SUPPORTING INFORMATON:
FIGURE 2
Sequences in FASTA format (from data bases and predicted by ANCESCON):
>SeaUrchin
VVGGQQSLPGSAPYMGRIWHKADRTFVCGATLLNQRWVITAAHCIVLYQLQFRD
ILLYFGDHDTLTSEDHQVIAEVDQIIQHEDFDEESFDKDIALIRLKQPFAEFTDYIR
PICIPPAWLAKMLLQPDMMGRVTGWGQIAEGGPYPRYLTEVDLPVVKSKKCKDA
TTFEVTRYMFCAGYASAEEKKDACQGDSGGPFAMLHENRWYQLGIVSWGEGCAR
DSKYGYYTKILRLHSWIDRNISD
>Prechordate1
IVGGEESRPGSAPWMARLWDKRPRKFFCGASLLNDRWVITAAHCIVLLGLEARD
LLIRLGDHDTLGLEDGEVIGEVDQIIVHPDYNGETFDKDIALIRLKRPVTFTDYIL
PICLPPRELARSLLQPGLMGRVTGWGEIAEGGTYPRYLKEVDLPVVKVGKCKDS
TRFEVTRNMFCAGYKEEKRDACQGDSGGPFAMLSENRWYQLGIVSWGEGCAR
DGKYGFYTKVFRFHEWI
>AcornWorm
IVGGETSRKGSAPWMARLWDNRKSKHFCGGSVLNNWWVVTAAHCITKQGVDAST
LFIRLGDYDDVELENEEILHEVDEIIVHPDYRGSTFDSDIALIRLANKVTFTDHIL
PVCLPPREVAMSMLKKGTMGRVLGWGSIREGGTYPRYLKEVELPVRRIGECRKS
TRFSVTTNMFCAGYKLEMRGDSCKGDSGGPMVQRSTENKWQLVGIVSWGEGCAE
RDKFGFYTKVYKFNQWI
>Prechordate2
IVGGSDAEPGASPWQAMLWDKRPREFFCGASLINDRWVITAAHCILLGGVTERD
LLVRLGKHSTRGVRNLERIGMVEKIIVHPDYNGETFDRDIALIRLKRPVTFTDYIL
PVCLPDREVARSLLQPGLMGRVTGWGDLAEGRTYPRLLKVVDLPVVELPRCKDS
TRFEITDNMFCAGYKEGKRDACEGDSGGPFAMLSNNRWYQLGIVSWGEGCAR
DGKYGFYTRVFRFREWIEKLIDE
>Amphioxus
IVGGTEVEPGAFPWQAMLWDIRPTRNRYFCSGSLINKRWVITAAHCIRELGVTEQD
FIVRLGKHTSVRGVLEANERSYIVERIIVHPDFNGDTYESDVALLQLALPEVTFTEYIL
PICLPEIPEARRLIRPGNIGTVTGWGAQAVGGRTSEKLMKVVSLPVVSLRRCRDS
HPQYAQEISQNMFCAGRREGGKDACEGDSGGPFAAFDNGRWHLLGVVSWGDGCAL
RGKYGVYTRLHRFRDWITEQTEEQ
>Lamprey
VVHGDNAEEGSAPWQVMLYRKSPMDMLCGASLISDQWVLTAAHCVFYPPWDKDFTAKE
LAVRIGKHNKAGYEKDREKISNVDKIIIHSKYNWKENMERDIALLHLEKPITFTQYIV
PICLPTRDVAVNLLKSGFKGRVTGWGNLFQTWTNNPRAQPKVLQMINLPIVDPSRCQES
TTHRITANMLCAGYEPEDVKRGDACEGDSGGPFIMKDFENKRWYQMGIVSWGEGCDR
DGKYGIYTHVYRLRKWINKVI
>Danio
IVGGDEAEVASAPWQVMLYKRSPQELLCGASLISDEWILTAAHCILYPPWNKNFTIND
IIVRLGKHSRTKYERGIEKIVAIDEIIVHPKYNWKENLNRDIALLHMKKPVVFTSEIH
PVCLPTKSIAKNLMFAGYKGRVTGWGNLRESWTSNPSNLPAVLQQIHLPIVDQSICRNS
TSVIITDNMFCAGYQPDDSKRGDACEGDSGGPFVMKSPSDNRWYQIGIVSWGEGCDR
DGKYGFYTHLFRMRRWMKKVIEK
>Human
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTEND
LLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH
PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS
TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDR
DGKYGFYTHVFRLKKWIQKVIDQFGE
FIGURE 3
Sequences in Phylip format:
58 300
F9_MO VVGGENAKPGQIPWQVILNGEIEA------FCGGAIINEKWIVTAAHCL--KPGDK--
F9_HU VVGGEDAKPGQFPWQVVLNGKVDA------FCGGSIVNEKWIVTAAHCV--ETGVK--
F10_MO IVGGRECKDGECPWQALLINEDNE------GFCGGTILNEFYILTAAHCL--HQARR--
F10_HU IVGGQECKDGECPWQALLINEENE------GFCGGTILSEFYILTAAHCL--YQAKR--
F10_DA IVNGVECPPGDCPWQALLINENNM------GFCGGTILTEHFILSAAHCM--NESLS--
F10_1_LA IAGGEECPLGECPWQVLILDKKGE------GFCGGTILNREWVLTAAHCI--PSEP---
F10_2_LA IAGGMDCPRGDCPWQALVKLENN------LYCGGTILNLEWILTAAHCV--PLKP---
F9_DA IVGGDEAIPGEIPWQVVFLEKVNKI------VFCGGSLLSEEWVITAAHCV--EGKQGS-
F7_MO IVGGNVCPKGECPWQAVLKINGLL------LCGAVLLDARWIVTAAHCFDNIRYWGN-
F7_HU IVGGKVCPKGECPWQVLLLVNGAQ------LCGGTLINTIWVVSAAHCFDKIKNWRN-
F7_DA IVGGSECPKGHCPWQVLLKYGEKG------FCGGVIYKPTWILTAAHCLEKLKVKF--
F7_LA VVGGKECPRGQCPWQVLISRKGAP------VCGGTILSPQWILTAAHCT-IYETKN--
PT_MO IVEGWDAEKGIAPWQVMLFRKSPQ------ELLCGASLISDRWVLTAAHCILYP------
PT_HU IVEGSDAEIGMSPWQVMLFRKSPQ------ELLCGASLISDRWVLTAAHCLLYP------
PT_OP IVHGHNVEPGTAPWQVMLFRQRPQ------EMLCGASLISDRWVLTAAHCIFYP------
PT_CR VVKGEDAEVGSAPWQVMLFRKNPQ------ELLCGASLISDRWILTAAHCLFYP------
PT_TU VVAGEDAEVGSAPWQVMLFRKSPQ------ELLCGASLISDRWVLTAAHCLLYP------
PT_SN IVKGVDAEVGSAPWQVMLFKKKPQ------ELVCGASLISNRWVLTAAHCIFYP------
PT_TA VVGGDDAEVGSSPWQVMLYKKSPQ------ELLCGASLISDSWILTAAHCLFYP------
PT_ST VVHGDDAEVGSSPWQVMLYKKSPQ------ELLCGASLISDSWVLTAAHCLYYP------
PT_CH VVHGNDAEVGSAPWQVMLYKKSPQ------ELLCGASLISNSWILTAAHCLLYP------
PT_XE IVKGETAEPGSAPWQVMLFKKSPQ------ELLCGASLLSDRWVLSAAHCIFYP------
PT_DA IVGGDEAEVASAPWQVMLYKRSPQ------ELLCGASLISDEWILTAAHCILYP------
PT_HF VVHGDNAELGVAPWQVMLYRKRPQ------GMLCGASLISDKWVLTAAHCILYP------
PT_LA VVHGDNAEEGSAPWQVMLYRKSPM------DMLCGASLISDQWVLTAAHCVFYP------
001193031 VIGGNTAKNGSAPYMVRIWEYRNEKVVDPWTFICGATLLDQRWILTAAHCMFD------
788297 VVGGTTANHGSAPFMVRIREKRTDKVVDPWTFICGATLLDQRWILTAAHCMFD------
783851 VVGGQQSLPGSAPYMGRIWHKADR------TFVCGATLLNQRWVITAAHCIVL------
002740278 IVGGETSRKGSAPWMARLWDNRKS------KHFCGGSVLNNWWVVTAAHCITK------
001176043 ISTGMRAPRGAAPWMAQLWNVQSG------RMFCAGSIINEYWIITAAHCVEVGLSFCIS
002587250 IVGGTEVEPGAFPWQAMLWDIRPTRN----RYFCSGSLINKRWVITAAHCIRELGVT---
002613980 IIDGDRVLQHRGDLVFTAVSLTDSGR----YTCTARSGEGDRSIQAHAVLNVDIDVNNV-
TPSB2 IVGGQEAPRSKWPWQVSLRVRDRYW-----MHFCGGSLIHPQWVLTAAHCVGPDVKD---
TPSG1 IVGGHAAPAGAWPWQASLRLRR------VHVCGGSLLSPQWVLTAAHCFS-GSLN---
PRSS22 VVGGEDSTDSEWPWIVSIQKNG------THHCAGSLLTSRWVITAAHCFKDNLNK---
PRSS33 IVGGRDGRDGEWPWQASIQHRG------AHVCGGSLIAPQWVLTAAHCFPR-RAL---
TSP50 TLRDPEAVARRWPWMVSVRANG------THICAGTIIASQWVLTVAHCLIWRDVI---
002596007 IVGGTVAAPGSWPWQVSLGYGSNG------QHVCGATLIAPDWVLSAAHCFAQLSTN---
ACE86411 IVGGSVATPGSWPWQVSLGYGSNG------QHVCGATLIAPEWVLSAAHCFAQLSTN---
002596012 VVGGEAAVPGSWPWQASLMTS------YHFCGGSLIHPEWILTAAHCFADDPT----
HGF_HU VVNGIPTRTNIG-WMVSLRYRN------KHICGGSLIKESWVLTARQCFP-SRD----
PLG_HU VVGGCVAHPHSWPWQVSLRTRFG------MHFCGGTLISPEWVLTAAHCLEKSPR----
AAO12215 IVGGDPVNKGDVPWQVSLQREGFFGR----SHFCGGSILDADTVLTAAHCTDGQVP----
sca_542_BRIVGGSVVEEHSYPWQVYLNCDGFL------CGGALLNELWVITAAHCIT-KDP----
TR1_HU IVGGYNCEENSVPYQVSLN----SGY-----HFCGGSLINEQWVVSAGHCYKSR------
TR2_HU IVGGYICEENSVPYQVSLN----SGY-----HFCGGSLISEQWVVSAGHCYKSR------
TR3_HU IVGGYTCEENSLPYQVSLN----SGS-----HFCGGSLISEQWVVSAAHCYKTR------
TR5_MO IVGGYTCPKHSVPYQVSLN----DGI----SHQCGGSLINDQWVLSAAHCYKR------
002589500 IIGGFEATPGSVPWQVSLQ----RSG----SHFCGGTLLNSQWVLSAAHCLVSG------
002589891 IVGGNEAAPGSYPWQASLRQYGYSGG----FHVCGGALLSNRWVVTAAHCIVNG------
sca_384_BRIVGGNIAAPGSYPWQVGLLNVHAVR------PFCGGALLSENWVVTVAQCIGDP------
001633098 IVGGAAANPGDWPWQAQLR---TTTG----FPYCGGSLIHSNWVLTAAHCISSKRP----
MASP1_HU IFNGRPAQKGTTPWIAMLSHLN---G----QPFCGGSLLGSSWIVTAAHCLHQSLDPEDP
TPS11B_HU IVNGKSSLEGAWPWQASMQWK----G----RHYCGASLISSRWLLSAAHCFAKKNNSKDW
PC_HU LIDGKMTRRGDSPWQVVLLDSKKK------LACGAVLIHPSWVLTAAHCMDESKK----
PC_DA VMGGNVGKRGESPWQALILNHLGR------FHCGGVLIDENWVLTAAHCLETSSK----
MASP2_HU IYGGQKAKPGDFPWQVLILGG------TTAAGALLYDNWVLTAAHAVYEQKHDAS-
PZ_HU TSEKRAPDLQDLPWQVKLTNSEGK------DFCGGVIIRENFVLTTAKCS------
------IEVVAGEYNIDKKEDTEQ--RRNVIRTIPHHQYNATI----NKYSHDI
------ITVVAGEHNIEETEHTEQ--KRNVIRIIPHHNYNAAI----NKYNHDI
------FKVRVGDRNTEKEEGNEM--VHEVDVVIKHNKFQR------DTYDYDI
------FKVRVGDRNTEQEEGGEA--VHEVEVVIKHNRFTK------ETYDFDI
------IRVVVGEYDTLVPEGREA--THDVDEILIHKNYQP------DTYHNDI
------DIVIVGEHNRTVSEPTEQ--QISIKQMVMHNRFNN------ATYDNDI
------WNVVVGEHNLRVTESSEQ--HVPIKNIVVHSRYDP------ITFDNDL
------FFIRVGEHDVSKMEGTES--DHGIEEYHIHPRYNSQR----SLYNHDI
------ITVVMGEHDFSEKDGDEQ--VRRVTQVIMPDKY--IR----GKINHDI
------LIAVLGEHDLSEHDGDEQ--SRRVAQVIIPSTY--VP----GTTNHDI
------LRIVAGEHDLEVDEGTEQ--LIQVDQMFTHPAY--VS----ETADSDI
------LRILAGEHNVDEVEGSEQ--ELGILRIVDHPSFN-IK----LSYDNDI
--PWDKNFTENDLLVRIGKHSRTRYERNVE-KISMLEKIYVHPRYNWRENLD-----RDI
--PWDKNFTENDLLVRIGKHSRTRYERNIE-KISMLEKIYIHPRYNWRENLD-----RDI
--PWDKNYTVQDLLVRIGKHQRAKYERPIE-KIAKLEKVIIHPKYNWKENLD-----RDI
--PWDKNFTTDDLLVRIGKHYRAKYERNQE-KIVLLDKIIIHPRYNWKDNLD-----RDI
--PWDKNFTTDDILVRIGKHQRTKYEKNIE-KIALLDKIIIHPKYNWRENLD-----RDI
--PWDKNYTTDDLLVRIGKHNRIRYEQGKE-KIIFLDKIIFHPKYNWMENLD-----RDI
--PWDKNLSTSDILVRIGKHVRAKYEKNKE-KIALLDKIIIHPKYNWKENMD-----RDI
--PWDKNLTTNDILVRIGKHFRAKYEKNKE-KIALLDKIIIHPKYNWKENMD-----RDI
--PWDKNLTTNDILVRMGLHFRAKYERNKE-KIVLLDKVIIHPKYNWKENMD-----RDI
--PWDKNYTTDDILVRIGKHFRTKYERATE-RIAQLERIIVHPKYNWKENLD-----RDI
--PWNKNFTINDIIVRLGKHSRTKYERGIE-KIVAIDEIIVHPKYNWKENLN-----RDI
--PWGKNFSHNDLVVRVGKHFRAAHEKNQEQIAAIKKKIILHPRYDWKENLN-----RDI
--PWDKDFTAKELAVRIGKHNKAGYEKDRE-KISNVDKIIIHSKYNWKENME-----RDI
--KDKNLIKNENMNLFFGDYDSLFTEESEK--SRQPAEIIVHEDYDKTYFDN-----DIA
--KHENLIRKENMDLFFGDYDSKFTEETEK--SRQPAEMIVHEDFDKTNYDN-----DIA
--YQLQFR---DILLYFGDHDTLTSEDHQV--IAEVDQIIQHEDFDEESFDK-----DIA
--QGVDAS---TLFIRLGDYDDVELENEEI--LHEVDEIIVHPDYRGSTFDS-----DIA
P-FFAQSHSASTLKIQLGDYDRLMPETHQR--AYDVAEIVVHEGS-QVQLDH-----DIA
---EQDFIVRLGKHTSVRG----VLEANER--SYIVERIIVHPDFNGDTYES-----DVA
--CDMDLIPVCGRPFHAHGPDGFVVGGTEA--SHMVEEIIVHPNFNGETYES-----DIA
------LAALRVQLREQHLYY--QD---QLLPVSRIIVHP-QFYT-----AQIGADI
