Supplementary Table 1 (Continued)
Supplementary Table 1 Taxa in this phylogenetic analysis with GenBank accession numbers. Ex-type strains are in bold, while authentic strains are marked with an asterisk (*).
Name used in GenBank / Name used inphylogenetic trees / Sources of culture / GenBank accession numbers
LSU / SSU / TEF1-α / ITS
Abrothallus parmeliarum / AB57 / KF816227 / KF816221 / KF816180
Abrothallus parmotrematis / AB1 / KF816231 / KF816225 / KF816185
Abrothallus buellianus / SPO 303 / KF816234 / KF816217 / KF816186
Acanthohelicospora pinicola / MFLUCC 10–0116 / KF301534 / KF301542 / KF301555 / KF301526
Acanthostigma chiangmaiensis / MFLUCC 10–0125 / JN865197 / JN865185 / KF301560 / JN865209
Acanthostigma filiforme / Neoacanthostigma filiforme# / ANM 101 / GQ850495 / – / – / –
Acanthostigma filiforme / Neoacanthostigma filiforme# / ANM 514 / GQ850494 / – / – / GQ856146
Acanthostigma minutum / Acanthostigmina minutum / ANM 238 / GQ850487 / – / – / –
Acanthostigma minutum / Acanthostigmina minutum / ANM 818 / GQ850488 / – / – / –
Acanthostigma minutum / Acanthostigmina minutum / ANM 880 / GQ850486 / – / – / –
Acanthostigma multiseptatum / Acanthostigmina multiseptatum# / ANM 475 / GQ850492 / – / – / GQ856145
Acanthostigma multiseptatum / Acanthostigmina multiseptatum# / ANM 665 / GQ850493 / – / – / GQ856144
Acanthostigma patagonicum / BBB MVB573 / JN127359 / – / – / JN127358
Acanthostigma perpusillum* / UAMH 7237 / AY856892 / AY856937 / – / AY916492
Acanthostigma scopulum / Acanthohelicospora scopulum# / ANM 95 / GQ850490 / – / – / –
Acanthostigma scopulum / Acanthohelicospora scopulum# / ANM 386 / GQ850489 / – / – / –
Acanthostigma septoconstrictum / Neoacanthostigma septoconstrictum# / ANM 536.1 / GQ850491 / – / – / GQ856143
Aigialus grandis / BCC 18419 / GU479774 / GU479738 / GU479838
Aliquandostipite khaoyaiensis / CBS 118232 / GU301796 / AF201453 / GU349048 / –
Aliquandostipite siamensiae / SS 81.02 / EF175666 / EF175645
Amniculicola immersa / CBS 123083 / FJ795498 / GU456295 / GU456273
Amniculicola parva / CBS 123092 / FJ795497 / GU296134 / GU349065
Anisomeridium ubianum / 94 / GU327709 / GU327682
Aplosporella prunicola / STE-U 6326 / EF564377
Aquaphila albicans* / BCC 3520 / DQ341102 / DQ341091 / – / DQ341098
Aquaphila albicans* / BCC 3543 / DQ341101 / DQ341093 / – / DQ341096
Supplementary Table 1 (continued)
Name used in GenBank / Name used inphylogenetic trees / Sources of Culture / GenBank accession numbers
LSU / SSU / TEF1-α / ITS
Asterina cestricola / TH 591 / GU586215 / GU586209
Asterina fuchsiae / TH 590 / GU586216 / GU586210
Asterina phenacis / TH 589 / GU586217 / GU586211
Asterina weinmanniae / TH 592 / GU586218 / GU586212
Asterina zanthoxyli / TH 561 / GU586219 / GU586213
Astrothelium confusum / 98 / GU327710 / GU327685
Bambusicola bambusae / MFLUCC 11–0614 / JX442035 / JX442039
Bimuria novae-zelandiae / CBS 107.79 / AY016356 / AY016338 / DQ471087
Botryobambusa fusicoccum / MFLUCC 11–0143 / JX646809 / JX646826
