Supplementary Database 3.Predicted targets of Chlamydomonas miRNAs/Candidates
Within each entry, the first line specifies the miRNA/Candidate ID followed by its sequence (5’-3’) and its pairing region in the target (given as [Start, End] from the 5' end of the transcript). The second line indicates the target annotation, and the final line gives the alignment of the miRNA to the predicted target site.
miR906-5pCGGTTGGTGGGCGTGATCAGCTar pos: 1155 1175 Tar region: CDS
>jgi|Chlre3|147084|Chlre2_kg.scaffold_18000009
5' GCUGUA-CACGCCCACCAACUG 3'
|||| | |||||||||||||:|
3' CGAC-UAGUGCGGGUGGUUGGC 5'
miR906-5pCGGTTGGTGGGCGTGATCAGCTar pos: 1875 1895 Tar region: CDS
>jgi|Chlre3|195655|SAN_e_gwW.26.4.1 {COG4} Component of oligomeric golgi complex 4
5' GCUGCUCACGCCCGCCAACUG 3'
|||| ||||||||:|||||:|
3' CGACUAGUGCGGGUGGUUGGC 5'
miR906-5pCGGTTGGTGGGCGTGATCAGCTar pos: 2164 2185 Tar region: CDS
>jgi|Chlre3|173855|fgenesh2_pg.C_scaffold_21000150
5' GCUGCUCCACGCCCACCAACCC 3'
|||| | ||||||||||||||
3' CGACUA-GUGCGGGUGGUUGGC 5'
miR909-5pATGCAAACATGACCCTGAATGTar pos: 1874 1894 Tar region: CDS
>jgi|Chlre3|177930|fgenesh2_pg.C_scaffold_45000065
5' CAUUCAGGGUCAUGUUUGCAU 3'
|||||||||||||||||||||
3' GUAAGUCCCAGUACAAACGUA 5'
miR910AGCAGCGTCGGGCTCGACCGCTar pos: 205 225 Tar region: CDS
>jgi|Chlre3|181462|fgenesh2_pg.C_scaffold_1029000001
5' GCGCGU-GAGCCCGACGCUGCU 3'
||| || |||||||||||||||
3' CGC-CAGCUCGGGCUGCGACGA 5'
miR914CGGGCGCGCCGGAATCCGTGGTar pos: 1529 1549 Tar region: CDS
>jgi|Chlre3|144677|Chlre2_kg.scaffold_11000222
5' CCACGGCCGCCGGCGCGCCCG 3'
|||||| ||||||||||||
3' GGUGCCUAAGGCCGCGCGGGC 5'
miR919-3p.1TACCCTCCAGCAGCTTGCTACTar pos: 3441 3461 Tar region: CDS
>jgi|Chlre3|137221|estExt_gwp_1W.C_170117 {IDA2} Flagellar inner arm dynein 1 heavy chain beta
5' GUA-CAAGCUGCUGGAGCGGUA 3'
||| ||||||||||||| ||||
3' CAUCGUUCGACGACCUC-CCAU 5'
miR919-3p.1TACCCTCCAGCAGCTTGCTACTar pos: 7202 7222 Tar region: CDS
>jgi|Chlre3|153169|Chlre2_kg.scaffold_55000030
5' GUAGCAAGCAGCUGGAGGCUA 3'
||||||||| |||||||| ||
3' CAUCGUUCGACGACCUCCCAU 5'
Candidate 3TCGATGTGCAGGGCGTGTGGTar pos: 117 137 Tar region: CDS
>jgi|Chlre3|115035|e_gwW.12.215.1
5' CCACACGCCGCUGCACAUCCA 3'
||||||||| ||||||||| |
3' GGUGUGCGG-GACGUGUAGCU 5'
Candidate 3TCGATGTGCAGGGCGTGTGGTar pos: 1254 1274 Tar region: CDS
>jgi|Chlre3|194339|estExt_fgenesh2_pg.C_630037
5' CCACAGGCUCCUGCACAUCGU 3'
||||| || |||||||||||
3' GGUGUGCG-GGACGUGUAGCU 5'
Candidate 8TGATGGTGCAGATGCGGCTGGTar pos: 2329 2348 Tar region: CDS
>jgi|Chlre3|172775|fgenesh2_pg.C_scaffold_19000174
5' CC-GCCGCCUCUGCACCAUCC 3'
|| ||||| |||||||||||
3' GGUCGGCGUAGACGUGGUAGU 5'
Candidate 8TGATGGTGCAGATGCGGCTGGTar pos: 275 295 Tar region: CDS
>jgi|Chlre3|112829|e_gwW.3.56.1 {EF-Sec}
5' CCAGCCUCAUCCGCACCAUCA 3'
|||||| |||| |||||||||
3' GGUCGGCGUAGACGUGGUAGU 5'
Candidate 8TGATGGTGCAGATGCGGCTGGTar pos: 729 749 Tar region: CDS
>jgi|Chlre3|147485|Chlre2_kg.scaffold_19000159
5' CCAGCCGCACCCGCACCAUCA 3'
||||||||| | |||||||||
3' GGUCGGCGUAGACGUGGUAGU 5'
Candidate 9TGCTGGTCAAACCGGTGGTGGTar pos: 464 483 Tar region: CDS
>jgi|Chlre3|159889|acegs_kg.scaffold_61000001 {FAP274} Flagellar Associated Protein
5' CC-CCACCGGUUUCACCAGCA 3'
|| |||||||||| |||||||
3' GGUGGUGGCCAAACUGGUCGU 5'
Candidate 15GGGAGGCGGGGGCAGGCGCGGTar pos: 1097 1117 Tar region: CDS
>jgi|Chlre3|195370|estExt_fgenesh2_pg.C_70a0015
5' CCGCG-CUGGCCCCCGCCUCCG 3'
||||| || ||||||||||||
3' GGCGCGGA-CGGGGGCGGAGGG 5'
Candidate 15GGGAGGCGGGGGCAGGCGCGGTar pos: 2218 2237 Tar region: CDS
>jgi|Chlre3|192029|estExt_fgenesh2_pg.C_270187 matrix metalloproteinase-like protein
5' CCUCGCCU-CCCCCGCCUCCC 3'
|| ||||| ||||||||||||
3' GGCGCGGACGGGGGCGGAGGG 5'
Candidate 15GGGAGGCGGGGGCAGGCGCGGTar pos: 341 360 Tar region: CDS
>jgi|Chlre3|38371|gwH.22.7.1
5' CCGCGCC-GCCGCCGCCUCCC 3'
||||||| ||| |||||||||
3' GGCGCGGACGGGGGCGGAGGG 5'
Candidate 15GGGAGGCGGGGGCAGGCGCGGTar pos: 3681 3700 Tar region: CDS
>jgi|Chlre3|168713|fgenesh2_pg.C_scaffold_2000359
5' CCGCGCCUCCCCCCGCC-CCC 3'
|||||||| |||||||| |||
3' GGCGCGGACGGGGGCGGAGGG 5'
Candidate 15GGGAGGCGGGGGCAGGCGCGGTar pos: 5783 5803 Tar region: CDS
>jgi|Chlre3|193537|estExt_fgenesh2_pg.C_440080 {CYG6} putative signal transduction protein
5' CCGCGCC-GCCCUCCGCCUCCC 3'
||||||| |||| |||||||||
3' GGCGCGGACGGG-GGCGGAGGG 5'
Candidate 15GGGAGGCGGGGGCAGGCGCGGTar pos: 727 745 Tar region: CDS
>jgi|Chlre3|121201|e_gwW.44.59.1
5' CC-CGCCU-CCCCCGCCUCCC 3'
|| ||||| ||||||||||||
3' GGCGCGGACGGGGGCGGAGGG 5'
Candidate 18TGGGTGCGGGCGACCATCGCGCTar pos: 1550 1571 Tar region: CDS
>jgi|Chlre3|196080|SAN_fgenesh2_pg.C_scaffold_45000013 RING and FYVE domain containing protein
5' GC-CUGGUGGUCGCCCGCACCCA 3'
|| | |:||||||||||||||||
3' CGCG-CUACCAGCGGGCGUGGGU 5'
Candidate 19CACCTGCAAAGCTCGGCGAGCTar pos: 441 459 Tar region: CDS
>jgi|Chlre3|154928|Chlre2_kg.scaffold_100000010
5' GCUC-CCGA-UUUUGCAGGUG 3'
|||| |||| :||||||||||
3' CGAGCGGCUCGAAACGUCCAC 5'
Candidate 20GCAGCGAGGGGCCGCGCGCGGTar pos: 163 184 Tar region: CDS
>jgi|Chlre3|107624|e_gwH.61.4.1
5' CUCGCGCGCGGCCACUCGCUGC 3'
| ||||||||||| ||||||||
3' G-GCGCGCGCCGGGGAGCGACG 5'
Candidate 20GCAGCGAGGGGCCGCGCGCGGTar pos: 200 218 Tar region: CDS
>jgi|Chlre3|196676|DNE_Chlre2_kg.scaffold_41000082 {CYP737A1} cytochrome P450, unkown function, in CYP85 clan
5' CCGC-CGCGGCCCC-CGCUGC 3'
|||| ||||||||| ||||||
3' GGCGCGCGCCGGGGAGCGACG 5'
Candidate 20GCAGCGAGGGGCCGCGCGCGGTar pos: 2795 2813 Tar region: CDS
>jgi|Chlre3|176340|fgenesh2_pg.C_scaffold_31000253
5' CCGCG-GCGG-CCCUCGCUGC 3'
||||| |||| ||||||||||
3' GGCGCGCGCCGGGGAGCGACG 5'
Candidate 20GCAGCGAGGGGCCGCGCGCGGTar pos: 425 445 Tar region: CDS
