Supplementary Table 1Characteristics of the 209 new single nucleotide polymorphisms fromPacific oyster Crassostrea gigas
SNP name / Accession no. / Primer sequences (5'-3') / Amplicon length (bp) / SNP type and location / Type / Annotation
CgSNP235 / FP003992 / F:GGTGGAATAAAAGCAGGAAGAG / 103 / A/C(136) / S(Ala) / hypothetical protein CGI_10007188
R:CTACCATCAGAAACACAGCAATAAG
CgSNP236 / HS247607 / F:ACCACCACCGCTACCTTACCG / 82 / A/C(107) / N(Pro-Thr) / hypothetical protein CGI_10002462
R:CCGTTGTCTGAGTTGTCGTTGATG
CgSNP237 / AM856727 / F:AAATGATGTTCCTGAAACTTCTGC / 77 / C/T(642) / S(Phe) / Unknown
R:GTTAGGTAAAATAAGCCCTTGGTC
CgSNP241 / HS119954 / F:CCATTTACACTGGTATTACTTTGTCTG / 81 / C/T(479) / S(Tyr) / V-type proton ATPase catalytic subunit A
R:GAGAAGTGGAGTCAGCCATCAT
CgSNP242 / CU993900 / F:GCTCAGAGTGAGAACAAGATTACCT / 91 / C/T(5) / S(Arg) / V-type proton ATPase catalytic subunit A
R:GGTCCTTGAACTTCATACTGCTG
CgSNP249 / HS204652 / F:CACACTAGAAGGTGAAATTGTAGAATCT / 95 / C/T(532) / N(Met-Thr) / Unknown
R:CATTACTCGTTGATACTGAATCCTGT
CgSNP252 / CU997098 / F:AGGAAGAAAGGGATGGAGCAG / 56 / G/T(426) / N(His-Gln) / Zinc finger SWIM domain-containing protein 6
R:ATTTAATTGGATTATCGCATCACTG
CgSNP254 / CU995821 / F:CAACTCTCGCCAAACTTCACAG / 82 / A/C(70) / S(Arg) / Unknown
R:GAGATGAACCCTCTAAATTCTGGAC
CgSNP257 / CU988168 / F:CAGTTTTGGATGATGGGTTGAAG / 69 / C/T(160) / N(Val-Ala) / Ester hydrolase C11orf54-like protein
R:AATCAGGGCAATCCACAACAG
CgSNP261 / AM854147 / F:TCCACACTCCGTAGACTCCAGC / 99 / A/G(376) / S(Ala) / Myotubularin-related protein 14
R:GCATCCAACTTTGAATGTCTTGTAG
CgSNP264 / FP003042 / F:TACAGACAACCAATCATTAAAGCAG / 67 / A/C(715) / S(Val) / Protein hu-li tai shao
R:GTGGGATTTCTACATCATCATTACAT
CgSNP265 / HS138497 / F:GCGTGGATATTGATTTGGATGAC / 71 / C/T(599) / S(Val) / Sperm surface protein Sp17
R:ACCTTTGAACCCTGCCTGGAT
CgSNP272 / CU997831 / F:TCAGCAACACCTTTGACAATCTT / 80 / G/T(231) / N(Ser-Ala) / Transforming growth factor-beta-induced protein ig-h3
R:CTCAGTTGGTCCAGGACACTCT
CgSNP273 / HS243031 / F:CAGCCTGAGATAGACAATGGAAG / 75 / A/G(401) / S(Val) / UPF0686 protein C11orf1-like protein
R:TACATAGGAGGAGCGTGTGGTG
CgSNP276 / CU682714 / F:TTCTTCAAGCAGCCGTCAGTAGT / 67 / A/G(218) / N(Phe-Ser) / Collagen alpha-6(VI) chain
R:ACGACCACCACGCATCCG
CgSNP278 / HS245589 / F:ATCATTGTCCACCCCAACTCG / 85 / A/G(129) / S(Lys) / Cell division cycle and apoptosis regulator protein 1
R:GCCTGTAGTCAAGTAGAACACTGAGG
CgSNP280 / HS136420 / F:GGAGCAGCCAGCTAAGGTAGAC / 77 / A/G(385) / S(Pro) / F-actin-capping protein subunit alpha
R:CTCGGTAGGCAGTGAGAGACG
CgSNP283 / FQ665717 / F:GGGTGAGTTTGGAGTGTACCTG / 66 / A/G(525) / S(Ser) / NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial
R:GCCTTGATTTTACACCTGTATGG
CgSNP285 / HS117955 / F:CAGGATCAAACGGTAGGAACACT / 75 / A/G(385) / S(Gln) / Radial spoke head protein 4-like protein A
R:GGTCACAGAGGTCACGCAGG
