1.21
154.7 / gwm282 / 2.0 / 1.09
174.0 / wPt-4553 / 1.7 / -8.56 / 1.1 / 6.80 / 2.0 / 1.19
220.0 / aca/cta-10 / 2.1 / -7.10 / 1.4 / 0.88 / 1.4 / 1.00
239.0 / acc/cat-9 / 1.2 / 0.82
7B-a / 0.0 / gdm086 / 3.2 / 11.70 / 2.2 / -0.51 / 2.2 / -1.00
1.6 / aca/cac-7 / 3.3 / 12.39 / 1.3 / 5.26 / 1.8 / -0.47 / 1.7 / -0.89 / 3.3 / -1.05
7.9 / aca/cag-11 / 1.0 / -0.36
9.3 / acc/ctc-7 / 1.3 / 4.78 / 1.4 / -4.80 / 3.3 / -0.77 / 1.3 / -0.76
UA-a / 8.3 / acg/cta-6 / 1.1 / 6.88
14.0 / gdm035 / 1.0 / 7.17 / 1.7 / 6.18 / 2.8 / -1.17 / 2.5 / -0.58 / 1.3 / 0.67
UA-b / 17.6 / aag/ctg-17 / 1.2 / -4.43
1