------SSDYQVHLGELEITL--SP---HFSTVRQIILHSSPSGQ-----PGTSGDI
------PYLFSVLLGAWQLGN--PGSRSQKVGVAWVEPHPVYSWK-----EGACADI
------PAEYRVRLGALRLGS--TSPRTLSVPVRRVLLPPDYSE------DGARGDL
------YS---VRVGSPWIDQ--MTQTASDVPVLQVIMHSRYRAQRFWSWVGQANDI
------PGSFVVKVGKHNKAS--TDSTEQSMQVAQIIVHPRYQQE-----GQNTNDI
------PGSFIVKVGKHNKAS--TDSTEQRMQVAQIIVHPRYQQD-----GQNTNDI
------PSRYTVVLGKHFSDG--SSTSQEEYSVSKVIVHEEYDDN-----ALN-KDL
------LKDYEAWLGIHDVHGRGDEKCKQVLNVSQLVYGPEG------SDL
------PSSYKVILGAHQEVN--LEPHVQEIEVSRLFLEPTR------KDI
------SGITVVAGDHV-LSTTDGD-EQVVGVASISEHPEYNSRTF------YNDI
------SDISVKLGDHN-IFYESGQ-EEKFGVEQDFPHPQYDYDKFPI---HDNDI
------IQVRLGEHN-IEVLEGN-EQFINAAKIIRHPQYDRKTLN------NDI
------IQVRLGEHN-IEVLEGN-EQFINAAKIIRHPKYNSRTLD------NDI
------IQVRLGEHN-IKVLEGN-EQFINAAKIIRHPKYNRDTLD------NDI
------LQVRLGEHN-IDVLEGG-EQFIDAEKIIRHPDYNKDTVD------NDI
------MTVVAGEHD-LSRNDGH-EQSRGVERIIPHPNYNDNTLD------NDI
------LQWVVLGDHD-RRKSTKA-KQTVKIQRVFKHPHYNDDTLV------NDI
------TFLVVVGEHD-VNNSPEW-KETVEVKQIIVHPDYSDVTLD------NNI
------AEVVVRLGAHSRLGSLTTD-MQDIKVSAIITHSNYNSRTMY------NDI
TLRDSDLLSPSDFKIILGKHWRLRSDENE--QHLGVKHTTLHPQYDPNTFE------NDV
TVN------FGVVVNKPYMTRKVQN------IIFHENYSSPGLH------DDI
------LLVRLGEYDLRRWEKWE--LDLDIKEVFVHPNYSKSTTDN------DI
------FSVRLGDYQRFKFEGSE--VTLPVKQHISHPQYNPITVDN------DI
------ALDIRMGTLKRLSPHYTQA----WSEAVFIHEGYTHDAGFD-----NDI
------LLHRNITVKTYFNRTSQDPLMIKITHVHVHMRYDADAGEN------DL
ALLELDKPLILNSYVTPICVANREYTN--IFLKFGSGYVSGWGKVFNKGRQ------AS
ALLELDEPLVLNSYVTPICIADKEYTN--IFLKFGSGYVSGWGRVFHKGRS------AL
AVLRLKTPITFRMNVAPACLPQKDWAE-STLMTQKTGIVSGFGRTHEKGRQ------SN
AVLRLKTPITFRMNVAPACLPERDWAE-STLMTQKTGIVSGFGRTHEKGRQ------ST
ALIKLSKPIKFTKYIIPACLPEMKFAE-RVLMQQDDGLVSGFGRVREGGLS------ST
ALLQMSEPIKFNKYVLPACLPEPDFAD-NVLKEELA-RISGWGYLRERGLK------AK
ALLQLERPLNFSRLVLPACLPERDFAD-KVLVEEQS-RISGWGSLHHRGIK------AT
ALLKLKKPVILFDYAVPICLGSKDFTE-NLLQSAENSLVSGWGRLRYGGIE------SN
ALLRLHRPVTFTDYVVPLCLPEKSFSE-NTLARIRFSRVSGWGQLLDRGAT------AL
ALLRLHQPVVLTDHVVPLCLPERTFSE-RTLAFVRFSLVSGWGQLLDRGAT------AL
ALLRLRTPIVYSVYAVPVCLPLREMAE-RELWAVSKHTVSGWGKRSEDGPT------SR
SLIQLSRPIQFTRYALPICLPNQRFVR-GVLRSVVAGTVSGWGKLNEFGPA------AG
ALLKLKKPVPFSDYIHPVCLPDKQTVT-SLLRAGYKGRVTGWGNLRETWTTNINEIQPSV
ALMKLKKPVAFSDYIHPVCLPDRETAA-SLLQAGYKGRVTGWGNLKETWTANVGKGQPSV
ALLKLKNPITFSDYIHPICLPSKEMVQ-KLFLSGHKGRVTGWGNLKETWTS-TKENLPEI
ALMHLKKPVTFSNFIHPICLPTKEIVQ-RLMLEGYKGRVSGWGNLFETWSS-TPASLPPV
ALLLLKKPIVFSDRIHPVCLPTRELVQ-SLMLSGFKGRVSGWGNLYETWSS-GTTALPSV
ALLRLSKPVPFSDYIHPICLPTKQVVQ-SLLLTGYKGRVTGWGNLFDTWGA-GSRQLPSV
ALMHLKRPISFSDYIHPVCLPTKEVVQ-RLMLAGYKGRVTGWGNLKETWAT-SPSNLPTV
ALMHLKRPVIFSDYIHPVCLPTKEVVQ-RLMLAGYKGRVTGWGNLKETWAT-NPSNLPTV
ALLHLKRPVIFSDYIHPVCLPTKELVQ-RLMLAGFKGRVTGWGNLKETWAT-TPENLPTV
ALIQLKRPVAFSNYIHPVCLPTKDTVV-KLLAAGYKGRVTGWGNLQETWTS-GAQNLPQA
ALLHMKKPVVFTSEIHPVCLPTKSIAK-NLMFAGYKGRVTGWGNLRESWTS-NPSNLPAV
ALILLKRPVHFTKYVAPVCLPESAVAR-KLMRAGYKGRVTGWGNLQEMWSL-SSKVHPRV
ALLHLEKPITFTQYIVPICLPTRDVAV-NLLKSGFKGRVTGWGNLFQTWTN-NPRAQPKV
LIRIDPPLWNFTPYIRPICLAPGVLAS-RIMETNINGRVTGWGQTSLKSST------NRL
LIRIDPPLWEFTPYIRPICLAPGVLAS-SIMETDNNGRVTGWGQESVGSST------SRF
LIRLKQPFAEFTDYIRPICIPPAWLAK-MLLQPDMMGRVTGWGQIAEGGPY------PRY
LIRLAN-KVTFTDHILPVCLPPREVAM-SMLKKGTMGRVLGWGSIREGGTY------PRY
LIKLSE-RIEFNNYVRPICFPTTKLAK-SFLKSGSYGSVAGWGRKGDNMDY------PRY
LLQLALPEVTFTEYILPICLPEIPEAR-RLIRPGNIGTVTGWGAQAVGGRT------SEK
LLKLSGPEVTFTEHILPICLPEVLDAR-RLVRSGQIGTVTGWGAMEDGGPY------STT
ALLELEEPVNVSSHVHTVTLPPASE----TFPPG------
ALVELSVPVTLSSRILPVCLPEASD----DFCPGIRCWVTGWGYTREGEPLP----PPYS
ALVRLERSIQFSERVLPICLPDASI----HLPPNTHCWISGWGSIQDGVPLP----HPQT
ALLQLRRPVPLSARVQPVCLPVPGA----RPPPGTPCRVTGWGSLRPGVPLP----EWRP
GLLKLKQELKYSNYVRPICLPGTDY----VLKDHSRCTVTGWGLSKADGMWP----QFRT
ALLKLVGRVQLNDYVMQACITETEA------PEGAMCVATGFGNTEGTGGD------NY
ALLKLTQRVQLNDYVSQACITETEA------PEGAICVATGFGNTEGTGGD------NY
TLLKLSRPAVLGQYIQTVCLPQSASD---DPPAGTTCVTTGYGDTQGTGND------DV
VLMKLARPAVLDDFVSTIDLPNYGC----TIPEKTSCSVYGWGYTGLINYD------GL
ALLKLSSPAVITDKVIPACLPSPNY----VVADRTECFITGWGETQGTFGA------GL
CVLKLLNSIIIGGNVQPVGLPFPNA----EVDEGVMATVSGWG-TTSAGGS-----LSDV
ALLKLKRPASFNKFIMPICLPDATF----AVDAGTDLTVTGWG-TTSESGD-----VSDD
MLIKLSSRAVINARVSTISLPTA------PPATGTKCLISGWGNTASSGAD-----YPDE
LLIKLSSPAVINSRVSAISLPTA------PPAAGTESLISGWGNTLSSGAD-----YPDE
MLIKLSSPAVINARVSTISLPTT------PPAAGTECLISGWGNTLSFGAD-----YPDE
MLIKLKSPAILNSQVSTVSLPRS------CASTNAQCLVSGWGNTVSIGGK-----YPAL
MLIKLSSPVTISSWVSPASLPDS------MVSAGTNVIVTGWGNTGSN------YPDK
ALLKLQSAVS----VQPVCLPDPAK----EDPAGTVVAVTGWG-TVSEGGH-----TSSV
ALVKLESPVSLNDYVQPICLPKRDF----KP-EGKVVTVAGWG-HTSEGGA-----PSPV
ALLKLATPAQTNSKVGFVCLPETEA----SPSDGTTCWITGWG-TLSSGGS-----PPDI
ALVELLESPVLNAFVMPICLPEGPQ------QEGAMVIVSGWG--KQFLQR-----FPET
ALVQLAEEVSFTEYIRKICLPEAKMK----LSENDNVVVTGWG--TLYMNGS----FPVI
ALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNR--TF
ALLRLDGPVKFSTYILPACLPSLELAKRMLHRNGTVTIITGWGKNN----QSATSY--NS
ALIKLNNKVVINSNITPICLPRKEAES--FMRTDDIGTASGWGLTQRGFLAR------
SLLELEWPIQCPGAGLPVCTPEKDFAE-HLLIPRTRGLLSGWARNGTDLGN------
ILQYLRVPLVDRATCLRSTT------FTIYNNMFCAGYREGGK---DSCEGDSGG
VLQYLRVPLVDRATCLRSTK------FTIYNNMFCAGFHEGGR---DSCQGDSGG
ILKMLEVPYVDRNTCKLSTS------FSITQNMFCAGYEAKLE---DACQGDSGG
RLKMLEVPYVDRNSCKLSSS------FIITQNMFCAGYDTKQE---DACQGDSGG
ILQKLTVPYVNRAKCIESSN------FKISGRMFCAGYDQEEK---DACQGDSGG
VLQTSFVPYQDMARCKESSS------YTITKNMFCAGYSDSKT---DACQGDSGG
VLQIAEVPFVDTLRCKESSS------SLVTKNMFCAGYSDGTK---DACQHDSGG
VLQKVELPYVDRIKCKGSST------DSISRFMFCAGYSTVRK---DACQGDSGG
ELMSIEVPRLMTQDCLEHAKH------SSNTPKITENMFCAGYMDGTK---DACKGDSGG
ELMVLNVPRLMTQDCLQQSRK------VGDSPNITEYMFCAGYSDGSK---DSCKGDSGG
LLRRLLVPRIRTQECVQVS------NLTLTSNMFCAGYIEGRQ---DSCKGDSGG
ILQRLEVPYVDDEQCRAAMG------SKVITANMFCAGYETGGQ---DSCSGDSGG
LQVVN-LPIVERPVCKASTR------IRITDNMFCAGFKVNDTKRGDACEGDSGG
LQVVN-LPIVERPVCKDSTR------IRITDNMFCAGYKPDEGKRGDACEGDSGG
MQKIS-LPIVEQNLCRASTR------IKITDNMFCAGYPPNVEERGDSCEGDSGG
LQQVN-LPIVAQQNCRASTK------IKITDNMFCAGYSAEDTKRGDA------
LQQVN-LPIVSQDTCKASTN------IKLTENMFCAGYGPEDPKRGDA------
LQQVN-LPIVNRDICKASTN------IKVTDNMFCAGYSPEESKRGDA------
LQQVN-LPIVDQSTCKASTR------VKVTDNMFCAGYSPDALKRGDACEGDSGG
LQQLN-VPIVDQDTCKASTK------VKVTDNMFCAGYSPEDSKRGDACEGDSGG
LQQLN-LPIVDQNTCKASTR------VKVTDNMFCAGYSPEDSKRGDACEGDSGG
LQQIN-LPIVDQETCKSSTN------IKVTDNMFCAGYNPEDSKRGDACEGDSGG
LQQIH-LPIVDQSICRNSTS------VIITDNMFCAGYQPDDSKRGDACEGDSGG
LQLIN-LPIVDTRTCHDSTT------IKITRNMFCAGYSPEDMKRGDPCEGDSGG
LQMIN-LPIVDPSRCQESTT------HRITANMLCAGYEPEDVKRGDACEGDSGG
MKEVE-LPIVDRQTCEESITE------GEGRVTENMFCAGYHDA---QHDSCKGDSGG
MKEVE-LPIVDRQTCEDSIDE------DEGEFTDNMFCAGYDSG---KKDSCEGDSGG
LTEVD-LPVVKSKKCKDATT------FEVTRYMFCAGYASAEE-KKDACQGDSGG
LKEVE-LPVRRIGECRKSTR------FSVTTNMFCAGYKLEM--RGDSCKGDSGG
LNQVF-VPVVERKTCRRATD------YDFTSNMFCAGFREAN--RGDACEGDSGA
LMKVVSLPVVSLRRCRDSHPQ------YAQEISQNMFCAGRREGG---KDACEGDSGG
LMRVS-LPVVSLQRCRRAHPQ------FAEDISQNMFCAGRASGG---RDTCKGDSGG
------
LREVK-VSVVDTETCRRDYP--GPGGS-----ILQPDMLCA---RGPG---DACQDDSGG
LQKLK-VPIIDSEVCSHLYW--RGAGQ----GPITEDMLCAGYLEGER---DACLGDSGG
LQGVR-VPLLDSRTCDGLYH--VGADVPQAERIVLPGSLCAGYPQGHK---DACQGDSGG
IQEKE-VIILNNKECDNFYH--NFTKIPTLVQIIKSQMMCAED-THRE---KFCYELTGE
LKQVQ-LPLLSNTQCR------SWLG--SVIQSSMVCAGYESGGS---DTCQGDSGG
LKQVQ-LPSLSNAQCR------SWLG--SVIKSTMVCAGYEGGGS---DTCQGDSGG
LKQAR-VPLVSNADCN------VASSYDGEITEFMMCAGFQEGGA---DACQGDSGG
LRVAH-LYIMGNEKCS------QHHRGKVTLNESEICAGAEKIGS---GPCEGDYGG
LKEAQ-LPVIENKVCN------RYEFLNGRVQSTELCAGHLAGGT---DSCQGDSGG
LLAVN-VPVISDAECRGAY------GETDVADSMICAGDLANGGI---DSCQGDSGG
LQEVV-VSVYSDADCVKAL------GSSVNPSTMICAGYPE-GGK---DSCQGDSGG
LQCLD-APVLSQAKCEAS------YPGKITSNMFCVGFLEGGK---DSCQGDSGG
LQCLD-APVLSQAECEAS------YPGKITNNMFCVGFLEGGK---DSCQGDSGG
LKCLD-APVLTQAECKAS------YPGKITNSMFCVGFLEGGK---DSCQRDSGG
LQCLE-APVLSASSCKKS------YPGQITSNMFCLGFLEGGK---DSCDGDSGG
LQKVR-VPVISRATCNGAN------AYAGAVTTNMFCAGYMDGGK---DSCQGDSGG
LLQAN-MPLVDDSYCVDVYNIIADALYGFDTKVDPKIMMCTGYREGGV---DTCQGDSGG
LLQAE-VPVLTAAECYASY------VTNWIIAKSMICTGYAAGGV---DTCQGDSGG
LQEAS-VPVVSRARCEQAYT------DPNQIHDSMLCAGLDNGGV---DTCQGDSGG
LMEIE-IPIVDHSTCQKAYAP------LKKKVTRDMICAGEKEGGK---DACAGDSGG
LQEDF-LKIIDNKICNASYA------YSGFVTDTMLCAGFMSGEA---DACQNDSGG
VLNFIKIPVVPHNECSEVMSN------MVSENMLCAGILGDRQ---DACEGDSGG
TLHYVELPIVDNKECSRHMMN------NLSDNMLCAGVLGQVK---DACEGDSGG
NLMYVDIPIVDHQKCTAAYEK-----PPYPRGSVTANMLCAGLESGGK---DSCRGDSGG