Botryosphaeria dothidea / CBS 115476 / DQ678051 / DQ677998 / DQ767637 / –
Botryosphaeria agaves / MFLUCC 11–0125 / JX646808 / JX646825
Capnodium coffeae / CBS 147.52 / DQ247800 / DQ247808 / DQ471089 / –
Catenulostroma abietis / CBS 459.93 / DQ678092 / DQ678040 / DQ677933
Cercospora beticola / CBS 116456 / DQ678091 / DQ678039 / DQ677932
Chlamydotubeufia huaikangplaensis / MFLUCC 10–0926 / JN865198 / JN865186 / – / JN865210
Chlamydotubeufia khunkornensis / MFLUCC 10–0117 / JN865189 / JN865177 / KF301565 / JN865201
Chlamydotubeufia khunkornensis / MFLUCC 10–0118 / JN865190 / JN865178 / KF301564 / JN865202
Cladosporium herbarum / CBS 399.80 / DQ678074 / DQ678022 / DQ677918
Cladosporium cladosporioides / CBS 170.54 / DQ678057 / DQ678004 / DQ677898
Cochliobolus heterostrophus / CBS 134.39 / AY544645 / AY544727 / DQ497603
Coleroa robertiani / CBS 458.64 / JQ036231
Cophinforma eucalypti / MFLUCC 11–0425 / JX646817 / JX646833
Dissoconium aciculare / CBS 204.89 / GU214419 / GU214523
Dothidea hippophaes / CBS 188.58 / DQ678048 / U42475 / DQ677887
Dothidea insculpta / CBS 189.58 / DQ247802 / DQ247810 / DQ471081
Dothidotthia aspera / CPC 12933 / EU673276 / EU673228
Dothidotthia symphoricarpi / CBS 119687 / EU673273 / EU673224
Supplementary Table 1 (continued)
Name used in GenBank / Name used inphylogenetic trees / Sources of Culture / GenBank accession numbers
LSU / SSU / TEF1-α / ITS
Dothiora cannabinae / CBS 737.71 / DQ470984 / DQ479933 / DQ471107
Dothiora ellyptica / CBS 736.71 / GU301811 / GU349013
Elsinoe centrolobi / CBS 222.50 / DQ678094 / DQ678041 / DQ677934
Elsinoe phaseoli / CBS 165.31 / DQ678095 / DQ678042 / DQ677935
Elsinoe veneta / CBS 150.27 / DQ767658 / DQ767651 / DQ767641
Entodesmium rude / CBS 650.86 / GU301812 / GU349012
Gibbera conferta / CBS 191.53 / GU301814 / GU296150 / GU349041
Gloniopsis subrugosa / CBS 123346 / FJ161210 / FJ161170
Glonium stellatum / CBS 207.34 / FJ161179 / FJ161140 / FJ161095
Guignardia bidwellii / CBS 237.48 / DQ678085 / DQ678034
Guignardia citricarpa / CBS 102374 / GU301815 / GU296151 / GU349053
Guignardia gaultheriae / CBS 447.70 / DQ678089
Helicangiospora lignicola / MFLUCC 11–0378 / KF301531 / KF301539 / KF301552 / KF301523
Helicoma ambiens / UAMH 10533 / AY856916 / AY856955 / – / AY916451
Helicoma chiangraiense / MFLUCC 10–0115 / JN865188 / JN865176 / KF301551 / JN865200
Helicoma chlamydosporum / CBS 160.69 / AY856875 / AY856923 / – / –
Helicoma conicodentatum / UAMH 10534 / AY856869 / AY856918 / – / AY916450
Helicoma dennisii / NBRC 30667 / AY856897 / – / – / AY916455
Helicoma fagacearum / MFLUCC 11–0379 / KF301532 / KF301540 / KF301553 / KF301524
Helicoma intermedium / Tubeufia intermedium / ATCC 22621 / AY856912 / – / – / –
Helicoma miscanthi / MFLUCC 11–0375 / KF301533 / KF301541 / KF301554 / KF301525
Helicoma muelleri* / CBS 964.69 / AY856877 / – / – / AY916453
Helicoma siamense / MFLUCC 10–0120 / JN865192 / JN865180 / KF301558 / JN865204