>jgi|Chlre3|141665|Chlre2_kg.scaffold_5000075
5' CCAGC-CGCGGCCCCUCGCUGU 3'
|| || |||||||||||||||:
3' GG-CGCGCGCCGGGGAGCGACG 5'
Candidate 20GCAGCGAGGGGCCGCGCGCGGTar pos: 627 645 Tar region: CDS
>jgi|Chlre3|151890|Chlre2_kg.scaffold_41000082
5' CCGC-CGCGGCCCC-CGCUGC 3'
|||| ||||||||| ||||||
3' GGCGCGCGCCGGGGAGCGACG 5'
Candidate 22TCAGCGTCACGCCGTGAGTCGTar pos: 1387 1408 Tar region: CDS
>jgi|Chlre3|147985|Chlre2_kg.scaffold_20000127
5' CGGCAGCACGGCGUGACGCUGA 3'
||:| ||||||||||||||||
3' GCUG-AGUGCCGCACUGCGACU 5'
Candidate 22TCAGCGTCACGCCGTGAGTCGTar pos: 2325 2347 Tar region: CDS
>jgi|Chlre3|192228|estExt_fgenesh2_pg.C_290076
5' CGACUUCACGGUCGUGACGCUGG 3'
|||| |||||| ||||||||||:
3' GCUG-AGUGCC-GCACUGCGACU 5'
Candidate 22TCAGCGTCACGCCGTGAGTCGTar pos: 3129 3148 Tar region: CDS
>jgi|Chlre3|24252|estExt_fgenesh1_pm.C_250005 {ODA4} Flagellar outer dynein arm heavy chain beta
5' CGAC-AACGGCGUGACGCUGC 3'
|||| ||||||||||||||
3' GCUGAGUGCCGCACUGCGACU 5'
Candidate 22TCAGCGTCACGCCGTGAGTCGTar pos: 362 382 Tar region: CDS
>jgi|Chlre3|165870|fgenesh2_pg.C_scaffold_8000147
5' CGUCUCGCGGCGUGGCGCUGA 3'
|| |||:|||||||:||||||
3' GCUGAGUGCCGCACUGCGACU 5'
Candidate 22TCAGCGTCACGCCGTGAGTCGTar pos: 782 804 Tar region: CDS
>jgi|Chlre3|195337|estExt_fgenesh2_pg.C_8570001 {FAP242} Coiled-Coil Flagellar Associated Protein
5' CGACUUCACGGUCGUGACGCUGG 3'
|||| |||||| ||||||||||:
3' GCUG-AGUGCC-GCACUGCGACU 5'
Candidate 28AAGAAGGCGAGCGACTTGTCGTar pos: 132 152 Tar region: CDS
>jgi|Chlre3|168755|fgenesh2_pg.C_scaffold_2000401
5' CGACAAGUCGCUCGCCUUCUU 3'
|||||||||||||||||||||
3' GCUGUUCAGCGAGCGGAAGAA 5'
Candidate 28AAGAAGGCGAGCGACTTGTCGTar pos: 132 152 Tar region: CDS
>jgi|Chlre3|172225|fgenesh2_pg.C_scaffold_1000846
5' CGACAAGUCGCUCGCCUUCUU 3'
|||||||||||||||||||||
3' GCUGUUCAGCGAGCGGAAGAA 5'
Candidate 28AAGAAGGCGAGCGACTTGTCGTar pos: 132 152 Tar region: CDS
>jgi|Chlre3|178253|fgenesh2_pg.C_scaffold_50000059
5' CGACAAGCCGCUCGCCUUCUU 3'
||||||| |||||||||||||
3' GCUGUUCAGCGAGCGGAAGAA 5'
Candidate 28AAGAAGGCGAGCGACTTGTCGTar pos: 132 152 Tar region: CDS
>jgi|Chlre3|178652|fgenesh2_pg.C_scaffold_51000105
5' CGACAAGUCGCUCGCCUUCUU 3'
|||||||||||||||||||||
3' GCUGUUCAGCGAGCGGAAGAA 5'
Candidate 28AAGAAGGCGAGCGACTTGTCGTar pos: 60 80 Tar region: CDS
>jgi|Chlre3|169442|fgenesh2_pg.C_scaffold_10000244
5' CGACAAGUCGCUCGCCUUCUU 3'
|||||||||||||||||||||
3' GCUGUUCAGCGAGCGGAAGAA 5'
Candidate 28AAGAAGGCGAGCGACTTGTCGTar pos: 60 80 Tar region: CDS
>jgi|Chlre3|176288|fgenesh2_pg.C_scaffold_31000201
5' CGACAAGUCGCUCGCCUUCUU 3'
|||||||||||||||||||||
3' GCUGUUCAGCGAGCGGAAGAA 5'
Candidate 28AAGAAGGCGAGCGACTTGTCGTar pos: 60 80 Tar region: CDS
>jgi|Chlre3|178562|fgenesh2_pg.C_scaffold_51000015
5' CGACAAGUCGCUCGCCUUCUU 3'
|||||||||||||||||||||
3' GCUGUUCAGCGAGCGGAAGAA 5'
Candidate 29TCACGATCCAGTCACCGGCGTar pos: 15 34 Tar region: CDS
>jgi|Chlre3|169442|fgenesh2_pg.C_scaffold_10000244
5' CGCCGGUGACUGGAUCGUGA 3'
||||||||||||||||||||
3' GCGGCCACUGACCUAGCACU 5'
Candidate 29TCACGATCCAGTCACCGGCGTar pos: 15 34 Tar region: CDS
>jgi|Chlre3|176288|fgenesh2_pg.C_scaffold_31000201
5' CGCCGGUGACUGGGUCGUGA 3'
|||||||||||||:||||||
3' GCGGCCACUGACCUAGCACU 5'
Candidate 29TCACGATCCAGTCACCGGCGTar pos: 15 34 Tar region: CDS
>jgi|Chlre3|178562|fgenesh2_pg.C_scaffold_51000015
5' CGCCGGUGACUGGGUCGUGA 3'
|||||||||||||:||||||
3' GCGGCCACUGACCUAGCACU 5'
Candidate 29TCACGATCCAGTCACCGGCGTar pos: 87 106 Tar region: CDS
>jgi|Chlre3|168755|fgenesh2_pg.C_scaffold_2000401
5' CGCCGGUGCCUGGGUCGUGA 3'
|||||||| ||||:||||||
3' GCGGCCACUGACCUAGCACU 5'
Candidate 29TCACGATCCAGTCACCGGCGTar pos: 87 106 Tar region: CDS
>jgi|Chlre3|172225|fgenesh2_pg.C_scaffold_1000846
5' CGCCGGUGACUGGGUCGUGA 3'
|||||||||||||:||||||
3' GCGGCCACUGACCUAGCACU 5'
Candidate 29TCACGATCCAGTCACCGGCGTar pos: 87 106 Tar region: CDS
>jgi|Chlre3|178253|fgenesh2_pg.C_scaffold_50000059
5' CGCCGGUGACUGGGUCGUGA 3'
|||||||||||||:||||||
3' GCGGCCACUGACCUAGCACU 5'
Candidate 29TCACGATCCAGTCACCGGCGTar pos: 87 106 Tar region: CDS
>jgi|Chlre3|178652|fgenesh2_pg.C_scaffold_51000105
5' CGCCGGUGCCUGGGUCGUGA 3'
|||||||| ||||:||||||
3' GCGGCCACUGACCUAGCACU 5'
Candidate 30TTCGATGTGCTGTAACACAGGTar pos: 60 81 Tar region: CDS
>jgi|Chlre3|178253|fgenesh2_pg.C_scaffold_50000059
5' ACAUGUGUUACAGCACAUCGAG 3'
| ||||||||||||||||||:
3' GG-ACACAAUGUCGUGUAGCUU 5'
Candidate 30TTCGATGTGCTGTAACACAGGTar pos: 61 81 Tar region: CDS
>jgi|Chlre3|178652|fgenesh2_pg.C_scaffold_51000105
5' CCUGUGUUACAGCACCUCGAG 3'
||||||||||||||| ||||:
3' GGACACAAUGUCGUGUAGCUU 5'
Candidate 32TCAACCAAAGGGCCTTTGCGGTar pos: 15 35 Tar region: CDS
>jgi|Chlre3|168755|fgenesh2_pg.C_scaffold_2000401
5' CCGCAAAGGCCCGUUGGUUGA 3'
|||||||||||| ||||||||
3' GGCGUUUCCGGGAAACCAACU 5'
Candidate 32TCAACCAAAGGGCCTTTGCGGTar pos: 15 35 Tar region: CDS
>jgi|Chlre3|172225|fgenesh2_pg.C_scaffold_1000846
5' CCGCAAAGGCCCGUUGGUUGA 3'
|||||||||||| ||||||||
3' GGCGUUUCCGGGAAACCAACU 5'
Candidate 32TCAACCAAAGGGCCTTTGCGGTar pos: 15 35 Tar region: CDS
>jgi|Chlre3|178253|fgenesh2_pg.C_scaffold_50000059
5' UCGCAAAGGUCCGUUGGUUGA 3'
:||||||||:|| ||||||||
3' GGCGUUUCCGGGAAACCAACU 5'
Candidate 32TCAACCAAAGGGCCTTTGCGGTar pos: 15 35 Tar region: CDS
>jgi|Chlre3|178652|fgenesh2_pg.C_scaffold_51000105
5' CCGCAAAGGCCCGUUGGUUGA 3'
|||||||||||| ||||||||
3' GGCGUUUCCGGGAAACCAACU 5'
Candidate 35TCGAAGCGCACGCCGGTGACTTar pos: 1394 1412 Tar region: CDS
>jgi|Chlre3|115135|e_gwW.12.13.1
5' AG-CAGC-GCGUGCGCUUCGA 3'
|| || | |||||||||||||
3' UCAGUGGCCGCACGCGAAGCU 5'
Candidate 35TCGAAGCGCACGCCGGTGACTTar pos: 523 542 Tar region: CDS
>jgi|Chlre3|166292|fgenesh2_pg.C_scaffold_7000211
5' GGU-ACCGCCGUGCGCUUCGA 3'