SLTTRPVTLVEGEECGQVLN------VTVTTRTYCERSSVAAM------HWMD
PHVTEVEG--TSFLTGIISWGEE-CAMKGKYGIYTKVSRYVNWIKEKTK------
PHVTEVEG--TSFLTGIISWGEE-CAMKGKYGIYTKVSRYVNWIKEKTKLT------
PHVTRFKN--TYYVTGIVSWGEG-CARKGKYGIYTKVTTFLKWIDRSMK------
PHVTRFKD--TYFVTGIVSWGEG-CARKGKYGIYTKVTAFLKWIDRSMK------
PHVTRFKN--TWFITGVVSWGEG-CARKGKYGVYTQVSKYIMWINNAMT------
PHVTPYAN--TWFSTGIISWGEG-CNRKGKFGIYARVSRYLPWIDTVMK------
PHVTIFKD--TWFATGIISWGEG-CARKGKYGVYTRVSRYLLWMHQVMQ------
PHATRYKD--TWFLTGIVSWGEE-CAKEGKYGIYTRISKYMAWITNITR------
PHATHYHG--TWYLTGVVSWGEG-CAAIGHIGVYTRVSQYIDWLVRHMD------
PHATHYRG--TWYLTGIVSWGQG-CATVGHFGVYTRVSQYIEWLQKLMRSEPRPGV----
PLVTRYRD--TAFLLGIVSWGKG-CARPGSYGIYTRVSNYLQWIRQTTN------
PHATRYGS--TWFLTGVVSWGKG-CAREGKFGVYTKVLNYLDWIAQTMA------
PFVMKSPFNNRWYQMGIVSWGEG-CDRKGKYGFYTHVFRLKRWIQKVID------
PFVMKSPFNNRWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKVIDQFGE------
PFVMKNPFDKRWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKAID------
------
------
------
PFVMKNPDDNRWYQVGIVSWGEG-CDRDGKYGFYTHVFRLKKWIRKVIE------
PFVMKSPDDSRWYQVGIVSWGEG-CDRDGKYGFYTHVFRLKKWIRKAIE------
PFVMKNPDDNRWYQVGIVSWGEG-CDRDGKYGFYTHVFRLKKWMRKTIE------
PFVMKDPDTGRWVQLGIVSWGEG-CDRDNKYGFYVHVHRMRKWIMKTVEKFGS------
PFVMKSPSDNRWYQIGIVSWGEG-CDRDGKYGFYTHLFRMRRWMKKVIEKTDSGDDE---
PFVMKNPEQNRWYQVGIVSWGEG-CDKDGKYGFYTHLFRMLRWLKKIVN------
PFIMKDFENKRWYQMGIVSWGEG-CDRDGKYGIYTHVYRLRKWINKVIGEPDT------
PFAFRHDDG-RWYQLGIVSWGVG-CAAEGEYGFYTSISRYLHWLRSKNV------
PFAFRHDDG-RWYQLGIVSWGVG-CAKVGEYGFYTSVSRYLHWLRSKNV------
PFAMLHEN--RWYQLGIVSWGEG-CARDSKYGYYTKILRLHSWIDRNISD------
PMVQRSTEN-KWQLVGIVSWGEG-CAERDKFGFYTKVYKFNQWI------
PFSMQHANG-RWYILGTVSWGDA-CDDQDKYGYYTRLHRYTSWIKRHTR------
PFAAFDNG--RWHLLGVVSWGDG-CALRGKYGVYTRLHRFRDWITEQTEEQ------
PFASYDNG--RWVLLGIVSWGDG-CVLQGKYGVYTRVHRFREWIVTHIE------
------
PLVCQVN--GAWVQAGTVSWGEG-CGRPNRPGVYTRVPAYVNWIRRHIT------
PLMCQVD--GAWLLAGIISWGEG-CAERNRPGVYISLSAHRSWVEKIVQ------
PLTCLQS--GSWVLVGVVSWGKG-CALPNRPGVYTSVATYSPWIQARVS------
PLVCSME--GTWYLVGLVSWGAG-CQKSEAPPIYLQVSSYQHWIWDCLN------
PLTCPRL--GKWFVSGVTSFGQG-CADPRKPGVYTRVGYYIDWILKYTA------
PLTCPRL--GQWFVSGVTSFGQG-CADPRKPGVYTRVGYYIDWILKYTA------
PLVCPKQ--GQWYLNGVVSWGYG-CAQPNYPGVYARVSSMLDWVGQKMA------
PLVCEQH--KMRMVLGVIVPGRG-CAIPNRPGIFVRVAYYAKWIHKIILTYKVPQS----
PLVCFEK--DKYILQGVTSWGLG-CARPNKPGVYVRVSRFVTWIEGVMRNN------
PLYMGS------TIIGIVSWGYG-CAYAGYPGVYTQVSYYVSFIKSV------
PLMYFTPNEGPAVLVGIVSWGSG-CAREGKPGVYARVTTYLDWIQETM------
PVVCNG------QLQGVVSWGDG-CAQKNKPGVYTKVYNYVKWIKNTIAANS------
PVVSNG------ELQGIVSWGYG-CAQKNRPGVYTKVYNYVDWIKDTIAANS------
PVVCNG------QLQGVVSWGHG-CAWKNRPGVYTKVYNYVDWIKDTIAANS------
PVVCNG------EIQGIVSWGSV-CAMRGKPGVYTKVCNYLSWIQETMANN------
PVTRSG------TVYGVVSWGYG-CAQPNYPGVYTKVKKYTSWINVYIN------
PVVVFPP-KGQAYLAGVISWGYG-CGREFIPGVNVRVSAYVDWIRHIIDSN------
PVVLFPS-EGPAYVVGLVSWGIG-CASPGYPGVSTRVSTYVDWI------
PLVCESG--GKFVLHGATSWGYG-CAAKGKFGVYANVKYLLTWVKTQMA------
PMVTLNRERGQWYLVGTVSWGDD-CGKKDRYGVYSYIHHNKDWIQRVTGVRN------
PLAYPD-SRNIWHLVGIVSWGDG-CGKKNKPGVYTRVTSYRNWITSKTGL------
PMVASFHG--TWFLVGLVSWGEG-CGLLHNYGVYTKVSRYLDWIHGHIRDKEAPQKSWAP
PMMTLFHD--TWFLVGLVSWGEG-CGQRDKLGIYTKVASYLDWIDSVRQ------
ALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIISDF------
GSVVTREHRGSWFLTGVL--GSQPVGGQAHMVLVTKVSRYSLWFKQIMN------
Phylip consensus phylogenetic tree:
((((((F7_MO:100.0,F7_HU:100.0):100.0,(F7_DA:100.0,F7_LA:100.0):47.5):67.7,(((PC_DA:100.0,
PC_HU:100.0):100.0,PZ_HU:100.0):26.5,((((((TPSG1:100.0,(PRSS33:100.0,PRSS22:100.0):47.8):65.0,
TSP50:100.0):93.0,(((ACE86411:100.0,002596007:100.0):100.0,002596012:100.0):54.1,
(PLG_HU:100.0,HGF_HU:100.0):98.0):86.3):89.0,(((sca_384_BR:100.0,002589891:100.0):81.4,
(AAO12215:100.0,sca_542_BR:100.0):47.0):69.7,(((((TR3_HU:100.0,TR2_HU:100.0):64.3,
TR1_HU:100.0):100.0,TR5_MO:100.0):100.0,002589500:100.0):96.5,001633098:100.0):51.9):49.5):48.3,
((TPS11B_HU:100.0,MASP1_HU:100.0):83.1,MASP2_HU:100.0):48.9):37.0,(((((TPSB2:100.0,
PT_SN:100.0):36.4,PT_TU:100.0):38.6,PT_CR:100.0):92.0,(((PT_OP:100.0,(PT_HU:100.0,
PT_MO:100.0):99.0):68.2,(PT_LA:100.0,PT_HF:100.0):39.5):13.0,((PT_CH:100.0,(PT_TA:100.0,
PT_ST:100.0):67.8):96.4,(PT_DA:100.0,PT_XE:100.0):40.0):7.90):29.7):92.0,((((002587250:100.0,
002613980:100.0):100.0,001176043:100.0):23.2,(783851:100.0,(788297:100.0,
001193031:100.0):100.0):50.1):29.7,002740278:100.0):78.0):89.0):22.9):97.0):47.4,
(((F10_HU:100.0,F10_MO:100.0):100.0,F10_DA:100.0):72.5,(F10_2_LA:100.0,F10_1_LA:100.0):99.0):66.1):39.7,
(F9_HU:100.0,F9_MO:100.0):100.0):100.0,F9_DA:100.0);
Phylip consensus outfile:
Consensus tree program, version 3.69
Species in order:
1. F9 DA
2. F7 LA
3. PLG HU
4. HGF HU
5. 002596012
6. ACE86411
7. 002596007
8. TSP50
9. PRSS33
10. PRSS22
11. TPSG1
12. MASP2 HU
13. TPS11B HU
14. MASP1 HU
15. sca 384 BR
16. 002589891
17. 001633098
18. 002589500
19. TR5 MO
20. TR3 HU
21. TR2 HU
22. TR1 HU
23. sca 542 BR
24. AAO12215
25. PZ HU
26. PC DA
27. PC HU
28. 002740278
29. 002613980
30. 002587250
31. 001176043
32. 783851
33. 788297
34. 001193031
35. PT HF
36. PT CH
37. PT ST
38. PT TA
39. PT XE
40. PT LA
41. PT DA
42. TPSB2
43. PT SN
44. PT TU
45. PT CR
46. PT OP
47. PT HU
48. PT MO
49. F7 DA
50. F7 HU
51. F7 MO
52. F10 2 LA
53. F10 1 LA
54. F10 DA
55. F10 HU
56. F10 MO
57. F9 HU
58. F9 MO
Sets included in the consensus tree
Set (species in order) How many times out of 100.00
...... **.. 100.00
...... ** **...... 100.00
...... ** ...... 100.00
...... ** 100.00
...... * **...... 100.00
...... **...... 100.00
...... **...... 100.00
.....**...... 100.00
...... * *...... 100.00
...... **...... 99.00
...... **..... 99.00
..**...... 98.00
..******** ********** ********** ********** ********...... 97.00
...... *** **...... 96.50
...... ***...... 96.40
...... *** *...... 93.00
...... ****...... 92.00
...... ****** ********...... 92.00
...... *** ********** ********...... 89.00
..******** *...... 89.00
..*****...... 86.33
...... **...... 83.14
...... **...... 81.38
...... *** ****...... 78.00
...... ***.. 72.54
...... **...... **...... 69.67
...... ***...... 68.17
...... **...... 67.76
.*...... ** *...... 67.67
...... *****.. 66.08
...... ** *...... 65.00
...... * *...... 64.32
....***...... 54.13
...... **** **...... 51.85
...... ***...... 50.12
...... ****** ****...... 49.50
...... ***...... 48.86
..******** *...****** ****...... 48.30
...... ** ...... 47.75
.*...... *...... 47.45
.********* ********** ********** ********** ********** *...... 47.43
...... **...... 46.96
...... *. *...... 39.95
.********* ********** ********** ********** ********** ******.. 39.67
...... *....* ...... 39.55
...... ***...... 38.58
..******** ********** ****...... 37.00
...... **...... 36.39
...... ** ****...... 29.72
...... ****** *....***...... 29.67
...... ***...... 26.50
...... ** *...... 23.17
..******** ********** ****...*** ********** ********...... 22.86
...... *....* .....***...... 13.00
...... ****. *...... 7.90
Sets NOT included in consensus tree:
Set (species in order) How many times out of 100.00
...... ** *...... 42.00
...... ** ..**...... 41.30
...... *...... *...... 37.14
...... ***...... 37.00
..******** *.******** ****...... 35.00
...... **...... 34.85
...... ***** ********...... 34.21
...... **...... 34.08
...... **...... *...... 34.04
..***...... 32.20
...... * *...... 32.08
...... ** *...... 31.17
...... **.*** ****...... 29.52
...... **...... 26.67
...... ******* 24.98
...... *.. ****...... 24.00
...... ***.. .****...... 23.07
...... ****. ********...... 22.88
...... *.. .***...... 22.35
..******** *.******** ****...*** ********** ********...... 22.14
...... **...... 22.07
..******** ********** ********** ********** ********** *...... 21.33
...... *.*...... 20.30
...... *.. *...... 20.19
...... ******** ****...... 20.00
...... * *...... 18.92
.*...... ** ******** 17.00
...... **** **.*...... 16.50
.*...... ** ******.. 16.00
...... ***.. .*******...... 16.00
...... **...... 15.86
...... ***.... 15.00
.********* ********** ********** ********** ********** *.....** 15.00
..******** *.******** ****.***** ********** ********...... 14.86
..******** ********** ****.***** ********** ********...... 14.36
...... *.. **...... 14.00
..******** ********** *****...... 13.75
