Table 1. Accuracy of structural characterization of distant genomes by threading.
Organism / Superkingdom / Number of ORFs / Z>3.5 / % / Z>2.9 / % / Z>2.7 / %aeropyrum_pernix_strain_K1 / Archaea / 2693 / 349 / 12.96 / 1610 / 59.78 / 2202 / 81.768
methanobacterium_thermoautotrophicum
_strain_deltaH / Archaea / 1868 / 344 / 18.415 / 1356 / 72.59 / 1672 / 89.507
methanococcus_jannaschii_strain_DSM2661 / Archaea / 1714 / 303 / 17.678 / 1209 / 70.54 / 1507 / 87.923
pyrococcus_abyssi_strain_GE5 / Archaea / 1764 / 349 / 19.785 / 1326 / 75.17 / 1579 / 89.512
pyrococcus_horikoshii_strain_OT3 / Archaea / 2063 / 310 / 15.027 / 1344 / 65.15 / 1737 / 84.198
thermoplasma_acidophilum / Archaea / 1477 / 310 / 20.988 / 1080 / 73.12 / 1300 / 88.016
aquifex_aeolicus_strain_VF5 / Bacteria / 1521 / 368 / 24.195 / 1160 / 76.27 / 1396 / 91.782
buchnera_sp_strain_APS / Bacteria / 563 / 200 / 35.524 / 440 / 78.15 / 504 / 89.52
campylobacter_jejuni_strain_NCTC11168 / Bacteria / 1633 / 383 / 23.454 / 1212 / 74.22 / 1460 / 89.406
chlamydia_trachomatis_D / Bacteria / 893 / 228 / 25.532 / 639 / 71.56 / 774 / 86.674
chlamydia_trachomatis_strain_MoPn / Bacteria / 908 / 229 / 25.22 / 633 / 69.71 / 789 / 86.894
chlamydophila_pneumoniae_strain_AR39 / Bacteria / 996 / 244 / 24.498 / 678 / 68.07 / 840 / 84.337
chlamydophila_pneumoniae_strain_CWL029 / Bacteria / 1051 / 258 / 24.548 / 745 / 70.88 / 917 / 87.25
chlamydophila_pneumoniae_strain_J138 / Bacteria / 1069 / 259 / 24.228 / 751 / 70.25 / 931 / 87.091
escherichia_coli_strain_CFT073 / Bacteria / 5378 / 1154 / 21.458 / 3621 / 67.33 / 4501 / 83.693
escherichia_coli_strain_K12 / Bacteria / 4288 / 1057 / 24.65 / 3130 / 72.99 / 3797 / 88.549
escherichia_coli_strain_O157 / Bacteria / 5281 / 1145 / 21.681 / 3629 / 68.72 / 4491 / 85.041
escherichia_coli_strain_O157_EDL933 / Bacteria / 5349 / 1152 / 21.537 / 3663 / 68.48 / 4538 / 84.838
mycobacterium_tuberculosis_CSU93 / Bacteria / 3917 / 932 / 23.794 / 2857 / 72.94 / 3474 / 88.69
mycoplasma_genitalium_strain_G37 / Bacteria / 479 / 136 / 28.392 / 336 / 70.15 / 420 / 87.683
mycoplasma_pneumoniae_strain_M129 / Bacteria / 687 / 163 / 23.726 / 491 / 71.47 / 605 / 88.064
pseudomonas_aeruginosa_strain_PAO1 / Bacteria / 5564 / 1388 / 24.946 / 4104 / 73.76 / 4976 / 89.432
rickettsia_prowazekii_madridE / Bacteria / 833 / 195 / 23.409 / 631 / 75.75 / 745 / 89.436
salmonella_typhi / Bacteria / 4394 / 963 / 21.916 / 3097 / 70.48 / 3809 / 86.686
salmonella_typhimurium_strain_LT2 / Bacteria / 4450 / 1020 / 22.921 / 3185 / 71.57 / 3921 / 88.112
synechocystis_sp_strain_PCC6803 / Bacteria / 3168 / 664 / 20.96 / 2171 / 68.53 / 2734 / 86.301
thermotoga_maritima_strain_MSB8 / Bacteria / 1845 / 461 / 24.986 / 1382 / 74.91 / 1667 / 90.352
treponema_pallidum_strain_Nichols / Bacteria / 1030 / 241 / 23.398 / 738 / 71.65 / 883 / 85.728
ureaplasma_urealyticum_strain_serovar3 / Bacteria / 610 / 144 / 23.607 / 382 / 62.62 / 472 / 77.377
vibrio_cholerae_strain_N16961 / Bacteria / 3827 / 825 / 21.557 / 2532 / 66.16 / 3174 / 82.937
xylella_fastidiosa / Bacteria / 2765 / 529 / 19.132 / 1718 / 62.13 / 2203 / 79.675
caenorhabditis_elegans / Eukaryota / 17096 / 4010 / 23.456 / 11986 / 70.11 / 14430 / 84.406
drosophila_melanogaster / Eukaryota / 14334 / 3995 / 27.871 / 9407 / 65.63 / 11152 / 77.801
homo_sapien / Eukaryota / 30584 / 6794 / 22.214 / 18413 / 60.2 / 23269 / 76.082
mus_musculus / Eukaryota / 23426 / 3264 / 13.933 / 11898 / 50.79 / 16321 / 69.67
plasmodium_falciparum / Eukaryota / 2072 / 274 / 13.224 / 991 / 47.83 / 1362 / 65.734
saccharomyces_cerevisiae / Eukaryota / 6298 / 1600 / 25.405 / 4028 / 63.96 / 4881 / 77.501
TOTAL / 167,888 / 36,240 / 21.56 / 108,573 / 64.67 / 135433 / 80.67
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