Supplementary Table 1: Details of sequences used in phylogenetic analysis (full genome, Rep and CP)

GenBank
Accession # / Acronym / Virus name
J02057 / ACMV / African cassava mosaic virus
HQ113104 / BCSMV / Bromuscatharticus striate mosaic virus
HQ443515 / SCTAV / Spinach curly top Arizona virus
JQ707949 / BCTIV-A / Beet curly top Iran virus
JX945570 / BCTIV-B / Beet curly top Iran virus
JX458087 / BCTIV-C / Beet curly top Iran virus
JX945571 / BCTIV-D / Beet curly top Iran virus
M24597 / BCTV-CALogan / Beet curly top virus
JN817383 / BCTV-CO / Beet curly top virus
EU586261 / BCTV-Mld / Beet mild curly top virus
JX487184 / BCTV-PeCT / Pepper curly top virus
EU921828 / BCTV-PeYDV / Pepper yellow dwarf virus
AY548948 / BCTV-SpCT / Spinach curly top virus
X97203 / BCTV-Svr / Beet severe curly top virus
FJ545686 / BCTV-SvrPep / Beet severe curly top virus
AY134867 / BCTV-wor / Beet mild curly top virus
D00201 / BGYMV / Bean golden yellow mosaic virus
JQ920490 / CCDaV / Citrus chlorotic dwarf associated virus
AF029217 / CGMV / Cowpea golden mosaic virus
AM850136 / ChCDV / Chickpea chlorotic dwarf virus
AM501481 / CLCRV / Cotton leaf curl Rajasthan virus
DQ641692 / ClGMV / Clerodendrum golden mosaic virus
EU636712 / CoGMV / Corchorus golden mosaic virus
JN989420 / CpCAV / Chickpea chlorosis Australia virus
GU256530 / CpCV / Chickpea chlorosis virus-A
GU256532 / CpRV / Chickpea redleaf virus
JN989439 / CpYV / Chickpea yellows mastrevirus
M20021 / CSMV / Chloris striate mosaic virus.
JQ948091 / DCSMV / Digitariaciliaris striate mosaic virus
HM122238 / DDSMV / Digitariadidactyla striate mosaic virus
JX458740 / DfasMV / Dragonfly-associated mastrevirus
AM157413 / DoYMV / Dolichos yellow mosaic virus
M23022 / DSV / Digitaria streak virus
HF921459 / EcmlV / Euphorbia caput-medusae latent virus
FJ665632 / ECSV-A / Eragrostiscurvula streak virus
FJ665630 / ECSV-B / Eragrostiscurvula streak virus
JF508490 / EMSV / Eragrostis minor streak virus
EU244915 / ESV / Eragrostis streak virus
JX094280 / FbSLCV / French bean severe leaf curl virus
JQ901105 / GCFaV / Grapevine geminivirus
U49907 / HrCTV / Horseradish curly top virus
AB236325 / HYVV / Honeysuckle yellow vein virus
AY044133 / MaMPRV / Macroptilium mosaic Puerto Rico virus
D00800 / MiSC / Miscanthus streak virus
JQ624879 / MSRV / Maize streak Reunion virus
AF329881 / MSV / Maize streak virus
AM296025 / ODV / Oat dwarf virus
L39638 / PanSV-A / Panicum streak virus
JQ948087 / PDSMV / Paspalumdilatatum striate mosaic virus
JF905486 / PSMV / Paspalum striate mosaic virus
GQ273988 / SacSV / Saccharum streak virus
AF104036 / SPLCV / Sweet potato leaf curl virus
GU734126 / SpSCTV / Spinach severe curly top virus
AF239159 / SSEV / Sugarcane streak Egypt virus
JQ948051 / SSMV-1 / Sporobolus striate mosaic virus 1
JQ948052 / SSMV-2 / Sporobolus striate mosaic virus 2
AF072672 / SSRV / Sugarcane streak virus reunion
M82918 / SSV / Sugarcane streak virus
M81103 / TbYDV / Tobacco yellow dwarf virus
GU456689 / TCTV-A / Turnip curly top virus
JQ742019 / TCTV-B / Turnip curly top virus
KC108901 / TCTV-C / Turnip curly top virus
KC108902 / TCTV-D / Turnip curly top virus
K02029 / TGMV / Tomato golden mosaic virus
AB100304 / TLCJV / Tomato leaf curl Java virus
U15015 / TLCNDV / Tomato leaf curl New Delhi virus
AY044137 / TLCSV / Tomato leaf curl Sudan virus
AJ512761 / TLCYV / Tobacco leaf curl Yunnan virus
X84735 / TPCTV / Tomoato pseudo-curly top virus
AF130415 / TSLCV / Tomato severe leaf curl virus
AF311734 / TYLCCNV / Tomato yellow leaf curl China virus
X61153 / TYLCSV / Tomato yellow leaf curl Sardinia virus
EU445697 / USV / Urochloa streak virus
JQ361910 / WDIV / Wheat dwarf India virus
X02869 / WDV / Wheat dwarf virus