...... ****...... 13.29
...... *.. ********** ********...... 13.25
.*...... ** *.....** 13.00
...... *** **.*...... 12.83
...... *** ...... 12.67
...... ** *.**...... 12.40
...... *....* *...... 12.36
...... *...** *...... 12.11
...... **...... 11.63
...... ** .***...... 11.48
...... ***** ********** ********...... 10.87
..******** *...**.*** ****...... 10.25
...... ***...... ***...... 10.00
..******** ********** *****..*** ********** ********...... 10.00
...... **...... 9.67
....****** *...... 9.67
.********* ********** ********** ********** ********** ***..... 9.62
...... *...... **...... 9.33
...... **.*...... 9.17
..******** ********** *******...... 9.00
...... ****.* *....***...... 9.00
...... ** ...... 8.75
...... *.*...... 8.68
..******** *...**...... **...... 8.62
...... *****. ********...... 8.55
...... *...... **...... 8.29
..******** *...... *...... 8.00
...... ****** *.******...... 8.00
...... *** ********** *.******...... 8.00
...... *...... ***...... 8.00
...... ********* ****...... 8.00
...... ***.. *...... 8.00
..******** ********** ********** ********** ********.* *...... 8.00
...... ********* ********** ********** ********...... 8.00
...... ****. *****...... 7.67
.....***** *...... 7.67
...... ****** **.*...... 7.50
...... **...... *...... 7.00
...... ****** ********** ********...... 7.00
...... *.*...... 6.88
...... ****** *...... 6.86
...... ****. ******...... 6.33
...... **. *...... 6.00
.********* ********** ********** ********** ********** *..***** 5.50
.*...... ** 5.46
...... *******...... 5.33
..******** *...****** ****...... *...... 5.00
..******** *.....*...... 5.00
...... **...... *** ********** ********...... 5.00
...... *...** .....***...... 5.00
...... ***** *....***...... 5.00
...... ****. .*******...... 5.00
...... ****.* ********...... 4.96
..******** *.....**** **...... 4.93
...... ****. *....***...... 4.80
...... *** *...... *...... 4.71
...... *.**...... 4.47
...... ***.. ..***...... 4.40
...... ****** *****...... 4.38
..******** *.******** ****...... *...... 4.14
...... *** *...... 4.12
.*...... *****.. 4.04
...... *....* ...... **...... 4.00
..******** *...****** *****...... 4.00
..******** ****..**** **...... 4.00
...... ***...... **...... 4.00
...... ****.* *...... 4.00
...... ***..**** **...... 4.00
...... *. .****...... 4.00
...... *...... *** ********** ********...... 4.00
..******** ********** ****...... *...... 3.86
...... ***..** 3.67
...... ***** *.******...... 3.60
...... ****.* .....***...... 3.50
...... **..**** **...... 3.50
...... *. *....***...... 3.50
...... *** .***...... 3.33
...... *. *****...... 3.20
...... ** *....***...... 3.20
...... ***... ..**...... 3.14
.********* ********** ********** ********** ********** ***...** 3.13
..*****...... **.*** ****...... 3.00
...... *..*** ********** ********...... 3.00
...... *...... **...... 3.00
...... ***...... ****** ********** ********...... 3.00
...... ** *...... *...... 3.00
...... *...... *...... 3.00
..******** *...**...... **...... *...... 3.00
..******** *.******** ****.**...... 3.00
..******** ********** ********** ********** ********.. .**..... 3.00
...... **.*** **.*...... 3.00
...... *.....**...... 3.00
..******** *.....**** **.*...... 3.00
...... **..*...... 3.00
..******** ********** ********** ********** ********** *.....** 3.00
...... *.. .********* ********...... 3.00
..******** ********** ********** ********** *********...... 3.00
..******** *...... *** **...... 3.00
..******** ********** ********** ********** ********.. .******* 3.00
...... ********* ********...... 3.00
...... *** *.**...... 3.00
..******** *...**...... *...... 2.83
...... ****** .....***...... 2.80
...... **...** 2.67
...... *. *.....**...... 2.50
...... *....***...... 2.50
...... ***** *...... 2.40
..******** ********** ********** ********** ********** ******** 2.38
...... *.. *...... 2.33
...... ******** ********...... 2.25
...... *...... ****** ********** ********...... 2.25
...... ****. .****...... 2.17
...... *...... *..*** ********** ********...... 2.13
.*...... ** ***...** 2.13
..*****...... ****** ****...... 2.00
...... **...... ***** ********** ********...... 2.00
..******** ********** ****.**...... 2.00
...... ** ********** ********...... 2.00
..******...... 2.00
.*...... ** *..***** 2.00
..******** ***.****** ****...... 2.00
..******** *...***... ..**...... 2.00
...... ****...... **...... 2.00
...... ***** *****...... 2.00
.********* ********** ********** ********** ********** *..*..** 2.00
...... *.. ...*...... 2.00
...... ****** *....*...... 2.00
...... ** ********...... 2.00
..******** *...****** ********** ********** ********...... 2.00
.*...... ** ****..** 2.00
..******** *...****** *****..*** ********** ********...... 2.00
..******** *.**..**** **...... 2.00
..******** **..****** *****...... 2.00
.*...... * *...... 2.00
...... ** ....****** ********...... 2.00
..******** *...****** *******...... 2.00
...... ***...... *** ********** ********...... 2.00
...... *...... ****** ********...... 2.00
..*****... ..******** ****...... 2.00
...... ***..*...... 2.00
...... *...** *....***...... 2.00
...... * *...... *...... 2.00
...... ***.. *....***...... 2.00
...... ****** .*******...... 2.00
...... *...... ***...... 2.00
...... *. .*******...... 2.00
.********* ********** ****.***** ********** ********** *...... 2.00
..******** ********** *******...... *...... 2.00
...... *. *...... 2.00
..*****.** *...... 2.00
...... ****.* *.******...... 2.00
..*****...... *...... 2.00
...... *....* .****...... 1.92
...... ****.**...... 1.88
...... ***** *.****...... 1.80
.********* ********** ********** ********** ********** ****.... 1.79
...... ***.. *****...... 1.75
...... *..*...... 1.50
...... ****** *.****...... 1.40
...... ***.. ..******...... 1.40
..******** ********** ********** ********** ********** ***...** 1.38
.********* ********** ********** ********** ********** *..***.. 1.38
...... ****.* .*******...... 1.33
...... ***.. .*****...... 1.33
...... ***** ******...... 1.29
...... * ...... **...... 1.29
.....**...... *...... 1.29
...... ***** 1.25
...... ***.. ********...... 1.20
...... *...** .*******...... 1.20
...... ****.* ...... 1.17
...... *...... *...... 1.17
..******** ********** ********** ********** ********...... ** 1.13
.*...... ***.. 1.13
...... ** *....*...... 1.08
...... ******** ****...*** ********** *.******...... 1.00
....****** *...... *...... 1.00
.....***** *...... *...... 1.00
...... ****** ..******...... 1.00
...... ********* ********** ********** *.******...... 1.00
...... *** *.**...... 1.00
..*****...... **...... *...... 1.00
...... *.** **...... 1.00
...... ********* ****.**...... 1.00
...... *****...... 1.00
...... ***.. *.******...... 1.00
...... ***...... ***** ********** ********...... 1.00
.*...... *. .******* 1.00
.********* ********** ********** ********** ********** *...**.. 1.00
...... *****.**...... 1.00
..***..*...... 1.00
..******** ********** *****...... *...... 1.00
..***...... ******** ****...... 1.00
..*****... ..******** ****.**...... 1.00
...... *...... ***...... 1.00
..******** ****..**** **.*...... 1.00
.*...... ** *..*..** 1.00
.********* ********** ********** ********** ********** ****..** 1.00
...... *...... ** 1.00
..******** *.**..*...... 1.00
...... *. .******* 1.00
...... ****** ****...*** ********** ********...... 1.00
..******** ********** ****.**...... *...... 1.00
..**...*...... 1.00
...... *....* *****...... 1.00
...... *.*...... 1.00
...... ***...... *...... 1.00
.********* ********** ********** ********** ********** *.*..... 1.00
...... ***..* ...... 1.00
...... *...** *....*...... 1.00
...... *. *****.**...... 1.00
...... *...** *****...... 1.00
...... ** .....*...... 1.00
...... ** *.....**...... 1.00
...... ****. *****.**...... 1.00
...... *** *.....*...... 1.00
...... **...... ** ...... 1.00
..**...... ******** ****...... 1.00
..******** *...****** ****...*** ********** ********...... 1.00
...... ********* *******...... 1.00
...... ****** ********** ********** ********...... 1.00
...... ***.. .****.**...... 1.00
.********* ********** ********** ********** *********. .******* 1.00