:|| |||| ||||||||||||
3' UCAGUGGCCGCACGCGAAGCU 5'
Candidate 35TCGAAGCGCACGCCGGTGACTTar pos: 855 874 Tar region: CDS
>jgi|Chlre3|132166|estExt_gwp_1H.C_460017 {AMI1}
5' A-UCCCCGGCGUGCGCUUCGC 3'
| || |||||||||||||||
3' UCAGUGGCCGCACGCGAAGCU 5'
Candidate 40GGCCTGTTAGCTCAGTTGGTTar pos: 2353 2371 Tar region: CDS
>jgi|Chlre3|151877|Chlre2_kg.scaffold_41000069
5' ACCAA-UGAGCUAACCGGCC 3'
||||| ||||||||| ||||
3' UGGUUGACUCGAUUGUCCGG 5'
Candidate 46TGCAGCTGGATCAGATCTGGCTar pos: 230 250 Tar region: CDS
>jgi|Chlre3|191179|estExt_fgenesh2_pg.C_210175
5' GCCACG-UGUGAUCCAGCUGCA 3'
|||| | | |||||||||||||
3' CGGU-CUAGACUAGGUCGACGU 5'
Candidate 47TAGCTGCGGCGACGCTGTGGCTar pos: 106 124 Tar region: CDS
>jgi|Chlre3|116572|e_gwW.1.79.1
5' GCCGCAGC--CGCCGCAGCUA 3'
|||:|||| |||||||||||
3' CGGUGUCGCAGCGGCGUCGAU 5'
Candidate 47TAGCTGCGGCGACGCTGTGGCTar pos: 1515 1533 Tar region: CDS
>jgi|Chlre3|20645|fgenesh1_pg.C_scaffold_63000045 {FAP79}
5' GCC-CAGCG-CGCCGCAGCUG 3'
||| ||||| ||||||||||:
3' CGGUGUCGCAGCGGCGUCGAU 5'
Candidate 47TAGCTGCGGCGACGCTGTGGCTar pos: 2707 2728 Tar region: CDS
>jgi|Chlre3|194227|estExt_fgenesh2_pg.C_600052
5' GCCACUGGCGUCGCCGCAGCUG 3'
||||| :||||||||||||||:
3' CGGUG-UCGCAGCGGCGUCGAU 5'
Candidate 47TAGCTGCGGCGACGCTGTGGCTar pos: 526 545 Tar region: CDS
>jgi|Chlre3|188189|estExt_fgenesh2_pg.C_90128
5' GCCACAACG-CGCCGCAGCUG 3'
|||||| || ||||||||||:
3' CGGUGUCGCAGCGGCGUCGAU 5'
Candidate 47TAGCTGCGGCGACGCTGTGGCTar pos: 577 597 Tar region: CDS
>jgi|Chlre3|180576|fgenesh2_pg.C_scaffold_94000003
5' GCCACUGCGGCGCCGCAGCUG 3'
||||| ||| ||||||||||:
3' CGGUGUCGCAGCGGCGUCGAU 5'
Candidate 47TAGCTGCGGCGACGCTGTGGCTar pos: 6442 6460 Tar region: CDS
>jgi|Chlre3|143883|Chlre2_kg.scaffold_9000114
5' GCCACAGC--CGCCGCAGCUG 3'
|||||||| ||||||||||:
3' CGGUGUCGCAGCGGCGUCGAU 5'
Candidate 47TAGCTGCGGCGACGCTGTGGCTar pos: 838 856 Tar region: CDS
>jgi|Chlre3|190349|estExt_fgenesh2_pg.C_180160
5' GCCACAGC--CGCCGCAGCUG 3'
|||||||| ||||||||||:
3' CGGUGUCGCAGCGGCGUCGAU 5'
Candidate 47TAGCTGCGGCGACGCTGTGGCTar pos: 9328 9346 Tar region: CDS
>jgi|Chlre3|166572|fgenesh2_pg.C_scaffold_5000041
5' GCCACAGC--CGCCGCAGCUG 3'
|||||||| ||||||||||:
3' CGGUGUCGCAGCGGCGUCGAU 5'
Candidate 52TATGGTTACAATGGAAATCATTar pos: 266 284 Tar region: CDS
>jgi|Chlre3|166834|fgenesh2_pg.C_scaffold_5000303
5' AUGAUUU-CAUUGUAACC-UA 3'
||||||| |||||||||| ||
3' UACUAAAGGUAACAUUGGUAU 5'
Candidate 58TCGAACCATTGTCCCAGGACTTar pos: 3836 3856 Tar region: CDS
>jgi|Chlre3|173050|fgenesh2_pg.C_scaffold_17000130
5' AGUCCUGGGACAAUGGUUCCA 3'
||||||||||||||||||| |
3' UCAGGACCCUGUUACCAAGCU 5'
Candidate 59TCCGGTCAAAGCTATTGGCCCTar pos: 248 268 Tar region: CDS
>jgi|Chlre3|168001|fgenesh2_pg.C_scaffold_4000052
5' CGG-CAGAUAGCUUUGACCGGA 3'
|| || |||||||||||||||
3' CCCGGU-UAUCGAAACUGGCCU 5'
Candidate 59TCCGGTCAAAGCTATTGGCCCTar pos: 248 268 Tar region: CDS
>jgi|Chlre3|168002|fgenesh2_pg.C_scaffold_4000053
5' CGG-CAGAUAGCUUUGACCGGA 3'
|| || |||||||||||||||
3' CCCGGU-UAUCGAAACUGGCCU 5'
Candidate 60TTGATGAGAGTGGGCTGCCGGTar pos: 268 289 Tar region: CDS
>jgi|Chlre3|174986|fgenesh2_pg.C_scaffold_25000093
5' CCGGCGGUCCACUACUCAUCAA 3'
|||||:|:||||| ||||||||
3' GGCCGUCGGGUGA-GAGUAGUU 5'
Candidate 61ATTTGCGAGGTCGCGCGCGGATar pos: 439 459 Tar region: CDS
>jgi|Chlre3|119565|e_gwW.29.83.1
5' U-CGCGCGACGACCUCGCAAAC 3'
| |||||| ||||||||||||
3' AGGCGCGC-GCUGGAGCGUUUA 5'
Candidate 62TCCGCGCGCGACCTCGCATar pos: 1031 1046 Tar region: CDS
>jgi|Chlre3|186782|estExt_fgenesh2_pg.C_50135
5' UG-GAGGUCGCG-GCGGA 3'
|| ||||||||| |||||
3' ACGCUCCAGCGCGCGCCU 5'
Candidate 62TCCGCGCGCGACCTCGCATar pos: 1731 1748 Tar region: CDS
>jgi|Chlre3|173552|fgenesh2_pg.C_scaffold_22000076
5' GGCG-GUGUCGCGCGCGGA 3'
||| | ||||||||||||
3' ACGCUC-CAGCGCGCGCCU 5'
Candidate 62TCCGCGCGCGACCTCGCATar pos: 2769 2786 Tar region: CDS
>jgi|Chlre3|149939|Chlre2_kg.scaffold_27000208 {FBB6}
5' GGCGGA-GUCGCGCGCGGA 3'
|| || ||||||||||||
3' ACG-CUCCAGCGCGCGCCU 5'
Candidate 62TCCGCGCGCGACCTCGCATar pos: 3215 3230 Tar region: CDS
>jgi|Chlre3|192775|estExt_fgenesh2_pg.C_360109
5' UG-GA-GUCGCGCGCGGA 3'
|| || ||||||||||||
3' ACGCUCCAGCGCGCGCCU 5'
Candidate 62TCCGCGCGCGACCTCGCATar pos: 358 377 Tar region: CDS
>jgi|Chlre3|145636|Chlre2_kg.scaffold_14000269
5' CGCGAGCCGUCGCGCGCGGA 3'
||||| ||||||||||||
3' ACGCUC--CAGCGCGCGCCU 5'
Candidate 62TCCGCGCGCGACCTCGCATar pos: 460 476 Tar region: CDS
>jgi|Chlre3|188363|estExt_fgenesh2_pg.C_100090
5' UGCGA-GUCGCGCGGGGA 3'
||||| |||||||| |||
3' ACGCUCCAGCGCGCGCCU 5'
Candidate 62TCCGCGCGCGACCTCGCATar pos: 708 723 Tar region: CDS
>jgi|Chlre3|145759|Chlre2_kg.scaffold_15000073
5' UGCG-GGU-GCGCGCGGA 3'
|||| ||| |||||||||
3' ACGCUCCAGCGCGCGCCU 5'
Candidate 62TCCGCGCGCGACCTCGCATar pos: 770 786 Tar region: CDS
>jgi|Chlre3|122203|e_gwW.62.1.1
5' UGCGA-GCCGCGCGCGGA 3'
||||| | ||||||||||
3' ACGCUCCAGCGCGCGCCU 5'
Candidate 62TCCGCGCGCGACCTCGCATar pos: 989 1004 Tar region: CDS
>jgi|Chlre3|177573|fgenesh2_pg.C_scaffold_43000027 {RWP3} hypothetical protein
5' UG-GAGGUCGC-CGCGGA 3'
|| |||||||| ||||||
3' ACGCUCCAGCGCGCGCCU 5'
Candidate 66TCCACGCCGAGCGCCTCCGCGTar pos: 1410 1430 Tar region: CDS
>jgi|Chlre3|190680|estExt_fgenesh2_pg.C_170112 {SPL7}
5' CGCGAAGGCGCUUGGCGUGGA 3'
|||| |||||||:||||||||
3' GCGCCUCCGCGAGCCGCACCU 5'
Candidate 66TCCACGCCGAGCGCCTCCGCGTar pos: 210 230 Tar region: CDS
>jgi|Chlre3|179978|fgenesh2_pg.C_scaffold_79000028
5' CGCGGAGGCGCUUGGCGUGGA 3'
||||||||||||:||||||||
3' GCGCCUCCGCGAGCCGCACCU 5'
Candidate 66TCCACGCCGAGCGCCTCCGCGTar pos: 3440 3461 Tar region: UTR
>jgi|Chlre3|193124|estExt_fgenesh2_pg.C_390013
5' CAGCGGACGAGCUCGGCGUGGA 3'
| ||||| | ||||||||||||
3' G-CGCCUCCGCGAGCCGCACCU 5'