CgSNP287 / FP004513 / F:CTGTCTGTACCCAGGGCTGTAAT / 71 / C/T(449) / S(Val) / Deleted in malignant brain tumors 1 protein
R:GGACTGACAGTTCCTGTATATGGTGT
CgSNP291 / HS209601 / F:CGTTTGTCAGTTTACAGGTAACATT / 104 / C/T(455) / N(Ser-Lys) / Unknown
R:TATTCATGGCTTTGCTGTATTGTAT
CgSNP297 / HS242068 / F:CTCAAACAGCATAACACAGACAATAG / 88 / A/G(570) / UTR / Unknown
R:TAAATAAATCGGTCCTTGGCAT
CgSNP301 / BQ427127 / F:CTCTCAATGGGAGCCTCTCAG / 88 / C/T(287) / S(Ile) / hypothetical protein CGI_10026551
R:ACCCTGGTTGTACTCTCCGACT
CgSNP305 / HS154509 / F:GGATCTTAATTCAGAACAGACTCAGT / 111 / A/G(87) / S(Tyr) / Unknown
R:GACCATGTGGCTACAACAATACC
CgSNP306 / HS157322 / F:CGACCTATTATGATTCTAGCCTTG / 99 / C/T(487) / S(Ile) / hypothetical protein CGI_10022027
R:GTCCTCTATTGCTCGTTTGATGT
CgSNP307 / HS110370 / F:TCTACAGGAGGAATCTGAGGAACC / 80 / A/G(328) / S(Leu) / Unknown
R:ACAGAGTGTGTGCTCATGGACC
CgSNP309 / HS234368 / F:CTGATGCCACCCTGGAGTTC / 95 / C/T(423) / S(Asn) / Collagen alpha-5(VI) chain
R:TGTGTCCCCAGTTGTAAAGTTGAG
CgSNP311 / HS209316 / F:CCACAAGCTCTCCGAGTCACAG / 106 / C/T(455) / S(Asn) / Nuclear factor erythroid 2-related factor 2
R:AATTACGTCCATTTTGCGTTTCC
CgSNP312 / HS209316 / F:GGGACATGAAAGATAAGTACAGCG / 108 / C/T(644) / S(Asp) / Nuclear factor erythroid 2-related factor 2
R:TGGACTGTTGTAGAGAGAACTGAGC
CgSNP316 / FQ668919 / F:TGAGGCAACAGTTGGCAGATT / 104 / A/C(535) / S(Thr) / hypothetical protein CGI_10009681
R:CCTCTCCCAGCTCTTGACTTTC
CgSNP319 / HS122639 / F:GAAGCCAGAACCAGAGAGCG / 76 / G/T(105) / S(Pro) / Unknown
R:CTTGAGTTTTCAATCCTGTTAGTCG
CgSNP321 / HS187344 / F:CTTCATCGTGAATGCTGACAATG / 74 / A/G(198) / S(Gln) / 60S acidic ribosomal protein P0
R:TAGCTTTTCCTCGCAGTGCC
CgSNP322 / HS247463 / F:ATGGTAGCTGGATATGGCGAC / 76 / A/T(99) / S(Ala) / Adenosylhomocysteinase A
R:TAATCATTACTCTAGCTCCAAAGGC
CgSNP323 / HS243862 / F:GTCGAAAGATCCGTCGTTGTC / 104 / A/T(404) / S(Ser-Cys) / hypothetical protein CGI_10008723
R:GCCTCTTGCCATCTCATACATAGT
CgSNP326 / FQ660816 / F:CCACTGTTAGCTCCTGTCTGACT / 83 / C/G(656) / S(Thr) / hypothetical protein CGI_10006775
R:GCTGCATTTAACCCCAACTCC
CgSNP337 / FP006800 / F:GCGGAACTGAAACAGGACC / 110 / C/T(249) / S(Val) / Chitin synthase C
R:TTCTTGTGACATTACAGACATTGTG
CgSNP341 / FQ661874 / F:CACACAAGAGGGATAAGAACGAG / 84 / C/T(132) / S(Gly) / FUN14 domain-containing protein 1
R:TTGTTACATCTTTAACCATATCACG
CgSNP342 / CU992844 / F:CGGCTTTATACGCATTCTACG / 81 / A/G(216) / N(His-Arg) / Unknown
R:ACAATGTCACAAAGAGGGTGATTAT
CgSNP343 / FQ665076 / F:GCAGCCGCATCTACCAGTC / 78 / C/T(153) / S(Ser) / SCO-spondin
R:CGGATTCTTCGGATACAGTTTG
CgSNP347 / HS247620 / F:GAAGTGAAACGTGTCCAGCGTAT / 66 / C/T(138) / S(Arg) / hypothetical protein CGI_10016840
R:CAACATCCCAGTCAGGGCATC
CgSNP352 / FQ662321 / F:CCAGCAAGAAAGATAAAGCACAG / 105 / A/G(106) / N(Gln-Arg) / Translocon-associated protein subunit gamma
R:CGTAGAACAACGCCGAGGAT
CgSNP354 / FQ662321 / F:CTTCTCCATCTTCTACAACAACGC / 81 / A/G(488) / S(Val) / Translocon-associated protein subunit gamma