Helicoma vaccinii / CBS 216.90 / AY856879 / AY856926 / – / AY916486
Helicomyces lilliputeus / Tubeufia lilliputeus / NBRC 32664 / AY856899 / AY856942 / – / AY916483
Helicomyces roseus / Tubeufia roseus / BCC 3381 / AY787932 / – / – / –
Helicomyces roseus / Tubeufia roseus / BCC 8808/SS1014 / AY856910 / – / – / AY916481
Supplementary Table 1 (continued)
Name used in GenBank / Name used inphylogenetic trees / Sources of culture / GenBank accession numbers
LSU / SSU / TEF1-α / ITS
Helicomyces roseus* / CBS 283.51 / DQ678083 / DQ678032 / DQ677928 / –
Helicosporium aureum (citreo-viride) / Acanthohelicospora aureum / NBRC 7098 / AY856894 / – / – / AY916478
Helicosporium guianense / CBS 269.52 / AY856893 / AY856938 / – / AY916487
Helicosporium guianense / Acanthohelicospora guianense / UAMH 1699 / AY856891 / – / – / AY916479
Helicosporium indicum / Helicomyces indicum / CBS 374.93 / AY856885 / – / – / AY916477
Helicosporium linderi / Helicoma linderi / NBRC 9207 / AY856895 / – / – / AY916454
Helicosporium talbotii / Helicomyces talbotii / MUCL 33010 / AY856874 / – / – / AY916465
Helicosporium vegetum / BCC 3332 / AY856907 / – / – / AY916490
Helicosporium vegetum / BCC 8125 / AY856909 / – / – / AY916491
Helicosporium vegetum* / CBS 941.72 / AY856883 / – / – / AY916488
Helicosporium vegetum / NBRC 30345 / AY856896 / – / – / –
Hysterium angustatum / CBS 236.34 / FJ161180 / GU397359 / FJ161096
Hysterobrevium smilacis / CBS 114601 / FJ161174 / FJ161135 / FJ161091
Hysteropatella clavispora / CBS 247.34 / AY541493 / DQ678006 / DQ677901
Hysteropatella elliptica / CBS 935.97 / DQ767657 / EF495114 / DQ767640
Jahnula bipileata / AF 220-1 / EF175656 / EF175634
Jahnula aquatica / R 68 -1 / EF175655 / EF175633
Kellermania macrospora / CBS 131716 / JX444874 / JX444902
Kellermania yuccigena / CBS 131727 / JX444883 / JX444908
Lasiodiplodia theobromae / CBS 164.96 / EU673253 / EU673196
Lentithecium aquaticum / CBS 123099 / GU301823 / GU296156 / GU349068
Leptosphaeria doliolum / CBS 505.75 / GU301827 / GU296159 / GU349069
Leptosphaeria dryadis / CBS 643.86 / GU301828 / GU349009
Leptosphaerulina australis / CBS 317.83 / GU301830 / GU296160 / GU349070
Leptoxyphium fumago / CBS 123.26 / GU301831 / GU214535 / GU349051
Lichenoconium aeruginosum / CBS 129239 / HQ174269 / HQ174268
Lichenoconium erodens / CBS 128704 / HQ174267 / HQ174266
Supplementary Table 1 (continued)
Name used in GenBank / Name used inphylogenetic trees / Sources of culture / GenBank accession numbers
LSU / SSU / TEF1-α / ITS
Lichenoconium lecanorae / CBS 128024 / HQ174263 / HQ174262
Lichenothelia cf. calcarea / L 1323 / KC015061 / KC015081
Lichenothelia cf. calcarea / L 1324 / KC015062 / KC015082
Lichenothelia convexa / L 1608 / KC015070 / KC015085
Lichenothelia convexa / L 1609 / KC015071 / KC015086
Lindgomyces ingoldianus / ATCC 200398 / AB521736 / AB521719
Lophiostoma quadrinucleatum / GKM 1233 / GU385184 / GU327760
Lophiostoma scabridisporum / BCC 22835 / GQ925844 / GQ925831 / GU479857
