Sources of Genes and Sequences

SoxR gene

GenBank Escherichia coli E24377A

http://www.ncbi.nlm.nih.gov/nuccore/NC_009801.1/from=4616553&to=4617017&report=fasta

SoxS Promoter- taken from paper

http://iai.asm.org/cgi/reprint/73/5/2958?maxtoshow=&HITS=10&hits=10& RESULTFORMAT =&fulltext=coli&searchid=1&FIRSTINDEX=520&resourcetype=HWFIG

Pseudomonas aeruginosa SoxR Does Not Conform to the Archetypal Paradigm for SoxR- Dependent Regulation of the Bacterial Oxidative Stress Adaptive Response ~Palma et al.

Blh gene – altered for restriction sites

http://www.jbc.org/cgi/reprint/M109.002618v1

In vitro characterization of a recombinant Blh protein from an uncultured marine bacterium as a β-carotene 15,15′-dioxygenase ~Kim et al.

RALDH II gene - altered for restriction sites

http://www.jbc.org/cgi/reprint/271/27/16288

Cloning of a cDNA Encoding an Aldehyde Dehydrogenase and Its Expression in Escherichia coli ~Xianshu Wang, Peter Penzes, and Joseph L. Napoli‡

IL-6 + HylA (hIL-6 hlyAs)- altered for restriction sites

Compilation of several papers

1.  http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WPJ-46HJJB8-C&_user=145269&_rdoc=1&_fmt=&_orig=search&_sort=d&_docanchor=&view=c&_searchStrId=951971391&_rerunOrigin=google&_acct=C000012078&_version=1&_urlVersion=0&_userid=145269&md5=2b9264d8e315a6fcc14bf01746c0382f

Cloning and hemolysin-mediated secretory expression of a codon-optimized synthetic human interleukin-6 gene in Escherichia coli

~Yuanyi Li, Carol X. Chen1, Bernd-Ulrich von Specht and Heinz P. Hahn

2.  http://www.springerlink.com/content/q314gph35300u261/

Analysis of the haemolysin secretion system by PhoA-HlyA fusion proteins

~J. Hess, I.Gentschev, W. Goebel and T. Jarchau

  1. http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6T39-3W269GC-2M&_user=145269&_rdoc=1&_fmt=&_orig=search&_sort=d&_docanchor=&view=c&_searchStrId=951974403&_rerunOrigin=google&_acct=C000012078&_version=1&_urlVersion=0&_userid=145269&md5=7236e3bb86e98de152d98afbbd672be5

Development of antigen-delivery systems, based on the Escherichia coli hemolysin secretion pathway

~Ivaylo Gentschev, Hans Mollenkopf , Zeljka Sokolovic, Jorgen Hess, et al.

4.  http://www.springerlink.com/content/k764100h61145477/

Mutations affecting activity and transport of haemolysin in Escherichia coli

~Albrecht Ludwig, Monika Vogel and Werner Goebel

trp-operon- altered for restriction sites

http://www.pnas.org/content/75/11/5580.full.pdf?ck=nck

Naturally occurring promoter down mutation: Nucleotide sequence of the trp promoter/operator/leader region of Shigella dysenteriae 16

~Giuseppe Miozzari and Charles Yanofsky

TrpR- trp repressor

GenBank Escherichia coli IAI1

http://www.ncbi.nlm.nih.gov/nuccore/218552585?from=4690442&to=4690768& report=g

bwithparts

TolC gene- altered for restriction sites and unknown portion of sequence

GenBank Escherichia coli str. K-12 substr. MG1655

http://www.ncbi.nlm.nih.gov/nuccore/NC_000913.2/from=3176137&to=3177618&report=fasta

HylR gene- altered for restriction sites

http://www.jbc.org/cgi/reprint/271/27/16288

Cloning of a cDNA Encoding an Aldehyde Dehydrogenase and Its Expression in Escherichia coli ~Xianshu Wang, Peter Penzes, and Joseph L. Napoli‡

HylC gene

GenBank E. coli str. CFT073

http://www.ncbi.nlm.nih.gov/nuccore/NC_004431.1/from=3418210&to=3418884&report=fasta

HylB gene- altered for restriction sites

GenBank E. coli str. CFT073

http://www.ncbi.nlm.nih.gov/nuccore/NC_004431.1/from=3422041&to=3424164&report=fasta

HylD gene- altered for restriction sites

GenBank E. coli str. CFT073

http://www.ncbi.nlm.nih.gov/nuccore/NC_004431.1/from=3424183&to=3425619&report=fasta

Crt B, E, I, Y genes- taken out separately though **CrtI altered for restriction sites

GenBank Erwinia Uredovora str. - accession no. D90087

http://www.ncbi.nlm.nih.gov/nuccore/22474502?ordinalpos=1&itool=EntrezSystem2.PEntrez. Sequence.Sequence_ResultsPanel.Sequence_RVDocSum