...... **..** .....***...... 1.00
...... ***** *.....**...... 1.00
..**.**...... 1.00
...... ****** *****..*** ********** ********...... 1.00
..******** *.******** ****.**...... *...... 1.00
...... ***** *****.**...... 1.00
...... *.**...... 1.00
...... ****** *****...... 1.00
...... ** *****...... 1.00
..******** *.....**** **...... *...... 1.00
...... **...... *.*...... 1.00
.********* ********** ********** ********** ********** ***.**** 1.00
...... ***.* *...... 1.00
...... ***...... ***...... 1.00
...... *** ****...... 1.00
..*****... ..******** ****.***** ********** ********...... 1.00
..******** ****..*...... 1.00
...... * *****...... 1.00
...... ** *...****** ********...... 1.00
...... ** *.....** 1.00
...... * *....***...... 1.00
..*.***...... 1.00
...... **...... ** *...... 1.00
...... ****** *****.**...... 1.00
...... * ********...... 1.00
...... ****** ******...... 1.00
...... ***** *....*...... 1.00
...... **...... ***...... 1.00
...... ***** **.*...... 1.00
.*...... ** ****.... 1.00
...... ** ....****** *.******...... 1.00
...... ****** **...... 1.00
.********* ********** ********** ********** ********** *...**** 1.00
..******** **..****** *******...... 1.00
.*...... ** *..*.... 1.00
...... ** *.....*...... 1.00
...... *.. .*...... 1.00
...... *.. **..****** ********...... 1.00
...... **.*** **...... 1.00
...... *....* *.....**...... 1.00
....*..*** *...... 1.00
...... ***.. *****.**...... 1.00
...... ****.* *****...... 1.00
...... **...... *** ****...... 1.00
..******** *...... **...... 1.00
...... *.. ********** *.******...... 1.00
...... *...... ** ...... 1.00
..*.*...... 1.00
...... ***..**** **.*...... 1.00
...... *.. *.**...... 1.00
.********* ********** ********** ********** *********...... 1.00
...... ** ..******** *.******...... 1.00
..******** *.**..**** **...... *...... 1.00
...... *....* *....***...... 1.00
..*****... .********* ********** ********** ********...... 1.00
...... ***.**...... 1.00
....***...... *...... 1.00
...... ****. ..******...... 1.00
...... ******** ****....** ...... 1.00
...... ****. *.******...... 1.00
...... ******** ****...*** ********** ********...... 1.00
...... *....* *.***.**...... 1.00
...... ****.* *.***.**...... 1.00
.*...... **..... 1.00
..******** ********** ****.***** ********** ********.* *...... 1.00
...... *...... ** 1.00
...... ** ...... **...... 0.90
...... **.** .*******...... 0.88
...... ** .*******...... 0.88
...... *..** .*******...... 0.88
...... ***** .*******...... 0.88
...... ****** *.***...... 0.86
...... * .*...... 0.83
.*...... ** ***..... 0.75
...... ** ..******** ********...... 0.75
...... ***.. ..****...... 0.73
.*...... *...... *...... ** *...... 0.71
...... *. ********...... 0.67
...... *....* .*******...... 0.67
...... *** ..**...... 0.67
...... **... *...... 0.60
...... *...... *...... 0.60
.********* ********** ****.***** ********** ********.* *...... 0.55
...... ****. *....*...... 0.50
...... *.* ...... 0.50
...... ** ***..... 0.50
...... **.*.. ..**...... 0.50
..******** *...... *...... 0.50
...... **.*** .....***...... 0.50
...... ****.*** ****...... 0.50
...... ****...... 0.50
..******** *...****** **.*...... 0.45
...... *...... *...... 0.40
...... ******...... 0.40
..******** ********** ********** ********** ********** *..***** 0.38
..******** ********** ********** ********** ********.. ...***** 0.38
.*...... ******* 0.33
...... ****. .*****...... 0.33
...... ** **...... 0.33
...... *.. ..**...... 0.33
...... ** .....***...... 0.30
..******** *.******** ****.***** ********** ********.. .******* 0.29
...... *** ...... 0.29
.********* *.******** ****.***** ********** ********** *...... 0.29
.*...... *...... ***...... ** *...... 0.29
..******** ********** ********** ********** ********.. ...***.. 0.25
...... ****.. ..***...... 0.20
...... ***** *.***...... 0.20
...... ****.. ..****...... 0.20
..******** *...... *...... 0.20
...... *...... *******...... 0.17
...... ****.* .****...... 0.17
...... *...... ****...... 0.17
...... ****.. .*******...... 0.17
...... ****** ..****...... 0.14
...... *...... *...... ******* 0.14
.********* *.******** ****.***** ********** ********** ******** 0.14
...... *...** ...... 0.14
...... *...... *...... ** 0.14
...... ****** ..***...... 0.14
...... ****** ...... 0.14
..******** ********** ********** ********** ********** ***..... 0.13
...... *..** .*****...... 0.13
..******** ********** ********** ********** ********** ******.. 0.13
...... ** ***...** 0.13
...... ***** .*****...... 0.13
...... ** .*****...... 0.13
...... **.** .*****...... 0.13
...... *...*...... 0.10
...... * .....***...... 0.10
Extended majority rule consensus tree
CONSENSUS TREE:
the numbers on the branches indicate the number
of times the partition of the species into the two sets
which are separated by that branch occurred
among the trees, out of 100.00 trees
+------F7 MO
+-100.0-|
| +------F7 HU
+------67.7-|
| | +------F7 DA
| +--47.5-|
| +------F7 LA
|
| +------PC DA
| +-100.0-|
| +------26.5-| +------PC HU
| | |
| | +------PZ HU
| |
| | +------TPSG1
| | +--65.0-|
| | | | +------PRSS33
| | +--93.0-| +--47.8-|
| | | | +------PRSS22
+--47.4-| | | |
| | | | +------TSP50
| | | +------89.0-|
| | | | | +------ACE86411
| | | | | +-100.0-|
| | | | | +--54.1-| +------002596007
| | | | | | |
| | | | +--86.3-| +------002596012
| | | | |
| | | | | +------PLG HU
| | | | +------98.0-|
| | | | +------HGF HU
| | | +--48.3-|
| | | | | +------sca 384 BR
| | | | | +--81.4-|
| | | | | | +------002589891
| +--97.0-| | | +------69.7-|
| | | | | | +------AAO12215
| | | | | +--47.0-|
| | | | | +------sca 542 BR
| | | | |
| | | | | +------TR3 HU
| | | +--49.5-| +--64.3-|
| | +--37.0-| | +-100.0-| +------TR2 HU
| | | | | | |
| | | | | +-100.0-| +------TR1 HU
| | | | | | |
| | | | | +--96.5-| +------TR5 MO
| | | | | | |
| | | | +--51.9-| +------002589500
| | | | |
| | | | +------001633098
| | | |
| | | | +------TPS11B HU
| | | | +--83.1-|
| | | +------48.9-| +------MASP1 HU
| | | |
| | | +------MASP2 HU
| | |
| | | +------TPSB2
| | | +--36.4-|
| | | +--38.6-| +------PT SN
+--39.7-| +--22.9-| | |
| | | +------92.0-| +------PT TU
| | | | |
| | | | +------PT CR
| | | |
| | | | +------PT OP
| | | | +--68.2-|
| | | +--92.0-| | | +------PT HU
| | | | | | +--99.0-|
| | | | | +--13.0-| +------PT MO
| | | | | | |
| | | | | | | +------PT LA
| | | | | | +------39.5-|
| | | | | | +------PT HF
| | | | +--29.7-|
| | | | | +------PT CH
| | | | | +--96.4-|
| | | | | | | +------PT TA
| | | | | | +--67.8-|
| | | | +--7.90-| +------PT ST
| | +------89.0-| |
| | | | +------PT DA
| | | +------40.0-|
| | | +------PT XE
| | |
+------| | | +------002587250
| | | | +-100.0-|
| | | | +--23.2-| +------002613980
| | | | | |
| | | | +--29.7-| +------001176043
| | | | | |
| | | | | | +------783851
| | | | | +--50.1-|
| | | +------78.0-| | +------788297
| | | | +-100.0-|
| | | | +------001193031
| | | |
| | | +------002740278
| | |
| | | +------F10 HU
| | | +-100.0-|
| | | +--72.5-| +------F10 MO
| | | | |
| | +------66.1-| +------F10 DA
| | |
| | | +------F10 2 LA
| | +------99.0-|
| | +------F10 1 LA
| |
| | +------F9 HU
| +------100.0-|
| +------F9 MO
|
+------F9 DA
remember: this is an unrooted tree!
Sequences in Nexus format:
#NEXUS
BEGIN DATA;
dimensions ntax=58 nchar=300;
format datatype=protein interleave=no gap=-;
matrix
F9_MO
VVGGENAKPGQIPWQVILNGEIEA------FCGGAIINEKWIVTAAHCL--KPGDK------IEVVAGEYNIDKKEDTEQ--RRNVIRTIPHHQYNATI----NKYSHDIALLELDKPLILNSYVTPICVANREYTN--IFLKFGSGYVSGWGKVFNKGRQ------ASILQYLRVPLVDRATCLRSTT------FTIYNNMFCAGYREGGK---DSCEGDSGGPHVTEVEG--TSFLTGIISWGEE-CAMKGKYGIYTKVSRYVNWIKEKTK------
F9_HU
VVGGEDAKPGQFPWQVVLNGKVDA------FCGGSIVNEKWIVTAAHCV--ETGVK------ITVVAGEHNIEETEHTEQ--KRNVIRIIPHHNYNAAI----NKYNHDIALLELDEPLVLNSYVTPICIADKEYTN--IFLKFGSGYVSGWGRVFHKGRS------ALVLQYLRVPLVDRATCLRSTK------FTIYNNMFCAGFHEGGR---DSCQGDSGGPHVTEVEG--TSFLTGIISWGEE-CAMKGKYGIYTKVSRYVNWIKEKTKLT------
F10_MO
IVGGRECKDGECPWQALLINEDNE------GFCGGTILNEFYILTAAHCL--HQARR------FKVRVGDRNTEKEEGNEM--VHEVDVVIKHNKFQR------DTYDYDIAVLRLKTPITFRMNVAPACLPQKDWAE-STLMTQKTGIVSGFGRTHEKGRQ------SNILKMLEVPYVDRNTCKLSTS------FSITQNMFCAGYEAKLE---DACQGDSGGPHVTRFKN--TYYVTGIVSWGEG-CARKGKYGIYTKVTTFLKWIDRSMK------