Candidate 66TCCACGCCGAGCGCCTCCGCGTar pos: 390 411 Tar region: CDS
>jgi|Chlre3|191486|estExt_fgenesh2_pg.C_280016 {SMT1}
5' CGCCGGAGGCGCUCGGCAUGGA 3'
|| |||||||||||||| ||||
3' GC-GCCUCCGCGAGCCGCACCU 5'
Candidate 66TCCACGCCGAGCGCCTCCGCGTar pos: 42 62 Tar region: CDS
>jgi|Chlre3|168658|fgenesh2_pg.C_scaffold_2000304
5' CGCGGAGGCGCUCGGCGUGGA 3'
|||||||||||||||||||||
3' GCGCCUCCGCGAGCCGCACCU 5'
Candidate 66TCCACGCCGAGCGCCTCCGCGTar pos: 42 62 Tar region: CDS
>jgi|Chlre3|190305|estExt_fgenesh2_pg.C_180087
5' CGCAGAGGCGCUCGGCGUGGA 3'
||| |||||||||||||||||
3' GCGCCUCCGCGAGCCGCACCU 5'
Candidate 67CGAGGCGCGCCGGCAGCGGGTar pos: 1232 1251 Tar region: CDS
>jgi|Chlre3|149708|Chlre2_kg.scaffold_25000187 {FAP44} Conserved Uncharacterized Flagellar Associated Protein
5' CGCCGCUGCCGGC-CGCCUCG 3'
| ||||||||||| |||||||
3' G-GGCGACGGCCGCGCGGAGC 5'
Candidate 67CGAGGCGCGCCGGCAGCGGGTar pos: 1236 1255 Tar region: CDS
>jgi|Chlre3|143710|Chlre2_kg.scaffold_2000438
5' CCCGCUGCCGGGCGCGCC-CG 3'
||||||||| |||||||| ||
3' GGGCGACGG-CCGCGCGGAGC 5'
Candidate 67CGAGGCGCGCCGGCAGCGGGTar pos: 1861 1878 Tar region: CDS
>jgi|Chlre3|142731|Chlre2_kg.scaffold_6000221
5' CCC-CUGCCGGCG-GCCUCG 3'
||| ||||||||| ||||||
3' GGGCGACGGCCGCGCGGAGC 5'
Candidate 67CGAGGCGCGCCGGCAGCGGGTar pos: 224 244 Tar region: CDS
>jgi|Chlre3|180767|fgenesh2_pg.C_scaffold_100000022
5' CCCGCGGCCUGGCGCGCCUCA 3'
||||| ||| ||||||||||
3' GGGCGACGG-CCGCGCGGAGC 5'
Candidate 67CGAGGCGCGCCGGCAGCGGGTar pos: 269 288 Tar region: CDS
>jgi|Chlre3|166306|fgenesh2_pg.C_scaffold_7000225
5' CCCGCUACCGGCGCUCCUCG 3'
|||||| ||||||| |||||
3' GGGCGACGGCCGCGCGGAGC 5'
Candidate 67CGAGGCGCGCCGGCAGCGGGTar pos: 2718 2737 Tar region: CDS
>jgi|Chlre3|194628|estExt_fgenesh2_pg.C_720046
5' CACCGCUGCCGGCGCG-CUCG 3'
| |||||||||||||| ||||
3' G-GGCGACGGCCGCGCGGAGC 5'
Candidate 67CGAGGCGCGCCGGCAGCGGGTar pos: 370 388 Tar region: CDS
>jgi|Chlre3|17930|fgenesh1_pg.C_scaffold_33000131 {FAP208} Found in the flagellar proteome (Pazour, Agrin, Leszyk, Witman; PMID: 15998802)
5' CCCGCCGCCGGCGCGCC-CG 3'
||||| ||||||||||| ||
3' GGGCGACGGCCGCGCGGAGC 5'
Candidate 67CGAGGCGCGCCGGCAGCGGGTar pos: 6240 6259 Tar region: CDS
>jgi|Chlre3|194630|estExt_fgenesh2_pg.C_720048
5' CACCGCUGCCGGCGCG-CUCG 3'
| |||||||||||||| ||||
3' G-GGCGACGGCCGCGCGGAGC 5'
Candidate 67CGAGGCGCGCCGGCAGCGGGTar pos: 7556 7576 Tar region: CDS
>jgi|Chlre3|169185|fgenesh2_pg.C_scaffold_9000324
5' CCUCGCUGGCGGCGCGCCUCA 3'
|| ||||| |||||||||||
3' GG-GCGACGGCCGCGCGGAGC 5'
Candidate 69TTCCGCTGCCTGCGCGCCTCGTar pos: 1114 1135 Tar region: UTR
>jgi|Chlre3|149388|Chlre2_kg.scaffold_26000123
5' CGCAUGCGCGCAGGCAGCGGAA 3'
|| | |||||||||||||||||
3' GC-UCCGCGCGUCCGUCGCCUU 5'
Candidate 69TTCCGCTGCCTGCGCGCCTCGTar pos: 113 132 Tar region: CDS
>jgi|Chlre3|149596|Chlre2_kg.scaffold_25000075
5' C-AGGCUCGCAGGCAGCGGAA 3'
| |||| ||||||||||||||
3' GCUCCGCGCGUCCGUCGCCUU 5'
Candidate 69TTCCGCTGCCTGCGCGCCTCGTar pos: 1304 1323 Tar region: CDS
>jgi|Chlre3|193380|estExt_fgenesh2_pg.C_420050
5' CGGGGCGC-CAGGCAGCGGAC 3'
||:||||| |||||||||||
3' GCUCCGCGCGUCCGUCGCCUU 5'
Candidate 69TTCCGCTGCCTGCGCGCCTCGTar pos: 1353 1371 Tar region: CDS
>jgi|Chlre3|142479|Chlre2_kg.scaffold_3000452 {MSH1}
5' UGAGG-GCG-AGGCAGCGGAA 3'
:|||| ||| |||||||||||
3' GCUCCGCGCGUCCGUCGCCUU 5'
Candidate 69TTCCGCTGCCTGCGCGCCTCGTar pos: 405 425 Tar region: CDS
>jgi|Chlre3|153346|Chlre2_kg.scaffold_60000035
5' CGACAGCG-GCAGGCAGCGGAA 3'
||| ||| |||||||||||||
3' GCU-CCGCGCGUCCGUCGCCUU 5'
Candidate 69TTCCGCTGCCTGCGCGCCTCGTar pos: 639 660 Tar region: CDS
>jgi|Chlre3|193607|estExt_fgenesh2_pg.C_470098
5' GGAGGCGCGCAGGCAGCGGGAA 3'
|||||||||||||||| ||||
3' GCUCCGCGCGUCCGUCG-CCUU 5'
Candidate 69TTCCGCTGCCTGCGCGCCTCGTar pos: 9519 9538 Tar region: CDS
>jgi|Chlre3|141539|Chlre2_kg.scaffold_7000366
5' CGAGGCG-GAAGGCAGCGGAG 3'
||||||| | ||||||||||:
3' GCUCCGCGCGUCCGUCGCCUU 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 1013 1033 Tar region: CDS
>jgi|Chlre3|177524|fgenesh2_pg.C_scaffold_42000107
5' CGCAGCAACAGCAGCAG-CAAC 3'
||||||| ||||||||| ||||
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 1021 1041 Tar region: CDS
>jgi|Chlre3|181842|estExt_fgenesh2_kg.C_80003
5' UGCAGCAGCAGCAGCAG-CAAC 3'
:|||||||||||||||| ||||
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 1026 1046 Tar region: CDS
>jgi|Chlre3|151316|Chlre2_kg.scaffold_38000054
5' AGCAGCAGCAGCAGCAGCC-AC 3'
|||||||||||||||||| ||
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 1026 1047 Tar region: CDS
>jgi|Chlre3|154762|Chlre2_kg.scaffold_90000006
5' UGCAGCAGCAGCAGCAGCCAGC 3'
:|||||||||||||||||||:|
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 10738 10761 Tar region: UTR
>jgi|Chlre3|192696|estExt_fgenesh2_pg.C_310224 {FAP261} Flagellar Associated Protein
5' CAGCAGCAGCAGCAGCAGCCAUAC 3'
| ||||||||||||||||||| ||
3' G-CGUCGUCGUCGUCGUCGGU-UG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 1113 1134 Tar region: CDS
>jgi|Chlre3|93505|fgenesh1_est.C_scaffold_5000041 squamosa promoter binding-like protein
5' C-CAGCAGCAGCAGCAGCCCAAC 3'
| ||||||||||||||| |||||
3' GCGUCGUCGUCGUCGUC-GGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 114 135 Tar region: CDS
>jgi|Chlre3|195355|estExt_fgenesh2_pg.C_18780001
5' AGCAGCAGCAGCAACAGCCAAC 3'
|||||||||||| ||||||||
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 1172 1192 Tar region: CDS
>jgi|Chlre3|154141|Chlre2_kg.scaffold_74000023
5' CGCCGCAGCAGCAGCAG-CAAC 3'
||| ||||||||||||| ||||
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 1183 1204 Tar region: CDS
>jgi|Chlre3|148734|Chlre2_kg.scaffold_24000133
5' CAGCAGCAGCAGCAGCAGCC-AC 3'