Lophium mytilinum / CBS 269.34 / DQ678081 / DQ678030 / DQ677926
Manglicola guatemalensis / BCC 20157 / FJ743450 / FJ743444
Manglicola guatemalensis / BCC 20156 / FJ743448 / FJ743442
Massarina eburnea / CBS 473.64 / GU301840 / GU296170 / GU349040
Megalotremis verrucosa / 104 / GU327718 / GU327694
Melanomma pulvis-pyrius / CBS 124080 / GU456323 / GU456302 / GU456265
Melanops tulasnei / CBS 116805 / FJ824764 / FJ824761
Microthyrium microscopicum / CBS 115976 / GU301846 / GU296175 / GU349042
Montagnula opulenta / CBS 168.34 / DQ678086 / AF164370
Morosphaeria ramunculicola / JK 5304B / GU479794 / GU479760
Mycomicrothelia miculiformis / 101B / GU327720 / GU327696
Mycomicrothelia obovata / 95 / GU327721 / GU327697
Mycosphaerella graminicola / CBS 292.38 / DQ678084 / DQ678033
Myriangium duriaei / CBS 260.36 / DQ678059 / AY016347 / DQ677900
Myriangium hispanicum / CBS 247.33 / GU301854 / GU296180 / GU349055
Mytilinidion acicola / EB 0349 / GU323209 / GU323185
Mytilinidion mytilinellum / CBS 303.34 / FJ161184 / FJ161144 / FJ161100
Natipusilla decorospora / AF236-1a / HM196369 / HM196376
Natipusilla limonensis / AF286-1a / HM196370 / HM196377
Supplementary Table 1 (continued)
Name used in GenBank / Name used inphylogenetic trees / Sources of
culture / GenBank accession numbers
LSU / SSU / TEF1-α / ITS
Natipusilla limonensis / PE3-2a / JX474861 / JX474867
Neoacanthostigma fusiforme / MFLUCC 11–0510 / KF301537 / KF301546 / – / KF301529
Neoastrosphaeriella krabiensis / MFLUCC 11–0025 / JN846729 / JN846739
Ophiosphaerella herpotricha / CBS 620.86 / DQ678062 / DQ678010 / DQ677905
Patellaria atrata / CBS 958.97 / GU301855 / GU296181 / GU349038
Phaeosphaeria oryzae / CBS 110110 / GQ387591 / GQ387530
Phaeotrichum benjaminii / CBS 541.72 / AY004340 / AY016348 / DQ677892
Phoma betae / CBS 109410 / EU754178 / EU754079 / GU349075
Phoma exigua / CBS 431.74 / EU754183 / EU754084 / GU349080
Pleospora herbarum / CBS 191.86 / DQ247804 / DQ247812 / DQ471090
Protoventuria barriae / CBS 300.93 / JQ036232
Psiloglonium araucanum / CBS 112412 / FJ161172 / FJ161133 / FJ161089
Psiloglonium simulans / CBS 206.34 / FJ161178 / FJ161139 / FJ161094
Ramichloridium apiculatum / CBS 156.59 / EU041848 / GU296189
Saccharata proteae / CBS 115206 / GU301869 / GU296194 / GU349030
Schismatomma decolorans / DUKE 47570 / AY548815 / AY548809 / DQ883725
Scorias spongiosa / CBS 325.33 / DQ678075 / DQ678024 / DQ677920
Sydowia polyspora / CBS 116.29 / DQ678058 / DQ678005 / DQ677899
Tamhinispora indica / NFCCI 2924 / KC469283 / – / – / KC469282
Teratosphaeria associata / CBS 112224 / GU301874 / GU296200 / GU349025
Thaxteriella helicoma / Helicoma rugosa# / JCM 2739 / AY856888 / AF201455 / – / –
Thaxteriella helicoma / Helicoma rugosa# / UBC F13877 / AY856917 / AY916452 / – / AY916452
Thaxteriella inthanonensis / Helicoma inthanonense# / MFLUCC 11–0003 / JN865187 / JN865187 / – / JN865211
Thaxteriellopsis lignicola / MFLUCC 10–0121 / JN865193 / JN865181 / – / JN865205