F10_HU
IVGGQECKDGECPWQALLINEENE------GFCGGTILSEFYILTAAHCL--YQAKR------FKVRVGDRNTEQEEGGEA--VHEVEVVIKHNRFTK------ETYDFDIAVLRLKTPITFRMNVAPACLPERDWAE-STLMTQKTGIVSGFGRTHEKGRQ------STRLKMLEVPYVDRNSCKLSSS------FIITQNMFCAGYDTKQE---DACQGDSGGPHVTRFKD--TYFVTGIVSWGEG-CARKGKYGIYTKVTAFLKWIDRSMK------
F10_DA
IVNGVECPPGDCPWQALLINENNM------GFCGGTILTEHFILSAAHCM--NESLS------IRVVVGEYDTLVPEGREA--THDVDEILIHKNYQP------DTYHNDIALIKLSKPIKFTKYIIPACLPEMKFAE-RVLMQQDDGLVSGFGRVREGGLS------STILQKLTVPYVNRAKCIESSN------FKISGRMFCAGYDQEEK---DACQGDSGGPHVTRFKN--TWFITGVVSWGEG-CARKGKYGVYTQVSKYIMWINNAMT------
F10_1_LA
IAGGEECPLGECPWQVLILDKKGE------GFCGGTILNREWVLTAAHCI--PSEP------DIVIVGEHNRTVSEPTEQ--QISIKQMVMHNRFNN------ATYDNDIALLQMSEPIKFNKYVLPACLPEPDFAD-NVLKEELA-RISGWGYLRERGLK------AKVLQTSFVPYQDMARCKESSS------YTITKNMFCAGYSDSKT---DACQGDSGGPHVTPYAN--TWFSTGIISWGEG-CNRKGKFGIYARVSRYLPWIDTVMK------
F10_2_LA
IAGGMDCPRGDCPWQALVKLENN------LYCGGTILNLEWILTAAHCV--PLKP------WNVVVGEHNLRVTESSEQ--HVPIKNIVVHSRYDP------ITFDNDLALLQLERPLNFSRLVLPACLPERDFAD-KVLVEEQS-RISGWGSLHHRGIK------ATVLQIAEVPFVDTLRCKESSS------SLVTKNMFCAGYSDGTK---DACQHDSGGPHVTIFKD--TWFATGIISWGEG-CARKGKYGVYTRVSRYLLWMHQVMQ------
F9_DA
IVGGDEAIPGEIPWQVVFLEKVNKI------VFCGGSLLSEEWVITAAHCV--EGKQGS------FFIRVGEHDVSKMEGTES--DHGIEEYHIHPRYNSQR----SLYNHDIALLKLKKPVILFDYAVPICLGSKDFTE-NLLQSAENSLVSGWGRLRYGGIE------SNVLQKVELPYVDRIKCKGSST------DSISRFMFCAGYSTVRK---DACQGDSGGPHATRYKD--TWFLTGIVSWGEE-CAKEGKYGIYTRISKYMAWITNITR------
F7_MO
IVGGNVCPKGECPWQAVLKINGLL------LCGAVLLDARWIVTAAHCFDNIRYWGN------ITVVMGEHDFSEKDGDEQ--VRRVTQVIMPDKY--IR----GKINHDIALLRLHRPVTFTDYVVPLCLPEKSFSE-NTLARIRFSRVSGWGQLLDRGAT------ALELMSIEVPRLMTQDCLEHAKH------SSNTPKITENMFCAGYMDGTK---DACKGDSGGPHATHYHG--TWYLTGVVSWGEG-CAAIGHIGVYTRVSQYIDWLVRHMD------
F7_HU
IVGGKVCPKGECPWQVLLLVNGAQ------LCGGTLINTIWVVSAAHCFDKIKNWRN------LIAVLGEHDLSEHDGDEQ--SRRVAQVIIPSTY--VP----GTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSE-RTLAFVRFSLVSGWGQLLDRGAT------ALELMVLNVPRLMTQDCLQQSRK------VGDSPNITEYMFCAGYSDGSK---DSCKGDSGGPHATHYRG--TWYLTGIVSWGQG-CATVGHFGVYTRVSQYIEWLQKLMRSEPRPGV----
F7_DA
IVGGSECPKGHCPWQVLLKYGEKG------FCGGVIYKPTWILTAAHCLEKLKVKF------LRIVAGEHDLEVDEGTEQ--LIQVDQMFTHPAY--VS----ETADSDIALLRLRTPIVYSVYAVPVCLPLREMAE-RELWAVSKHTVSGWGKRSEDGPT------SRLLRRLLVPRIRTQECVQVS------NLTLTSNMFCAGYIEGRQ---DSCKGDSGGPLVTRYRD--TAFLLGIVSWGKG-CARPGSYGIYTRVSNYLQWIRQTTN------
F7_LA
VVGGKECPRGQCPWQVLISRKGAP------VCGGTILSPQWILTAAHCT-IYETKN------LRILAGEHNVDEVEGSEQ--ELGILRIVDHPSFN-IK----LSYDNDISLIQLSRPIQFTRYALPICLPNQRFVR-GVLRSVVAGTVSGWGKLNEFGPA------AGILQRLEVPYVDDEQCRAAMG------SKVITANMFCAGYETGGQ---DSCSGDSGGPHATRYGS--TWFLTGVVSWGKG-CAREGKFGVYTKVLNYLDWIAQTMA------
PT_MO
IVEGWDAEKGIAPWQVMLFRKSPQ------ELLCGASLISDRWVLTAAHCILYP------PWDKNFTENDLLVRIGKHSRTRYERNVE-KISMLEKIYVHPRYNWRENLD-----RDIALLKLKKPVPFSDYIHPVCLPDKQTVT-SLLRAGYKGRVTGWGNLRETWTTNINEIQPSVLQVVN-LPIVERPVCKASTR------IRITDNMFCAGFKVNDTKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEG-CDRKGKYGFYTHVFRLKRWIQKVID------
PT_HU
IVEGSDAEIGMSPWQVMLFRKSPQ------ELLCGASLISDRWVLTAAHCLLYP------PWDKNFTENDLLVRIGKHSRTRYERNIE-KISMLEKIYIHPRYNWRENLD-----RDIALMKLKKPVAFSDYIHPVCLPDRETAA-SLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVN-LPIVERPVCKDSTR------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKVIDQFGE------
PT_OP
IVHGHNVEPGTAPWQVMLFRQRPQ------EMLCGASLISDRWVLTAAHCIFYP------PWDKNYTVQDLLVRIGKHQRAKYERPIE-KIAKLEKVIIHPKYNWKENLD-----RDIALLKLKNPITFSDYIHPICLPSKEMVQ-KLFLSGHKGRVTGWGNLKETWTS-TKENLPEIMQKIS-LPIVEQNLCRASTR------IKITDNMFCAGYPPNVEERGDSCEGDSGGPFVMKNPFDKRWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKAID------
PT_CR
VVKGEDAEVGSAPWQVMLFRKNPQ------ELLCGASLISDRWILTAAHCLFYP------PWDKNFTTDDLLVRIGKHYRAKYERNQE-KIVLLDKIIIHPRYNWKDNLD-----RDIALMHLKKPVTFSNFIHPICLPTKEIVQ-RLMLEGYKGRVSGWGNLFETWSS-TPASLPPVLQQVN-LPIVAQQNCRASTK------IKITDNMFCAGYSAEDTKRGDA------
PT_TU
VVAGEDAEVGSAPWQVMLFRKSPQ------ELLCGASLISDRWVLTAAHCLLYP------PWDKNFTTDDILVRIGKHQRTKYEKNIE-KIALLDKIIIHPKYNWRENLD-----RDIALLLLKKPIVFSDRIHPVCLPTRELVQ-SLMLSGFKGRVSGWGNLYETWSS-GTTALPSVLQQVN-LPIVSQDTCKASTN------IKLTENMFCAGYGPEDPKRGDA------
PT_SN
IVKGVDAEVGSAPWQVMLFKKKPQ------ELVCGASLISNRWVLTAAHCIFYP------PWDKNYTTDDLLVRIGKHNRIRYEQGKE-KIIFLDKIIFHPKYNWMENLD-----RDIALLRLSKPVPFSDYIHPICLPTKQVVQ-SLLLTGYKGRVTGWGNLFDTWGA-GSRQLPSVLQQVN-LPIVNRDICKASTN------IKVTDNMFCAGYSPEESKRGDA------
PT_TA
VVGGDDAEVGSSPWQVMLYKKSPQ------ELLCGASLISDSWILTAAHCLFYP------PWDKNLSTSDILVRIGKHVRAKYEKNKE-KIALLDKIIIHPKYNWKENMD-----RDIALMHLKRPISFSDYIHPVCLPTKEVVQ-RLMLAGYKGRVTGWGNLKETWAT-SPSNLPTVLQQVN-LPIVDQSTCKASTR------VKVTDNMFCAGYSPDALKRGDACEGDSGGPFVMKNPDDNRWYQVGIVSWGEG-CDRDGKYGFYTHVFRLKKWIRKVIE------
PT_ST
VVHGDDAEVGSSPWQVMLYKKSPQ------ELLCGASLISDSWVLTAAHCLYYP------PWDKNLTTNDILVRIGKHFRAKYEKNKE-KIALLDKIIIHPKYNWKENMD-----RDIALMHLKRPVIFSDYIHPVCLPTKEVVQ-RLMLAGYKGRVTGWGNLKETWAT-NPSNLPTVLQQLN-VPIVDQDTCKASTK------VKVTDNMFCAGYSPEDSKRGDACEGDSGGPFVMKSPDDSRWYQVGIVSWGEG-CDRDGKYGFYTHVFRLKKWIRKAIE------
PT_CH
VVHGNDAEVGSAPWQVMLYKKSPQ------ELLCGASLISNSWILTAAHCLLYP------PWDKNLTTNDILVRMGLHFRAKYERNKE-KIVLLDKVIIHPKYNWKENMD-----RDIALLHLKRPVIFSDYIHPVCLPTKELVQ-RLMLAGFKGRVTGWGNLKETWAT-TPENLPTVLQQLN-LPIVDQNTCKASTR------VKVTDNMFCAGYSPEDSKRGDACEGDSGGPFVMKNPDDNRWYQVGIVSWGEG-CDRDGKYGFYTHVFRLKKWMRKTIE------
PT_XE
IVKGETAEPGSAPWQVMLFKKSPQ------ELLCGASLLSDRWVLSAAHCIFYP------PWDKNYTTDDILVRIGKHFRTKYERATE-RIAQLERIIVHPKYNWKENLD-----RDIALIQLKRPVAFSNYIHPVCLPTKDTVV-KLLAAGYKGRVTGWGNLQETWTS-GAQNLPQALQQIN-LPIVDQETCKSSTN------IKVTDNMFCAGYNPEDSKRGDACEGDSGGPFVMKDPDTGRWVQLGIVSWGEG-CDRDNKYGFYVHVHRMRKWIMKTVEKFGS------
PT_DA
IVGGDEAEVASAPWQVMLYKRSPQ------ELLCGASLISDEWILTAAHCILYP------PWNKNFTINDIIVRLGKHSRTKYERGIE-KIVAIDEIIVHPKYNWKENLN-----RDIALLHMKKPVVFTSEIHPVCLPTKSIAK-NLMFAGYKGRVTGWGNLRESWTS-NPSNLPAVLQQIH-LPIVDQSICRNSTS------VIITDNMFCAGYQPDDSKRGDACEGDSGGPFVMKSPSDNRWYQIGIVSWGEG-CDRDGKYGFYTHLFRMRRWMKKVIEKTDSGDDE---
PT_HF
VVHGDNAELGVAPWQVMLYRKRPQ------GMLCGASLISDKWVLTAAHCILYP------PWGKNFSHNDLVVRVGKHFRAAHEKNQEQIAAIKKKIILHPRYDWKENLN-----RDIALILLKRPVHFTKYVAPVCLPESAVAR-KLMRAGYKGRVTGWGNLQEMWSL-SSKVHPRVLQLIN-LPIVDTRTCHDSTT------IKITRNMFCAGYSPEDMKRGDPCEGDSGGPFVMKNPEQNRWYQVGIVSWGEG-CDKDGKYGFYTHLFRMLRWLKKIVN------
PT_LA
VVHGDNAEEGSAPWQVMLYRKSPM------DMLCGASLISDQWVLTAAHCVFYP------PWDKDFTAKELAVRIGKHNKAGYEKDRE-KISNVDKIIIHSKYNWKENME-----RDIALLHLEKPITFTQYIVPICLPTRDVAV-NLLKSGFKGRVTGWGNLFQTWTN-NPRAQPKVLQMIN-LPIVDPSRCQESTT------HRITANMLCAGYEPEDVKRGDACEGDSGGPFIMKDFENKRWYQMGIVSWGEG-CDRDGKYGIYTHVYRLRKWINKVIGEPDT------
001193031
VIGGNTAKNGSAPYMVRIWEYRNEKVVDPWTFICGATLLDQRWILTAAHCMFD------KDKNLIKNENMNLFFGDYDSLFTEESEK--SRQPAEIIVHEDYDKTYFDN-----DIALIRIDPPLWNFTPYIRPICLAPGVLAS-RIMETNINGRVTGWGQTSLKSST------NRLMKEVE-LPIVDRQTCEESITE------GEGRVTENMFCAGYHDA---QHDSCKGDSGGPFAFRHDDG-RWYQLGIVSWGVG-CAAEGEYGFYTSISRYLHWLRSKNV------
788297
VVGGTTANHGSAPFMVRIREKRTDKVVDPWTFICGATLLDQRWILTAAHCMFD------KHENLIRKENMDLFFGDYDSKFTEETEK--SRQPAEMIVHEDFDKTNYDN-----DIALIRIDPPLWEFTPYIRPICLAPGVLAS-SIMETDNNGRVTGWGQESVGSST------SRFMKEVE-LPIVDRQTCEDSIDE------DEGEFTDNMFCAGYDSG---KKDSCEGDSGGPFAFRHDDG-RWYQLGIVSWGVG-CAKVGEYGFYTSVSRYLHWLRSKNV------
783851
VVGGQQSLPGSAPYMGRIWHKADR------TFVCGATLLNQRWVITAAHCIVL------YQLQFR---DILLYFGDHDTLTSEDHQV--IAEVDQIIQHEDFDEESFDK-----DIALIRLKQPFAEFTDYIRPICIPPAWLAK-MLLQPDMMGRVTGWGQIAEGGPY------PRYLTEVD-LPVVKSKKCKDATT------FEVTRYMFCAGYASAEE-KKDACQGDSGGPFAMLHEN--RWYQLGIVSWGEG-CARDSKYGYYTKILRLHSWIDRNISD------
002740278
IVGGETSRKGSAPWMARLWDNRKS------KHFCGGSVLNNWWVVTAAHCITK------QGVDAS---TLFIRLGDYDDVELENEEI--LHEVDEIIVHPDYRGSTFDS-----DIALIRLAN-KVTFTDHILPVCLPPREVAM-SMLKKGTMGRVLGWGSIREGGTY------PRYLKEVE-LPVRRIGECRKSTR------FSVTTNMFCAGYKLEM--RGDSCKGDSGGPMVQRSTEN-KWQLVGIVSWGEG-CAERDKFGFYTKVYKFNQWI------
001176043
ISTGMRAPRGAAPWMAQLWNVQSG------RMFCAGSIINEYWIITAAHCVEVGLSFCISP-FFAQSHSASTLKIQLGDYDRLMPETHQR--AYDVAEIVVHEGS-QVQLDH-----DIALIKLSE-RIEFNNYVRPICFPTTKLAK-SFLKSGSYGSVAGWGRKGDNMDY------PRYLNQVF-VPVVERKTCRRATD------YDFTSNMFCAGFREAN--RGDACEGDSGAPFSMQHANG-RWYILGTVSWGDA-CDDQDKYGYYTRLHRYTSWIKRHTR------
002587250
IVGGTEVEPGAFPWQAMLWDIRPTRN----RYFCSGSLINKRWVITAAHCIRELGVT------EQDFIVRLGKHTSVRG----VLEANER--SYIVERIIVHPDFNGDTYES-----DVALLQLALPEVTFTEYILPICLPEIPEAR-RLIRPGNIGTVTGWGAQAVGGRT------SEKLMKVVSLPVVSLRRCRDSHPQ------YAQEISQNMFCAGRREGG---KDACEGDSGGPFAAFDNG--RWHLLGVVSWGDG-CALRGKYGVYTRLHRFRDWITEQTEEQ------