| |||||||||||||||||| ||
3' G-CGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 1184 1205 Tar region: CDS
>jgi|Chlre3|175359|fgenesh2_pg.C_scaffold_30000037
5' CGCAGCAGCAGCAGCAGCCGGA 3'
|||||||||||||||||||::
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 120 140 Tar region: CDS
>jgi|Chlre3|151979|Chlre2_kg.scaffold_42000059
5' CGCGGCAGCAGCAGCAG-CAAC 3'
|||:||||||||||||| ||||
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 1220 1241 Tar region: CDS
>jgi|Chlre3|147983|Chlre2_kg.scaffold_20000125
5' CGCAGCAGCAGCAGCAGCCGAC 3'
|||||||||||||||||||:||
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 1226 1246 Tar region: CDS
>jgi|Chlre3|152480|Chlre2_kg.scaffold_46000013
5' CGCAGCAGCAGCAGCAG-CAAC 3'
||||||||||||||||| ||||
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 1282 1304 Tar region: CDS
>jgi|Chlre3|149049|Chlre2_kg.scaffold_23000199
5' CAGCAGCAGCAGCAGCAGCCAGG 3'
| |||||||||||||||||||:
3' G-CGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 129 151 Tar region: CDS
>jgi|Chlre3|144848|Chlre2_kg.scaffold_12000042
5' CAGCAGCAGCAGCAGCAGCCAGG 3'
| |||||||||||||||||||:
3' G-CGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 1337 1357 Tar region: CDS
>jgi|Chlre3|152791|Chlre2_kg.scaffold_49000031
5' CGCAGCAGCAGCAGCAG-CAGC 3'
||||||||||||||||| ||:|
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 1345 1366 Tar region: CDS
>jgi|Chlre3|196107|OVA_fgenesh1_kg.C_scaffold_3000167 {SPP1C} signal peptide peptidase
5' CAGCAGCAGCAGCAGCAG-CAAC 3'
| |||||||||||||||| ||||
3' G-CGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 1385 1406 Tar region: CDS
: >jgi|Chlre3|172858|fgenesh2_pg.C_scaffold_19000257
5' CGCAGCAGCAGCAGCAGCCGGC 3'
|||||||||||||||||||::
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 1402 1423 Tar region: CDS
>jgi|Chlre3|148230|Chlre2_kg.scaffold_22000068
5' CAGCAGCAGCAGCAGCAG-CAAC 3'
| |||||||||||||||| ||||
3' G-CGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 1448 1468 Tar region: CDS
>jgi|Chlre3|150353|Chlre2_kg.scaffold_34000069
5' UGCAGCAGCAGCAGCAG-CAAC 3'
:|||||||||||||||| ||||
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 1468 1490 Tar region: CDS
>jgi|Chlre3|145565|Chlre2_kg.scaffold_14000198
5' CGGCAGCAGCAGCAGCAGCCCAC 3'
| |||||||||||||||||| ||
3' G-CGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 1491 1512 Tar region: CDS
>jgi|Chlre3|152181|Chlre2_kg.scaffold_44000044 {PDE20} 3',5'-cyclic-nucleotide phosphodiesterase
5' CGCAGCAGCAGCAGCAGCCGGC 3'
|||||||||||||||||||::
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 1499 1519 Tar region: CDS
>jgi|Chlre3|151172|Chlre2_kg.scaffold_33000040
5' CGCAGCAGCAGCAGCAG-CAAC 3'
||||||||||||||||| ||||
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 1521 1542 Tar region: CDS
>jgi|Chlre3|142415|Chlre2_kg.scaffold_3000388 {SAD1 } minus agglutinin protein
5' CGGCAGCAGCAGCAGCAG-CAAC 3'
| |||||||||||||||| ||||
3' G-CGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 157 177 Tar region: CDS
>jgi|Chlre3|192443|estExt_fgenesh2_pg.C_320064
5' CGCAGCAGCAGCAGCAG-CAGC 3'
||||||||||||||||| ||:|
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 1583 1604 Tar region: CDS
>jgi|Chlre3|153808|Chlre2_kg.scaffold_65000022
5' CAGCAGCAGCAGCAGCAG-CAAC 3'
| |||||||||||||||| ||||
3' G-CGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 1678 1697 Tar region: CDS
>jgi|Chlre3|191113|estExt_fgenesh2_pg.C_210070
5' CGC-GCAGCAGCAGCAG-CAAC 3'
||| ||||||||||||| ||||
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 1706 1728 Tar region: CDS
: >jgi|Chlre3|140843|Chlre2_kg.scaffold_8000014
5' CAGCAGCAGCAGCAGCAGCCAGU 3'
| |||||||||||||||||||::
3' G-CGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 1723 1746 Tar region: CDS
>jgi|Chlre3|36125|estExt_fgenesh1_pg.C_470052 {DNJ31} DnaJ-like protein 31, perhaps chloroplastic
5' CAGCAGCAGCAGCAGCAGCCACAC 3'
| ||||||||||||||||||| ||
3' G-CGUCGUCGUCGUCGUCGGU-UG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 1834 1855 Tar region: CDS
>jgi|Chlre3|142737|Chlre2_kg.scaffold_6000227
5' CAGCAGCAGCAGCAGCAG-CAAC 3'
| |||||||||||||||| ||||
3' G-CGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 2056 2077 Tar region: CDS
>jgi|Chlre3|150344|Chlre2_kg.scaffold_34000060
5' CGCCAGCAGCAGCAGCAG-CAAC 3'
|| ||||||||||||||| ||||
3' GC-GUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 208 231 Tar region: CDS
>jgi|Chlre3|168290|fgenesh2_pg.C_scaffold_4000341
5' CAGCAGCAGCAGCAGCAGCCCAAC 3'
| |||||||||||||||| |||||
3' G-CGUCGUCGUCGUCGUC-GGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 2159 2179 Tar region: CDS
>jgi|Chlre3|152339|Chlre2_kg.scaffold_45000001
5' CGCUGCAGCAGCAGCAG-CAAC 3'
||| ||||||||||||| ||||
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 227 248 Tar region: CDS
>jgi|Chlre3|128577|estExt_gwp_1H.C_140124
5' C-CAGCAGGCAGCAGCAGCCAAC 3'
| ||||| |||||||||||||||
3' GCGUCGU-CGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 2308 2329 Tar region: CDS
>jgi|Chlre3|150209|Chlre2_kg.scaffold_29000097
5' CAGCAGCAGCAGCAGCAGCC-AC 3'
| |||||||||||||||||| ||
3' G-CGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 239 261 Tar region: CDS
>jgi|Chlre3|142387|Chlre2_kg.scaffold_3000360
5' CAGCAGCAGCAGCAGCAGCCCAC 3'
| |||||||||||||||||| ||
3' G-CGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 2394 2416 Tar region: CDS
>jgi|Chlre3|20689|fgenesh1_pg.C_scaffold_61000037 {CLR12} Coxiella-Like Repeat protein
5' CAGCAGCAGCAGCAGCAGCCAGG 3'
| |||||||||||||||||||:
3' G-CGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 2520 2539 Tar region: CDS