Thaxteriellopsis lignicola / MFLUCC 10–0122 / JN865194 / JN865182 / KF301563 / JN865206
Thaxteriellopsis lignicola / MFLUCC 10–0123 / JN865195 / JN865183 / KF301562 / JN865207
Thaxteriellopsis lignicola / MFLUCC 10–0124 / JN865196 / JN865184 / KF301561 / JN865208
Supplementary Table 1 (continued)
Name used in GenBank / Name used inphylogenetic trees / Sources of
culture / GenBank accession numbers
LSU / SSU / TEF1-α / ITS
Trematosphaeria pertusa / CBS 122371 / FJ201992 / FJ201993 / GU349085
Trichodelitschia bisporula / CBS 262.69 / GU348996 / GU349000 / GU349020
Trichodelitschia munkii / Kruys 201 / DQ384096 / DQ384070
Trypethelium eluteriae / 111 / GU327726 / GU327704
Trypethelium tropicum / 25 / GU327730 / GU327708
Tubeufia asiana / Aquaphila asiana# / BCC 3463 / DQ341100 / – / – / DQ341097
Tubeufia cerea / Helicosporium cereum# / CBS 254.75 / DQ470982 / DQ471034 / DQ471105 / –
Tubeufia cerea / Helicosporium cereum# / NBRC 9014 / AY856903 / AY856947 / – / AY916489
Tubeufia chiangmaiensis / MFLUCC 11–0514 / KF301538 / KF301543 / KF301557 / KF301530
Tubeufia cylindrothecia / BCC 3559 / AY849965 / – / – / –
Tubeufia helicomyces / CBS 245.49 / DQ767654 / DQ767649 / DQ767638
Tubeufia javanica / MFLUCC 12–0545 / KJ880036 / KJ880035 / KJ880037 / KJ880034
Tubeufia khunkornensis / Helicoma khunkornense# / MFLUCC 10–0119 / JN865191 / JN865179 / – / JN865203
Tubeufia paludosa / Helicoma paludosa / ANM 1169 / GQ850484 / GU566745 / – / –
Tubeufia paludosa / Helicoma paludosa / ANM 196 / GQ850482 / – / – / –
Tubeufia paludosa / Helicomyces paludosa# / CBS 120503/AR 4206 / DQ341103 / DQ341094 / – / DQ341095
Tubeufia paludosa / Helicomyces paludosa# / CBS 120503 / GU301877 / GU296203 / GU349024 / –
Tubeufia paludosa / Helicoma paludosa / HKUCC 9118 / AY849966 / – / – / –
Uwebraunia commune / CBS 132091 / JQ622093
Venturia inaequalis / CBS 815.69 / GU301878 / GU296204 / GU349023 / –
#Formally synonymised in this paper
Abbreviations of isolates and culture collections: A.N. Miller: ANM; American Type Culture Collection, Virginia, USA: ATCC; Bahía Blanca Biology Herbarium: BBB; BIOTEC Culture Collection, Bangkok, Thailand: BCC; Centraalbureau voor Schimmelcultures, Utrecht, The Netherlands: CBS; Collection of Pedro Crous housed at CBS: CPC; Duke University Herbarium, Durham, North Carolina, U.S.A: DUKE; G.K. Mugambi: GKM;The University of Hong Kong Culture Collection, Hong Kong, China: HKUCC; the Japan Collection of Microorganisms, Japan: JCM; J. Kohlmeyer: JK; Mae Fah Luang University Culture Collection, Thailand: MFLUCC; Belgian Coordinated Collections of Microorganisms: MUCL; NITE Biological Resource Centre, Japan: NBRC; Fungal Culture Collection of India: NFCCI; Culture collection of the Department of Plant Pathology, University of Stellenbosch, South Africa: STE-U; University of Alberta Microfungus Collection and Herbarium, Edmonton, Alberta, Canada: UAMH; University of British Columbia Herbarium, Canada: UBC F.