002613980
IIDGDRVLQHRGDLVFTAVSLTDSGR----YTCTARSGEGDRSIQAHAVLNVDIDVNNV---CDMDLIPVCGRPFHAHGPDGFVVGGTEA--SHMVEEIIVHPNFNGETYES-----DIALLKLSGPEVTFTEHILPICLPEVLDAR-RLVRSGQIGTVTGWGAMEDGGPY------STTLMRVS-LPVVSLQRCRRAHPQ------FAEDISQNMFCAGRASGG---RDTCKGDSGGPFASYDNG--RWVLLGIVSWGDG-CVLQGKYGVYTRVHRFREWIVTHIE------
TPSB2
IVGGQEAPRSKWPWQVSLRVRDRYW-----MHFCGGSLIHPQWVLTAAHCVGPDVKD------LAALRVQLREQHLYY--QD---QLLPVSRIIVHP-QFYT-----AQIGADIALLELEEPVNVSSHVHTVTLPPASE----TFPPG------
TPSG1
IVGGHAAPAGAWPWQASLRLRR------VHVCGGSLLSPQWVLTAAHCFS-GSLN------SSDYQVHLGELEITL--SP---HFSTVRQIILHSSPSGQ-----PGTSGDIALVELSVPVTLSSRILPVCLPEASD----DFCPGIRCWVTGWGYTREGEPLP----PPYSLREVK-VSVVDTETCRRDYP--GPGGS-----ILQPDMLCA---RGPG---DACQDDSGGPLVCQVN--GAWVQAGTVSWGEG-CGRPNRPGVYTRVPAYVNWIRRHIT------
PRSS22
VVGGEDSTDSEWPWIVSIQKNG------THHCAGSLLTSRWVITAAHCFKDNLNK------PYLFSVLLGAWQLGN--PGSRSQKVGVAWVEPHPVYSWK-----EGACADIALVRLERSIQFSERVLPICLPDASI----HLPPNTHCWISGWGSIQDGVPLP----HPQTLQKLK-VPIIDSEVCSHLYW--RGAGQ----GPITEDMLCAGYLEGER---DACLGDSGGPLMCQVD--GAWLLAGIISWGEG-CAERNRPGVYISLSAHRSWVEKIVQ------
PRSS33
IVGGRDGRDGEWPWQASIQHRG------AHVCGGSLIAPQWVLTAAHCFPR-RAL------PAEYRVRLGALRLGS--TSPRTLSVPVRRVLLPPDYSE------DGARGDLALLQLRRPVPLSARVQPVCLPVPGA----RPPPGTPCRVTGWGSLRPGVPLP----EWRPLQGVR-VPLLDSRTCDGLYH--VGADVPQAERIVLPGSLCAGYPQGHK---DACQGDSGGPLTCLQS--GSWVLVGVVSWGKG-CALPNRPGVYTSVATYSPWIQARVS------
TSP50
TLRDPEAVARRWPWMVSVRANG------THICAGTIIASQWVLTVAHCLIWRDVI------YS---VRVGSPWIDQ--MTQTASDVPVLQVIMHSRYRAQRFWSWVGQANDIGLLKLKQELKYSNYVRPICLPGTDY----VLKDHSRCTVTGWGLSKADGMWP----QFRTIQEKE-VIILNNKECDNFYH--NFTKIPTLVQIIKSQMMCAED-THRE---KFCYELTGEPLVCSME--GTWYLVGLVSWGAG-CQKSEAPPIYLQVSSYQHWIWDCLN------
002596007
IVGGTVAAPGSWPWQVSLGYGSNG------QHVCGATLIAPDWVLSAAHCFAQLSTN------PGSFVVKVGKHNKAS--TDSTEQSMQVAQIIVHPRYQQE-----GQNTNDIALLKLVGRVQLNDYVMQACITETEA------PEGAMCVATGFGNTEGTGGD------NYLKQVQ-LPLLSNTQCR------SWLG--SVIQSSMVCAGYESGGS---DTCQGDSGGPLTCPRL--GKWFVSGVTSFGQG-CADPRKPGVYTRVGYYIDWILKYTA------
ACE86411
IVGGSVATPGSWPWQVSLGYGSNG------QHVCGATLIAPEWVLSAAHCFAQLSTN------PGSFIVKVGKHNKAS--TDSTEQRMQVAQIIVHPRYQQD-----GQNTNDIALLKLTQRVQLNDYVSQACITETEA------PEGAICVATGFGNTEGTGGD------NYLKQVQ-LPSLSNAQCR------SWLG--SVIKSTMVCAGYEGGGS---DTCQGDSGGPLTCPRL--GQWFVSGVTSFGQG-CADPRKPGVYTRVGYYIDWILKYTA------
002596012
VVGGEAAVPGSWPWQASLMTS------YHFCGGSLIHPEWILTAAHCFADDPT------PSRYTVVLGKHFSDG--SSTSQEEYSVSKVIVHEEYDDN-----ALN-KDLTLLKLSRPAVLGQYIQTVCLPQSASD---DPPAGTTCVTTGYGDTQGTGND------DVLKQAR-VPLVSNADCN------VASSYDGEITEFMMCAGFQEGGA---DACQGDSGGPLVCPKQ--GQWYLNGVVSWGYG-CAQPNYPGVYARVSSMLDWVGQKMA------
HGF_HU
VVNGIPTRTNIG-WMVSLRYRN------KHICGGSLIKESWVLTARQCFP-SRD------LKDYEAWLGIHDVHGRGDEKCKQVLNVSQLVYGPEG------SDLVLMKLARPAVLDDFVSTIDLPNYGC----TIPEKTSCSVYGWGYTGLINYD------GLLRVAH-LYIMGNEKCS------QHHRGKVTLNESEICAGAEKIGS---GPCEGDYGGPLVCEQH--KMRMVLGVIVPGRG-CAIPNRPGIFVRVAYYAKWIHKIILTYKVPQS----
PLG_HU
VVGGCVAHPHSWPWQVSLRTRFG------MHFCGGTLISPEWVLTAAHCLEKSPR------PSSYKVILGAHQEVN--LEPHVQEIEVSRLFLEPTR------KDIALLKLSSPAVITDKVIPACLPSPNY----VVADRTECFITGWGETQGTFGA------GLLKEAQ-LPVIENKVCN------RYEFLNGRVQSTELCAGHLAGGT---DSCQGDSGGPLVCFEK--DKYILQGVTSWGLG-CARPNKPGVYVRVSRFVTWIEGVMRNN------
AAO12215
IVGGDPVNKGDVPWQVSLQREGFFGR----SHFCGGSILDADTVLTAAHCTDGQVP------SGITVVAGDHV-LSTTDGD-EQVVGVASISEHPEYNSRTF------YNDICVLKLLNSIIIGGNVQPVGLPFPNA----EVDEGVMATVSGWG-TTSAGGS-----LSDVLLAVN-VPVISDAECRGAY------GETDVADSMICAGDLANGGI---DSCQGDSGGPLYMGS------TIIGIVSWGYG-CAYAGYPGVYTQVSYYVSFIKSV------
sca_542_BR
IVGGSVVEEHSYPWQVYLNCDGFL------CGGALLNELWVITAAHCIT-KDP------SDISVKLGDHN-IFYESGQ-EEKFGVEQDFPHPQYDYDKFPI---HDNDIALLKLKRPASFNKFIMPICLPDATF----AVDAGTDLTVTGWG-TTSESGD-----VSDDLQEVV-VSVYSDADCVKAL------GSSVNPSTMICAGYPE-GGK---DSCQGDSGGPLMYFTPNEGPAVLVGIVSWGSG-CAREGKPGVYARVTTYLDWIQETM------
TR1_HU
IVGGYNCEENSVPYQVSLN----SGY-----HFCGGSLINEQWVVSAGHCYKSR------IQVRLGEHN-IEVLEGN-EQFINAAKIIRHPQYDRKTLN------NDIMLIKLSSRAVINARVSTISLPTA------PPATGTKCLISGWGNTASSGAD-----YPDELQCLD-APVLSQAKCEAS------YPGKITSNMFCVGFLEGGK---DSCQGDSGGPVVCNG------QLQGVVSWGDG-CAQKNKPGVYTKVYNYVKWIKNTIAANS------
TR2_HU
IVGGYICEENSVPYQVSLN----SGY-----HFCGGSLISEQWVVSAGHCYKSR------IQVRLGEHN-IEVLEGN-EQFINAAKIIRHPKYNSRTLD------NDILLIKLSSPAVINSRVSAISLPTA------PPAAGTESLISGWGNTLSSGAD-----YPDELQCLD-APVLSQAECEAS------YPGKITNNMFCVGFLEGGK---DSCQGDSGGPVVSNG------ELQGIVSWGYG-CAQKNRPGVYTKVYNYVDWIKDTIAANS------
TR3_HU
IVGGYTCEENSLPYQVSLN----SGS-----HFCGGSLISEQWVVSAAHCYKTR------IQVRLGEHN-IKVLEGN-EQFINAAKIIRHPKYNRDTLD------NDIMLIKLSSPAVINARVSTISLPTT------PPAAGTECLISGWGNTLSFGAD-----YPDELKCLD-APVLTQAECKAS------YPGKITNSMFCVGFLEGGK---DSCQRDSGGPVVCNG------QLQGVVSWGHG-CAWKNRPGVYTKVYNYVDWIKDTIAANS------
TR5_MO
IVGGYTCPKHSVPYQVSLN----DGI----SHQCGGSLINDQWVLSAAHCYKR------LQVRLGEHN-IDVLEGG-EQFIDAEKIIRHPDYNKDTVD------NDIMLIKLKSPAILNSQVSTVSLPRS------CASTNAQCLVSGWGNTVSIGGK-----YPALLQCLE-APVLSASSCKKS------YPGQITSNMFCLGFLEGGK---DSCDGDSGGPVVCNG------EIQGIVSWGSV-CAMRGKPGVYTKVCNYLSWIQETMANN------
002589500
IIGGFEATPGSVPWQVSLQ----RSG----SHFCGGTLLNSQWVLSAAHCLVSG------MTVVAGEHD-LSRNDGH-EQSRGVERIIPHPNYNDNTLD------NDIMLIKLSSPVTISSWVSPASLPDS------MVSAGTNVIVTGWGNTGSN------YPDKLQKVR-VPVISRATCNGAN------AYAGAVTTNMFCAGYMDGGK---DSCQGDSGGPVTRSG------TVYGVVSWGYG-CAQPNYPGVYTKVKKYTSWINVYIN------
002589891
IVGGNEAAPGSYPWQASLRQYGYSGG----FHVCGGALLSNRWVVTAAHCIVNG------LQWVVLGDHD-RRKSTKA-KQTVKIQRVFKHPHYNDDTLV------NDIALLKLQSAVS----VQPVCLPDPAK----EDPAGTVVAVTGWG-TVSEGGH-----TSSVLLQAN-MPLVDDSYCVDVYNIIADALYGFDTKVDPKIMMCTGYREGGV---DTCQGDSGGPVVVFPP-KGQAYLAGVISWGYG-CGREFIPGVNVRVSAYVDWIRHIIDSN------
sca_384_BR
IVGGNIAAPGSYPWQVGLLNVHAVR------PFCGGALLSENWVVTVAQCIGDP------TFLVVVGEHD-VNNSPEW-KETVEVKQIIVHPDYSDVTLD------NNIALVKLESPVSLNDYVQPICLPKRDF----KP-EGKVVTVAGWG-HTSEGGA-----PSPVLLQAE-VPVLTAAECYASY------VTNWIIAKSMICTGYAAGGV---DTCQGDSGGPVVLFPS-EGPAYVVGLVSWGIG-CASPGYPGVSTRVSTYVDWI------
001633098
IVGGAAANPGDWPWQAQLR---TTTG----FPYCGGSLIHSNWVLTAAHCISSKRP------AEVVVRLGAHSRLGSLTTD-MQDIKVSAIITHSNYNSRTMY------NDIALLKLATPAQTNSKVGFVCLPETEA----SPSDGTTCWITGWG-TLSSGGS-----PPDILQEAS-VPVVSRARCEQAYT------DPNQIHDSMLCAGLDNGGV---DTCQGDSGGPLVCESG--GKFVLHGATSWGYG-CAAKGKFGVYANVKYLLTWVKTQMA------
MASP1_HU
IFNGRPAQKGTTPWIAMLSHLN---G----QPFCGGSLLGSSWIVTAAHCLHQSLDPEDPTLRDSDLLSPSDFKIILGKHWRLRSDENE--QHLGVKHTTLHPQYDPNTFE------NDVALVELLESPVLNAFVMPICLPEGPQ------QEGAMVIVSGWG--KQFLQR-----FPETLMEIE-IPIVDHSTCQKAYAP------LKKKVTRDMICAGEKEGGK---DACAGDSGGPMVTLNRERGQWYLVGTVSWGDD-CGKKDRYGVYSYIHHNKDWIQRVTGVRN------
TPS11B_HU
IVNGKSSLEGAWPWQASMQWK----G----RHYCGASLISSRWLLSAAHCFAKKNNSKDWTVN------FGVVVNKPYMTRKVQN------IIFHENYSSPGLH------DDIALVQLAEEVSFTEYIRKICLPEAKMK----LSENDNVVVTGWG--TLYMNGS----FPVILQEDF-LKIIDNKICNASYA------YSGFVTDTMLCAGFMSGEA---DACQNDSGGPLAYPD-SRNIWHLVGIVSWGDG-CGKKNKPGVYTRVTSYRNWITSKTGL------
PC_HU
LIDGKMTRRGDSPWQVVLLDSKKK------LACGAVLIHPSWVLTAAHCMDESKK------LLVRLGEYDLRRWEKWE--LDLDIKEVFVHPNYSKSTTDN------DIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNR--TFVLNFIKIPVVPHNECSEVMSN------MVSENMLCAGILGDRQ---DACEGDSGGPMVASFHG--TWFLVGLVSWGEG-CGLLHNYGVYTKVSRYLDWIHGHIRDKEAPQKSWAP
PC_DA
VMGGNVGKRGESPWQALILNHLGR------FHCGGVLIDENWVLTAAHCLETSSK------FSVRLGDYQRFKFEGSE--VTLPVKQHISHPQYNPITVDN------DIALLRLDGPVKFSTYILPACLPSLELAKRMLHRNGTVTIITGWGKNN----QSATSY--NSTLHYVELPIVDNKECSRHMMN------NLSDNMLCAGVLGQVK---DACEGDSGGPMMTLFHD--TWFLVGLVSWGEG-CGQRDKLGIYTKVASYLDWIDSVRQ------
MASP2_HU
IYGGQKAKPGDFPWQVLILGG------TTAAGALLYDNWVLTAAHAVYEQKHDAS------ALDIRMGTLKRLSPHYTQA----WSEAVFIHEGYTHDAGFD-----NDIALIKLNNKVVINSNITPICLPRKEAES--FMRTDDIGTASGWGLTQRGFLAR------NLMYVDIPIVDHQKCTAAYEK-----PPYPRGSVTANMLCAGLESGGK---DSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIISDF------
PZ_HU
TSEKRAPDLQDLPWQVKLTNSEGK------DFCGGVIIRENFVLTTAKCS------LLHRNITVKTYFNRTSQDPLMIKITHVHVHMRYDADAGEN------DLSLLELEWPIQCPGAGLPVCTPEKDFAE-HLLIPRTRGLLSGWARNGTDLGN------SLTTRPVTLVEGEECGQVLN------VTVTTRTYCERSSVAAM------HWMDGSVVTREHRGSWFLTGVL--GSQPVGGQAHMVLVTKVSRYSLWFKQIMN------
;
end;
Mrbayesgenerated consensus phylogenetic tree:
#NEXUS
[ID: 1750154717]
begin trees;
[Note: This tree contains information on the topology,
branch lengths (if present), and the probability
of the partition indicated by the branch.]