>jgi|Chlre3|31640|estExt_fgenesh1_pg.C_130183 {BUG11} basal body protein of unknown function
5' C-CAGCAGCAGCAGCAG-CAAC 3'
| ||||||||||||||| ||||
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 2534 2555 Tar region: CDS
>jgi|Chlre3|173799|fgenesh2_pg.C_scaffold_21000094
5' CGCAGCAGCAGCAGCAGCCGGA 3'
|||||||||||||||||||::
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 2553 2573 Tar region: CDS
>jgi|Chlre3|193870|estExt_fgenesh2_pg.C_490028
5' CGCAGCAGCAGCAGCAG-CGAC 3'
||||||||||||||||| |:||
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 2796 2817 Tar region: CDS
>jgi|Chlre3|147214|Chlre2_kg.scaffold_18000139
5' AACAGCAGCAGCAGCAGCCAAC 3'
||||||||||||||||||||
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 295 315 Tar region: CDS
>jgi|Chlre3|127786|estExt_gwp_1H.C_90230 {PDC1} pyruvate decarboxylase
5' CGCAGCAGCAGCAGCAG-CAGC 3'
||||||||||||||||| ||:|
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 295 315 Tar region: CDS
>jgi|Chlre3|135197|estExt_gwp_1W.C_90216 {PDC2} pyruvate decarboxylase
5' CGCAGCAGCAGCAGCAG-CAGC 3'
||||||||||||||||| ||:|
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 2959 2980 Tar region: UTR
>jgi|Chlre3|142043|Chlre2_kg.scaffold_3000016
5' CAGCAGCAGCAGCAGCAG-CAAC 3'
| |||||||||||||||| ||||
3' G-CGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 2963 2983 Tar region: UTR
>jgi|Chlre3|170120|fgenesh2_pg.C_scaffold_12000179
5' CGCAGCAGCAGCAGCAG-CAAG 3'
||||||||||||||||| |||
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 297 317 Tar region: CDS
>jgi|Chlre3|188913|estExt_fgenesh2_pg.C_120199
5' CGCAGCAGCAGCAGCAG-CAAG 3'
||||||||||||||||| |||
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 3011 3031 Tar region: CDS
>jgi|Chlre3|190219|estExt_fgenesh2_pg.C_10886
5' CGCAGCAGCAGCAGCAG-CAAU 3'
||||||||||||||||| |||:
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 307 329 Tar region: CDS
>jgi|Chlre3|194724|estExt_fgenesh2_pg.C_740017
5' CGCAGCAGCAGCAGCAGGCCGAC 3'
|||||||||||||||| |||:||
3' GCGUCGUCGUCGUCGU-CGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 3118 3139 Tar region: CDS
>jgi|Chlre3|195807|FER_170636 {NIT2} transcription factor regulating nitrogen metabolism
5' CUGCAGCAGCAGCAGCAG-CAAC 3'
| |||||||||||||||| ||||
3' G-CGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 314 335 Tar region: CDS
>jgi|Chlre3|188803|estExt_fgenesh2_pg.C_120023
5' CGCAGCAACAGCAGCAGCCAAG 3'
||||||| |||||||||||||
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 3517 3537 Tar region: CDS
>jgi|Chlre3|176049|fgenesh2_pg.C_scaffold_32000180
5' CGCAGCAGCAGCGGC-GCCAAC 3'
||||||||||||:|| ||||||
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 3823 3844 Tar region: CDS
>jgi|Chlre3|149155|Chlre2_kg.scaffold_28000103
5' CAGCAGCAGCAGCAGCAGCC-AC 3'
| |||||||||||||||||| ||
3' G-CGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 383 403 Tar region: CDS
>jgi|Chlre3|183164|estExt_fgenesh2_kg.C_120066
5' GGCAGCAGCAGCAGCAG-CAAC 3'
|||||||||||||||| ||||
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 3877 3899 Tar region: CDS
>jgi|Chlre3|154334|Chlre2_kg.scaffold_82000034
5' CAGCAGCAGCAGCAGCAGCCAAU 3'
| ||||||||||||||||||||:
3' G-CGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 391 411 Tar region: CDS
>jgi|Chlre3|186266|estExt_fgenesh2_pg.C_80137
5' CGCAGCAGCUGCAGCAG-CAAC 3'
||||||||| ||||||| ||||
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 3988 4010 Tar region: CDS
>jgi|Chlre3|172781|fgenesh2_pg.C_scaffold_19000180
5' CAGCAGCAGCAGCAGCAGCCCAC 3'
| |||||||||||||||||| ||
3' G-CGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 415 435 Tar region: CDS
>jgi|Chlre3|194988|estExt_fgenesh2_pg.C_840011
5' CGCAGCAGCGGCAGCAGCC-AC 3'
|||||||||:||||||||| ||
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 419 439 Tar region: CDS
>jgi|Chlre3|171477|fgenesh2_pg.C_scaffold_1000098
5' CGCAGCAGCAGCAGCAG-CAAG 3'
||||||||||||||||| |||
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 440 459 Tar region: CDS
>jgi|Chlre3|184402|estExt_fgenesh2_kg.C_280040
5' C-CAGCAGCAGCAGCAG-CAAC 3'
| ||||||||||||||| ||||
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 459 479 Tar region: CDS
>jgi|Chlre3|152493|Chlre2_kg.scaffold_46000026
5' CGCAGCGGCAGCAGCAGCC-AC 3'
||||||:|||||||||||| ||
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 460 480 Tar region: CDS
>jgi|Chlre3|183000|estExt_fgenesh2_kg.C_110015
5' CGCAGCAACAGCAGCAG-CAAC 3'
||||||| ||||||||| ||||
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 5360 5381 Tar region: CDS
>jgi|Chlre3|186889|estExt_fgenesh2_pg.C_50300
5' CGCAGCAGCAGCAGCAUCCAAC 3'
|||||||||||||||| |||||
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 544 564 Tar region: CDS
>jgi|Chlre3|142008|Chlre2_kg.scaffold_5000418
5' GGCAGCAGCAGCAGCAG-CAAC 3'
|||||||||||||||| ||||
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 573 593 Tar region: CDS
>jgi|Chlre3|138013|estExt_gwp_1W.C_260092
5' CGCAGCAGCAGCAGCAG-CAAA 3'
||||||||||||||||| |||
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 578 598 Tar region: CDS
>jgi|Chlre3|194668|estExt_fgenesh2_pg.C_780044
5' CGCAACAGCAGCAGCAGCC-AC 3'
|||| |||||||||||||| ||
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 578 599 Tar region: CDS
>jgi|Chlre3|152403|Chlre2_kg.scaffold_45000065
5' CGACAGCAGCAGCAGCAG-CAAC 3'
|| ||||||||||||||| ||||
3' GC-GUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 6212 6233 Tar region: UTR
>jgi|Chlre3|177465|fgenesh2_pg.C_scaffold_42000048
5' AGCAGCAGCAGCAGCAGCCGAC 3'
||||||||||||||||||:||
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 653 673 Tar region: UTR
>jgi|Chlre3|187890|estExt_fgenesh2_pg.C_20111
