Supplementary Information Table 7Epistatic QTLs for seed yield and yield related traits identified by ICIM in the BQDH population
Trait / Chr. / Marker interval-1 / Position-1 / Chr. / Marker interval-2 / Position-2 / AA / PVE(%)09SNLB / A9 / BnGMS124-CB10029 / 75 / C9 / sNRG42-BnGMS351 / 60 / 1.33 / 7.45
09BNLB / A2 / CB10540-B059L17 / 90 / A10 / OL10B11-niab034 / 0 / 0.39 / 8.44
09SYLB / A4 / BoGMS1041-BnGMS115 / 60 / A7 / HAU34-1-sR0282Ra / 10 / 0.86 / 9.66
10SYLB / A2 / BeA2ssr23-FITO372 / 70 / C3 / BnGMS461-BnGMS584a / 120 / 0.50 / 41.62
11SYLB / A3 / B055N13-3-niab115a / 5 / A7 / BRMS005-sR7223b / 60 / -0.70 / 15.96
10PHLB / C4 / em15me7b-BoGMS0326 / 65 / C6 / MR133.1-BoGMS0614 / 45 / 6.13 / 10.14
09BEC / C1 / BoGMS1565a-BoGMS0292 / 20 / C8 / BnGMS375-BoGMS1460 / 80 / 0.10 / 9.09
10BEC / A3 / CB10036c-MR123a / 30 / C9 / CB10064b-FITO516 / 10 / 0.10 / 14.98
10BEC / A5 / B023F24b-CNU344 / 40 / C3 / BnGMS461-BnGMS584a / 110 / -0.07 / 28.53
11BEC / A6 / BRMS030-BnGMS132 / 75 / C1 / BoGMS1294-CB10369b / 0 / 0.07 / 12.44
11BEC / A10 / CB10524-niab123 / 35 / C3 / CB10079b-CB10358 / 5 / -0.09 / 16.81
09BNNB / C6 / NIP5;1-Bn4b-MR133.1 / 40 / C9 / sN1988-em5me28c / 35 / -0.41 / 9.07
11BNNB / A7 / BRMS040-MD20 / 40 / C2 / sR12095a-B2-S2-1 / 0 / -0.41 / 7.19
10SNNB / A7 / niab030-CNU331 / 80 / C6 / BoGMS1497-O6Au-4 / 20 / 1.24 / 5.06
10SNNB / A10 / BnGMS385-sN8474 / 55 / C5 / sORH13b-BoGMS0039 / 35 / -1.39 / 7.66
11SNNB / A2 / B070J11-2-BRAS011a / 60 / A7 / HAU34-1-sR0282Ra / 0 / 1.72 / 9.36
11SNNB / A3 / B043L22-CNU223b / 110 / A4 / CB10493a-BoGMS0252b / 0 / 1.55 / 7.86
11SNNB / A7 / CNU331-Nip5;1-Br3a / 85 / C6 / BoGMS0347b-BRMS036 / 25 / 1.83 / 11.12
11SNNB / C1 / CB10369a-BoGMS1565a / 15 / C3 / BoGMS0570-BnGMS289 / 165 / 1.59 / 7.62
10SYNB / A6 / CNU400-CNU325a / 30 / C3 / BnGMS461-BnGMS584a / 100 / -1.03 / 14.06
10SYNB / A7 / niab030-CNU331 / 80 / C6 / BoGMS1497-O6Au-4 / 20 / 1.11 / 15.22
11SYNB / A1 / CNU107-AS0 / 75 / C5 / sS2129-S010I09-C4-1b / 85 / 1.16 / 12.71
11SYNB / A2 / BoGMS0987-BeA2ssr09 / 50 / C3 / MR123b-HBr025 / 60 / -0.94 / 12.64
10SWNB / A2 / B070J11-2-BRAS011a / 60 / A9 / HBr116-CNU372 / 25 / -0.21 / 9.97
10PHNB / A10 / niab034-B030F10 / 5 / C4 / B050K06-em14me20 / 55 / -6.08 / 10.46
10PHNB / C1 / BoGMS1294-CB10369b / 5 / C7 / BoGMS0381-BoGMS0108 / 20 / -5.87 / 10.37
10PNNB / A3 / BnGMS417b-BRAS102a / 80 / C5 / sS2129-S010I09-C4-1b / 75 / -20.37 / 11.60
Chr., chromosome;PVE, Phenotyping variation explained; AA, additive-additive epistatic effect.Marker interval with bold means locus with single main effect.Markers in blue color indicated that the combination were associated with epistatic interaction identified both in BQDH and BERIL populations.