tree con_50_majrule = (F9_MO:0.112340,F9_HU:0.070980,(((((F10_MO:0.073761,F10_HU:0.054507)1.00:0.295118,F10_DA:0.286789)1.00:0.132339,((F10_1_LA:0.241003,F10_2_LA:0.267652)1.00:0.166403,(((F7_MO:0.243119,F7_HU:0.136159)1.00:0.426701,F7_DA:0.377974)0.72:0.104255,F7_LA:0.394607)1.00:0.146345)0.62:0.079988)0.97:0.096646,(((((((((PT_MO:0.067720,PT_HU:0.063738)1.00:0.131313,PT_OP:0.166580)1.00:0.072533,(PT_CR:0.135602,(PT_TU:0.130526,(PT_SN:0.170173,PT_XE:0.173131)0.63:0.034577)0.60:0.037897)0.68:0.032804)0.74:0.028023,((PT_TA:0.050186,PT_ST:0.035314)0.73:0.016980,PT_CH:0.062173)1.00:0.069208)0.99:0.076861,PT_DA:0.176867)0.71:0.069804,PT_HF:0.253916,PT_LA:0.248615)1.00:0.436702,(((((001193031:0.103291,788297:0.096845)1.00:0.439330,783851:0.288762)1.00:0.192467,001176043:0.541067)0.99:0.119895,002740278:0.389881)0.95:0.109670,(002587250:0.151226,002613980:0.523690)1.00:0.430101)1.00:0.209999)0.99:0.132749,(((((TPSB2:0.510638,TPSG1:0.360369)0.84:0.128930,(PRSS22:0.489796,PRSS33:0.420608)0.97:0.124166)1.00:0.171072,(TSP50:0.829342,TPS11B_HU:0.517750)0.71:0.107339)0.87:0.144461,((((002596007:0.050742,ACE86411:0.027739)1.00:0.412621,002596012:0.365545,(HGF_HU:0.845540,PLG_HU:0.404916)0.97:0.156813)0.61:0.112446,001633098:0.487583)0.54:0.112308,((AAO12215:0.466325,sca_542_BR:0.426162)0.91:0.134307,(002589891:0.356606,sca_384_BR:0.356219)1.00:0.166901)1.00:0.186009,(((TR1_HU:0.057633,(TR2_HU:0.048322,TR3_HU:0.068865)0.89:0.030564)1.00:0.108288,TR5_MO:0.233925)1.00:0.271150,002589500:0.293227)1.00:0.154324)1.00:0.153127)0.87:0.147669,MASP1_HU:0.610646)0.96:0.132041)0.98:0.152647,((PC_HU:0.469920,PC_DA:0.345445)1.00:0.200800,(MASP2_HU:0.710062,PZ_HU:1.091248)0.58:0.109298)0.90:0.144007)0.98:0.139122)0.94:0.108520,F9_DA:0.366335)1.00:0.428415);
[Note: This tree contains information only on the topology
and branch lengths (mean of the posterior probability density).]
tree con_50_majrule = (F9_MO:0.112340,F9_HU:0.070980,(((((F10_MO:0.073761,F10_HU:0.054507):0.295118,F10_DA:0.286789):0.132339,((F10_1_LA:0.241003,F10_2_LA:0.267652):0.166403,(((F7_MO:0.243119,F7_HU:0.136159):0.426701,F7_DA:0.377974):0.104255,F7_LA:0.394607):0.146345):0.079988):0.096646,(((((((((PT_MO:0.067720,PT_HU:0.063738):0.131313,PT_OP:0.166580):0.072533,(PT_CR:0.135602,(PT_TU:0.130526,(PT_SN:0.170173,PT_XE:0.173131):0.034577):0.037897):0.032804):0.028023,((PT_TA:0.050186,PT_ST:0.035314):0.016980,PT_CH:0.062173):0.069208):0.076861,PT_DA:0.176867):0.069804,PT_HF:0.253916,PT_LA:0.248615):0.436702,(((((001193031:0.103291,788297:0.096845):0.439330,783851:0.288762):0.192467,001176043:0.541067):0.119895,002740278:0.389881):0.109670,(002587250:0.151226,002613980:0.523690):0.430101):0.209999):0.132749,(((((TPSB2:0.510638,TPSG1:0.360369):0.128930,(PRSS22:0.489796,PRSS33:0.420608):0.124166):0.171072,(TSP50:0.829342,TPS11B_HU:0.517750):0.107339):0.144461,((((002596007:0.050742,ACE86411:0.027739):0.412621,002596012:0.365545,(HGF_HU:0.845540,PLG_HU:0.404916):0.156813):0.112446,001633098:0.487583):0.112308,((AAO12215:0.466325,sca_542_BR:0.426162):0.134307,(002589891:0.356606,sca_384_BR:0.356219):0.166901):0.186009,(((TR1_HU:0.057633,(TR2_HU:0.048322,TR3_HU:0.068865):0.030564):0.108288,TR5_MO:0.233925):0.271150,002589500:0.293227):0.154324):0.153127):0.147669,MASP1_HU:0.610646):0.132041):0.152647,((PC_HU:0.469920,PC_DA:0.345445):0.200800,(MASP2_HU:0.710062,PZ_HU:1.091248):0.109298):0.144007):0.139122):0.108520,F9_DA:0.366335):0.428415);
end;
Mrbayes output:
2000000 -- (-21627.637) [-21552.557] (-21568.756) (-21579.292) * (-21573.593) (-21590.784) (-21582.695) [-21564.023] -- 0:00:00
Average standard deviation of split frequencies: 0.009470
Continue with analysis? (yes/no): no
Analysis completed in 57630 seconds
Analysis used 57629.28 seconds of CPU time
Likelihood of best state for "cold" chain of run 1 was -21538.41
Likelihood of best state for "cold" chain of run 2 was -21542.00
Acceptance rates for the moves in the "cold" chain of run 1:
With prob. Chain accepted changes to
8.31 % param. 2 (topology and branch lengths) with extending TBR
19.43 % param. 2 (topology and branch lengths) with LOCAL
Acceptance rates for the moves in the "cold" chain of run 2:
With prob. Chain accepted changes to
8.34 % param. 2 (topology and branch lengths) with extending TBR
19.53 % param. 2 (topology and branch lengths) with LOCAL
Chain swap information for run 1:
1 2 3 4
------
1 | 0.28 0.05 0.00
2 | 333326 0.34 0.08
3 | 333077 334002 0.42
4 | 333676 334076 331843
Chain swap information for run 2:
1 2 3 4
------
1 | 0.27 0.04 0.00
2 | 333330 0.35 0.08
3 | 332664 333458 0.41
4 | 333532 333516 333500
Upper diagonal: Proportion of successful state exchanges between chains
Lower diagonal: Number of attempted state exchanges between chains
Chain information:
ID -- Heat
------
1 -- 1.00 (cold chain)
2 -- 0.83
3 -- 0.71
4 -- 0.63
Heat = 1 / (1 + T * (ID - 1))
(where T = 0.20 is the temperature and ID is the chain number)
Bayes > sump burnin=250
Setting sump burnin to 250
Summarizing parameters in files ProtserTreeSeq.nex.run1.p and ProtserTreeSeq.nex.run2.p
Writing output to screen but not to file ('Printtofile = No')
DOS line termination
Longest line length = 26
Found 20001 parameter lines in file "ProtserTreeSeq.nex.run1.p"
Of the 20001 lines, 19751 of them will be summarized (starting at line 253)
(Only the last set of lines will be read, in case multiple
parameter blocks are present in the same file.)
19751 rows and 3 columns in each row
Expecting the same layout in all subsequent files
Successfully read 19751 lines from last parameter block of file 1
Successfully read 19751 lines from last parameter block of file 2
Below are rough plots of the generation (x-axis) versus the log
probability of observing the data (y-axis). You can use these
graphs to determine what the burn in for your analysis should be.
When the log probability starts to plateau you may be at station-
arity. Sample trees and parameters after the log probability
plateaus. Of course, this is not a guarantee that you are at sta-
tionarity. Also examine the convergence diagnostics provided by
the 'sump' and 'sumt' commands for all the parameters in your
model. Remember that the burn in is the number of samples to dis-
card. There are a total of ngen / samplefreq samples taken during
a MCMC analysis.
Overlay plot for both runs:
(1 = Run number 1; 2 = Run number 2; * = Both runs)
+------+ -21562.49
| 1 |
| 2 |
| 1 1 22 1 |
| 2 21 1 1 1 1 2 2 1|
|1 12 1 1 2 1 11 1 2 2 22 2 11 |
|2 2 * 2 2 21 2 2 1 |
| 2 22 21 2 2 112 1 12|
| 2 1 2 1 1 2 11 1 2 12 * |
| 11 2 2 221 12 22 11 1 2212 1 |
| 1 1 2 1 2 1 111 2 21 2 1 1 2 |
| 2 1 2 211 2 |
| 2 |
| 2 2 |
| 2 1 |
| 1 |
+------+-----+-----+-----+-----+-----+-----+-----+-----+-----+ -21572.31
^ ^
25000 2000000
Estimated marginal likelihoods for runs sampled in files
"ProtserTreeSeq.nex.run1.p" and "ProtserTreeSeq.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
Run Arithmetic mean Harmonic mean
------
1 -21548.78 -21595.19
2 -21547.81 -21595.80
------
TOTAL -21548.18 -21595.54
------
Model parameter summaries over the runs sampled in files
"ProtserTreeSeq.nex.run1.p" and "ProtserTreeSeq.nex.run2.p":
(Summaries are based on a total of 39502 samples from 2 runs)
(Each run produced 20001 samples of which 19751 samples were included)
95% Cred. Interval
------
Parameter Mean Variance Lower Upper Median PSRF *
------
TL 25.713196 0.170788 24.909000 26.524000 25.712000 1.000
------
* Convergence diagnostic (PSRF = Potential scale reduction factor [Gelman
and Rubin, 1992], uncorrected) should approach 1 as runs converge. The
values may be unreliable if you have a small number of samples. PSRF should
only be used as a rough guide to convergence since all the assumptions
that allow one to interpret it as a scale reduction factor are not met in
the phylogenetic context.
Bayes > sumt burnin=250
Setting sumt burnin to 250
Summarizing trees in files "ProtserTreeSeq.nex.run1.t" and "ProtserTreeSeq.nex.run2.t"
DOS line termination
Examining first file ...
Found one tree block in file "ProtserTreeSeq.nex.run1.t" with 20001 trees in last block
Expecting the same number of trees in the last tree block of all files
Tree reading status:
0 10 20 30 40 50 60 70 80 90 100
v------v------v------v------v------v------v------v------v------v------v
*********************************************************************************
Read a total of 40002 trees in 2 files (sampling 39502 of them)