5' CGCAGCAGCAGCAGCAG-CAGC 3'
||||||||||||||||| ||:|
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 655 677 Tar region: CDS
>jgi|Chlre3|145168|Chlre2_kg.scaffold_13000081
5' CAGCAGCAGCAGCAGCAGCCAAU 3'
| ||||||||||||||||||||:
3' G-CGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 680 700 Tar region: CDS
>jgi|Chlre3|151870|Chlre2_kg.scaffold_41000062
5' CGCAGCAGGAGCAGCAG-CAAC 3'
|||||||| |||||||| ||||
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 70 91 Tar region: CDS
>jgi|Chlre3|174194|fgenesh2_pg.C_scaffold_24000269
5' AGCAGCAGCAGCAACAGCCAAC 3'
|||||||||||| ||||||||
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 7241 7262 Tar region: CDS
>jgi|Chlre3|9658|fgenesh1_pg.C_scaffold_9000192 {POC4} centriole proteome protein
5' CGCAGCAGCAGCAGCAGCCGGC 3'
|||||||||||||||||||::
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 866 886 Tar region: CDS
>jgi|Chlre3|152358|Chlre2_kg.scaffold_45000020
5' CGCAGCAGCAGCAGCAG-CAGC 3'
||||||||||||||||| ||:|
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 883 904 Tar region: CDS
>jgi|Chlre3|151255|Chlre2_kg.scaffold_33000123
5' CAGCAGCAGCAGCAGCAG-CAAC 3'
| |||||||||||||||| ||||
3' G-CGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 903 923 Tar region: UTR
>jgi|Chlre3|191815|estExt_fgenesh2_pg.C_250041
5' CGCAGCAGCAGCAGCAG-UAAC 3'
||||||||||||||||| :|||
3' GCGUCGUCGUCGUCGUCGGUUG 5'
Candidate 70GTTGGCTGCTGCTGCTGCTGCGTar pos: 942 963 Tar region: CDS
>jgi|Chlre3|154421|Chlre2_kg.scaffold_81000015
5' CGCCAGCAGCAGCAGCAG-CAAC 3'
|| ||||||||||||||| ||||
3' GC-GUCGUCGUCGUCGUCGGUUG 5'
Candidate 72TCCGAAAAGCCCTATGTTTGCTTar pos: 66 86 Tar region: CDS
>jgi|Chlre3|192045|estExt_fgenesh2_pg.C_270210 {HAM3401} Histone acetyltransferase
5' A-CAAACAUAGGGCUUUUCGGA 3'
| ||||||||||||||||||||
3' UCGUUUGUAUCCCGAAAAGCCU 5'
Candidate 78CCTGGGCCTCACGGCGGCGGTar pos: 1159 1176 Tar region: CDS
>jgi|Chlre3|185190|estExt_fgenesh2_kg.C_400018 {THI4} thiazole biosynthetic enzyme
5' CCGCCGCC--GAGGCCCAGG 3'
|||||||| ||||||||||
3' GGCGGCGGCACUCCGGGUCC 5'
Candidate 78CCTGGGCCTCACGGCGGCGGTar pos: 1249 1266 Tar region: CDS
>jgi|Chlre3|196349|MTC_MTC_estExt_fgenesh2_kg.C_400018 {THI4} thiazole biosynthetic enzyme regulatory fragment
5' CCGCCGCC--GAGGCCCAGG 3'
|||||||| ||||||||||
3' GGCGGCGGCACUCCGGGUCC 5'
Candidate 78CCTGGGCCTCACGGCGGCGGTar pos: 554 573 Tar region: CDS
>jgi|Chlre3|151390|Chlre2_kg.scaffold_38000128
5' CCGCCGCCGCUGAGGCCC-GG 3'
||||||||| |||||||| ||
3' GGCGGCGGC-ACUCCGGGUCC 5'
Candidate 80TGGAAAATCGAGGCCGCTGGCTar pos: 93 113 Tar region: CDS
>jgi|Chlre3|178132|fgenesh2_pg.C_scaffold_48000036
5' GCCAGCGGCCUCGAUUUUCCA 3'
|||||||||||||||||||||
3' CGGUCGCCGGAGCUAAAAGGU 5'
Candidate 82TTCGAAAAGTTGCACAGCGCCTar pos: 113 133 Tar region: CDS
>jgi|Chlre3|193979|estExt_fgenesh2_pg.C_540074
5' GGCGCUGUGCAGCUUUUCGAA 3'
|||||||||||:|||||||||
3' CCGCGACACGUUGAAAAGCUU 5'
Candidate 82TTCGAAAAGTTGCACAGCGCCTar pos: 113 133 Tar region: CDS
>jgi|Chlre3|196819|OVA_estExt_GenewiseH_1.C_540109 {SOT2-pseudo} putative di or tri-carboxylate translocator
5' GGCGCUGUGCAGCUUUUCGAA 3'
|||||||||||:|||||||||
3' CCGCGACACGUUGAAAAGCUU 5'
Candidate 83ACAAGGGGAGGGGGGCAGGGTar pos: 275 292 Tar region: CDS
>jgi|Chlre3|97227|e_gwH.5.289.1
5' CCCU--CCCCCUCCCCUUGC 3'
|||| |||||||||||||
3' GGGACGGGGGGAGGGGAACA 5'
Candidate 90CCCGTCATACCCCGCTTGGTGTar pos: 94 114 Tar region: CDS
>jgi|Chlre3|169484|fgenesh2_pg.C_scaffold_10000286
5' CACCAAGCGGGGUAUGACGGG 3'
|||||||||||||||||||||
3' GUGGUUCGCCCCAUACUGCCC 5'
Candidate 93TGGCTGCGAGGACCCGACAGCTar pos: 2261 2279 Tar region: CDS
>jgi|Chlre3|189765|estExt_fgenesh2_pg.C_10166
5' GCUGUCGG--CCUCGCAGCCC 3'
|||||||| ||||||||||
3' CGACAGCCCAGGAGCGUCGGU 5'
Candidate 99TGTTTCACTGCAGTGCTGGTGTar pos: 1251 1270 Tar region: CDS
>jgi|Chlre3|177502|fgenesh2_pg.C_scaffold_42000085
5' CACUGGCACUGCAG-GAAACA 3'
|||::||||||||| ||||||
3' GUGGUCGUGACGUCACUUUGU 5'
Candidate 99TGTTTCACTGCAGTGCTGGTGTar pos: 375 394 Tar region: CDS
>jgi|Chlre3|149911|Chlre2_kg.scaffold_27000180
5' CACCAGUA-UGCAGUGAAGCA 3'
||||||:| |||||||||:||
3' GUGGUCGUGACGUCACUUUGU 5'
Candidate 105TCGTCGGTGAGGCTGGTGGTTar pos: 1558 1577 Tar region: CDS
>jgi|Chlre3|152767|Chlre2_kg.scaffold_49000007
5' ACCAACAGCCUCAUCGACGC 3'
|||| ||||||||:|||||
3' UGGUGGUCGGAGUGGCUGCU 5'
Candidate 105TCGTCGGTGAGGCTGGTGGTTar pos: 1858 1877 Tar region: CDS
>jgi|Chlre3|152765|Chlre2_kg.scaffold_49000005
5' ACCAACAGCCUCAUCGACGC 3'
|||| ||||||||:|||||
3' UGGUGGUCGGAGUGGCUGCU 5'
Candidate 113ACGAGGTAGCGGTGCCAGCGGTar pos: 155 175 Tar region: CDS
>jgi|Chlre3|176011|fgenesh2_pg.C_scaffold_32000142
5' CCGCCGCCACCGCUACCUCGU 3'
|||| | ||||||||||||||
3' GGCGACCGUGGCGAUGGAGCA 5'
Candidate 113ACGAGGTAGCGGTGCCAGCGGTar pos: 508 529 Tar region: CDS
>jgi|Chlre3|179812|fgenesh2_pg.C_scaffold_74000005
5' CCGCUGGACACCGCUGCCUCGC 3'
||||||| |||||||:|||||
3' GGCGACC-GUGGCGAUGGAGCA 5'
Candidate 113ACGAGGTAGCGGTGCCAGCGGTar pos: 564 583 Tar region: CDS
>jgi|Chlre3|166215|fgenesh2_pg.C_scaffold_7000134
5' CCGCUGGC-CCGCUACUUCGG 3'
|||||||| |||||||:|||
3' GGCGACCGUGGCGAUGGAGCA 5'
Candidate 114CAGTGCTGGGGGTGTCGGCGGTar pos: 743 763 Tar region: CDS
>jgi|Chlre3|93284|fgenesh1_est.C_scaffold_8000004
5' CCGCCGCCGA-CCCCAGCACUG 3'
|||||| | | |||||||||||
3' GGCGGCUG-UGGGGGUCGUGAC 5'
Candidate 115CAGGTGGCGGTGGCGGGGCGTar pos: 1139 1159 Tar region: CDS
>jgi|Chlre3|193995|estExt_fgenesh2_pg.C_540101
5' CGCCUCCGCCACCGCCACCUG 3'
|||| ||||||||||||||||
3' GCGG-GGCGGUGGCGGUGGAC 5'
Candidate 115CAGGTGGCGGTGGCGGGGCGTar pos: 1153 1174 Tar region: CDS
>jgi|Chlre3|187187|estExt_fgenesh2_pg.C_30328
5' CGGCGCCCGCCACCGCCACCUC 3'
| || ||||||||||||||||
3' G-CG-GGGCGGUGGCGGUGGAC 5'
Candidate 115CAGGTGGCGGTGGCGGGGCGTar pos: 1205 1224 Tar region: CDS
>jgi|Chlre3|186846|estExt_fgenesh2_pg.C_50234 {LACT} Lecithin:cholesterol acyltransferase
5' CGCCGCCGCCACCGCCACC-G 3'
|||| |||||||||||||| |
3' GCGG-GGCGGUGGCGGUGGAC 5'
Candidate 115CAGGTGGCGGTGGCGGGGCGTar pos: 1290 1310 Tar region: CDS
>jgi|Chlre3|122887|e_gwW.76.2.1
5' CGCCCCCCUCACCGCCACCUA 3'
|||||| | |||||||||||
3' GCGGGGCG-GUGGCGGUGGAC 5'
Candidate 115CAGGTGGCGGTGGCGGGGCGTar pos: 1326 1346 Tar region: CDS
>jgi|Chlre3|140842|Chlre2_kg.scaffold_8000013 {FAP148} Flagellar Associated Protein With Cation Channel Domain
5' CGCCGCCGCCGCCGCCACCUG 3'
|||| |||||:||||||||||
3' GCGG-GGCGGUGGCGGUGGAC 5'
Candidate 115CAGGTGGCGGTGGCGGGGCGTar pos: 1419 1440 Tar region: CDS
>jgi|Chlre3|168404|fgenesh2_pg.C_scaffold_2000050
5' CAGCGCCGCGCACCGCCACCUG 3'
| || |||| ||||||||||||
3' G-CGGGGCG-GUGGCGGUGGAC 5'
Candidate 115CAGGTGGCGGTGGCGGGGCGTar pos: 1495 1515 Tar region: CDS
>jgi|Chlre3|188141|estExt_fgenesh2_pg.C_90041
5' CGCCCCCGCCACCGCCACCCG 3'
|| |||||||||||||||| |
3' GC-GGGGCGGUGGCGGUGGAC 5'
Candidate 115CAGGTGGCGGTGGCGGGGCGTar pos: 1500 1519 Tar region: CDS
>jgi|Chlre3|172033|fgenesh2_pg.C_scaffold_1000654
5' CGCCUCCGCCACCGCCA-CUG 3'
|||| |||||||||||| |||
3' GCGG-GGCGGUGGCGGUGGAC 5'
Candidate 115CAGGTGGCGGTGGCGGGGCGTar pos: 169 190 Tar region: CDS
>jgi|Chlre3|159934|acegs_kg.scaffold_66000017
5' CGCCGCCGCCACCGCCAGCCUG 3'
|||| |||||||||||| ||||
3' GCGG-GGCGGUGGCGGU-GGAC 5'
Candidate 115CAGGTGGCGGTGGCGGGGCGTar pos: 174 195 Tar region: CDS
>jgi|Chlre3|146152|Chlre2_kg.scaffold_16000243 {ZRT1} zinc-nutrition responsive transporter
5' CGACCACCGCCGCCGCCACCUG 3'
|| || |||||:||||||||||
3' GC-GG-GGCGGUGGCGGUGGAC 5'
Candidate 115CAGGTGGCGGTGGCGGGGCGTar pos: 1905 1924 Tar region: CDS
>jgi|Chlre3|147208|Chlre2_kg.scaffold_18000133
5' CGCCGCCGCCACCGCCA-CUG 3'
|||| |||||||||||| |||
3' GCGG-GGCGGUGGCGGUGGAC 5'
Candidate 115CAGGTGGCGGTGGCGGGGCGTar pos: 2381 2401 Tar region: CDS
>jgi|Chlre3|189093|estExt_fgenesh2_pg.C_130179
5' CGCCGCCGCCACAGCCACCUG 3'
|||| ||||||| ||||||||
3' GCGG-GGCGGUGGCGGUGGAC 5'
Candidate 115CAGGTGGCGGTGGCGGGGCGTar pos: 259 279 Tar region: CDS
>jgi|Chlre3|121991|e_gwW.53.8.1
5' GGCCCCGCCACCGCCACGCUG 3'
|||||||||||||||| |||
3' GCGGGGCGGUGGCGGUG-GAC 5'
Candidate 115CAGGTGGCGGTGGCGGGGCGTar pos: 2610 2631 Tar region: CDS
>jgi|Chlre3|152561|Chlre2_kg.scaffold_46000094
5' CAGCCCCGCGCGCCGCCACCUG 3'
| ||||||| |:||||||||||
3' G-CGGGGCG-GUGGCGGUGGAC 5'
Candidate 115CAGGTGGCGGTGGCGGGGCGTar pos: 3453 3472 Tar region: CDS
>jgi|Chlre3|15852|fgenesh1_pg.C_scaffold_26000187 Putative DNA (cytosine-C5) methyltransferase
5' CGCCACCGCCACCGCCACC-G 3'
|||| |||||||||||||| |
3' GCGG-GGCGGUGGCGGUGGAC 5'
Candidate 115CAGGTGGCGGTGGCGGGGCGTar pos: 358 378 Tar region: CDS
>jgi|Chlre3|106059|e_gwH.39.39.1 Hypothetical zinc-dependent DNA-binding protein
5' CGCACCUGCCACCGCCACCUG 3'
||| ||:||||||||||||||
3' GCG-GGGCGGUGGCGGUGGAC 5'
Candidate 115CAGGTGGCGGTGGCGGGGCGTar pos: 387 405 Tar region: CDS
>jgi|Chlre3|95895|fgenesh1_est.C_scaffold_44000015
5' UGCCCCGCCACCG-CACCUG 3'
:|||||||||||| ||||||
3' GCGGGGCGGUGGCGGUGGAC 5'
Candidate 115CAGGTGGCGGTGGCGGGGCGTar pos: 416 435 Tar region: CDS
>jgi|Chlre3|193379|estExt_fgenesh2_pg.C_420049
5' CGCCACCGCCACCGCCACC-G 3'
|||| |||||||||||||| |
3' GCGG-GGCGGUGGCGGUGGAC 5'
Candidate 115CAGGTGGCGGTGGCGGGGCGTar pos: 563 582 Tar region: CDS
>jgi|Chlre3|128906|estExt_gwp_1H.C_160177 {SULP,SULP1} membrane component of ATP-dependent sulfate-transport system of chloroplast enveloppe
5' CGCCGCCGCCACCGCCACC-G 3'
|||| |||||||||||||| |
3' GCGG-GGCGGUGGCGGUGGAC 5'
Candidate 115CAGGTGGCGGTGGCGGGGCGTar pos: 584 603 Tar region: CDS
>jgi|Chlre3|141215|Chlre2_kg.scaffold_7000042
5' CGCCGCCGCCACCGCCACC-G 3'
|||| |||||||||||||| |
3' GCGG-GGCGGUGGCGGUGGAC 5'
Candidate 115CAGGTGGCGGTGGCGGGGCGTar pos: 620 640 Tar region: CDS
>jgi|Chlre3|195121|estExt_fgenesh2_pg.C_930014
5' CGCCACCGCCACCGCCACCUC 3'
|||| |||||||||||||||
3' GCGG-GGCGGUGGCGGUGGAC 5'
Candidate 115CAGGTGGCGGTGGCGGGGCGTar pos: 645 665 Tar region: CDS
>jgi|Chlre3|72868|gwW.1.690.1 {TPK} Thiamine pyrophosphokinase
5' CGGCCCCGCCACCGCCACCUC 3'
| ||||||||||||||||||
3' G-CGGGGCGGUGGCGGUGGAC 5'
Candidate 115CAGGTGGCGGTGGCGGGGCGTar pos: 732 753 Tar region: CDS
>jgi|Chlre3|190424|estExt_fgenesh2_pg.C_190012
5' CGCCACCGCCACCGCCACCUCG 3'
|||| ||||||||||||||| |
3' GCGG-GGCGGUGGCGGUGGA-C 5'
Candidate 115CAGGTGGCGGTGGCGGGGCGTar pos: 93 112 Tar region: CDS
>jgi|Chlre3|149908|Chlre2_kg.scaffold_27000177
5' CGCCACCGCCACCGCCACC-G 3'
|||| |||||||||||||| |
3' GCGG-GGCGGUGGCGGUGGAC 5'
Candidate 115CAGGTGGCGGTGGCGGGGCGTar pos: 950 969 Tar region: CDS
>jgi|Chlre3|143307|Chlre2_kg.scaffold_2000035
5' CG-CCCGCCACCGCCGACCUG 3'
|| |||||||||||| |||||
3' GCGGGGCGGUGGCGG-UGGAC 5'
Candidate 116TCCGCCGACACCCCCAGCACTTar pos: 110 131 Tar region: CDS
>jgi|Chlre3|119732|e_gwW.32.27.1
5' AGGUGCUGGCGGUGUCGGCGGC 3'
| ||||||| |||||||||||
3' U-CACGACCCCCACAGCCGCCU 5'
Candidate 116TCCGCCGACACCCCCAGCACTTar pos: 205 225 Tar region: CDS
>jgi|Chlre3|195356|estExt_fgenesh2_pg.C_25080001
5' GGUGCUGGAGGUGUUGGCGGA 3'
:||||||| |||||:||||||
3' UCACGACCCCCACAGCCGCCU 5'
Candidate 116TCCGCCGACACCCCCAGCACTTar pos: 2305 2323 Tar region: CDS
>jgi|Chlre3|189710|estExt_fgenesh2_pg.C_10091
5' AGU--UGGGGGUGUCGGCGGC 3'
||| |||||||||||||||
3' UCACGACCCCCACAGCCGCCU 5'
Candidate 116TCCGCCGACACCCCCAGCACTTar pos: 255 275 Tar region: CDS
>jgi|Chlre3|103419|e_gwH.21.179.1 Hypothetical translation initiation factor 2 -like.
5' AGUGCUGGUGGUGGCGGCGGA 3'