R:GGGCTGAAGTTCTTGAGGACG
CgSNP364 / HS185440 / F:AGAGACTCGCCTATTGAGTTTCCTC / 87 / C/T(340) / S(Tyr) / Uncharacterized protein C20orf26
R:CGGTCCCAGTTTTACACCATCC
CgSNP375 / HS206440 / F:ACTCTGTTGACGGCTGGAATC / 88 / C/T(284) / S(His) / UPF0451 protein C17orf61-like protein
R:GGGTGACGTATCTTATCTTTGTGTT
CgSNP383 / HS118315 / F:GAAGTTGAAATGGTGTGCCTG / 73 / C/T(183) / S(Phe) / UPF0139 membrane protein C19orf56-like protein
R:TTCTGAAGTCCTTGCGTTGG
CgSNP385 / HS196842 / F:AGAAGAAATGGCTACTGGATTTGCT / 114 / A/T(299) / S(Val) / Complement C1q-like protein 4
R:CATCTCCCAATATCGTTGCTATGAT
CgSNP391 / FQ665299 / F:GCAGCCATAGGTCACAGAGGT / 85 / C/T(100) / S(Ser) / Unknown
R:TGCCATCAGTATATCACATTCGTC
CgSNP396 / FQ663242 / F:TACAAAAGATGGCTCAGTCGTC / 94 / A/G(88) / S(Ile) / hypothetical protein CGI_10010736
R:AACGAGTATTTCTCCAGTTGACC
CgSNP397 / CX068993 / F:TCAATCTGGCTCCTCTTAGACC / 75 / A/G(430) / S(Ser) / hypothetical protein CGI_10010736
R:CGATGGCACCAACGAGTAT
CgSNP400 / FQ665411 / F:GTCACATTACAGTAAGACTGGTTCAG / 96 / G/T(220) / UTR / Unknown
R:ACATAGCACATAAAGTAAGGCAAAG
CgSNP401 / HS205046 / F:GCATGGAACACGTCTTCTGAGAG / 88 / A/T(114) / S(Leu) / Neutral and basic amino acid transport protein rBAT
R:GCGGACTACGAAGGTTAAGGTC
CgSNP402 / HS240316 / F:CGCATTGGTTGAACAAGTCG / 80 / A/T(538) / N(Ile-Met) / Neutral and basic amino acid transport protein rBAT
R:ATCCCGTAGGTCATAGTCTGTAAAG
CgSNP415 / HS245543 / F:CTCAAGGGAGCGTTAGTTGG / 84 / A/C(525) / S(Ala) / endoglucanase
R:GGTGACCTCATTCTTGGTGTAGT
CgSNP420 / HS183638 / F:TGTTCAGAAGACAGGAATCACC / 83 / C/T(104) / S(Ala) / Rho-related GTP-binding protein RhoU
R:TAGATTTCTTGTCCCTCACACTG
CgSNP422 / FQ661519 / F:GAGGGAACACTGAGTTAGGAGAC / 91 / A/G(143) / S(Leu) / Mak3p-like protein
R:TCGTTGTATGTGACAGGAAAGAC
CgSNP430 / HS122127 / F:CTCTCCACATCGCATCGTTC / 82 / C/T(493) / S(Ile) / Notch-regulated ankyrin repeat-containing protein
R:GACATTGTTTTAGTCCTGCTCTTG
CgSNP432 / HS191867 / F:GGGAGTAGTCATACAGCCCAAAT / 102 / A/C(330) / N(Ile-Met) / Neurogenic locus Notch protein
R:CTGCCTCTCGTGAGCTATGTCT
CgSNP433 / HS243524 / F:GCATCGTGATATTTTACGTCTGTTG / 104 / A/T(225) / S(Thr) / Neurogenic locus Notch protein
R:GCATCATGTGCATGTGTCCTG
CgSNP434 / FP007234 / F:TCCACTATTGCCTCTCACATTTATC / 84 / A/G(334) / S(Ala) / Ribonuclease H1
R:GCTTCCTTTCTCATCCTTTCCAT
CgSNP439 / FP002043 / F:TTGCTGAATTTCCTTTCCCT / 68 / C/T(314) / S(Leu) / hypothetical protein CGI_10014414
R:GATCTGTTGCAGTCATATCGTATG
CgSNP447 / AM861463 / F:GACCTGGCTCAGTTCCTTACC / 82 / A/G(176) / S(Leu) / hypothetical protein CGI_10012213
R:CTGTTGCTCTGTCATGTAGTCAAT
CgSNP451 / FQ664603 / F:TGAGTTCAATAAGCGGACGG / 88 / C/T(604) / S(Asn) / hypothetical protein CGI_10015419
R:AAGCATCTTTTGGTGGTCTTTATAG
CgSNP455 / HS244152 / F:TATTGGGCTGAATGTGAGGTT / 96 / A/C(188) / N(Leu-Met) / Unknown
R:GTTCACTGTGGCGGCTCTAT
CgSNP457 / AM862173 / F:ACAGGTGAGAACATTGCTCTGG / 106 / C/T(431) / S(Leu) / PREDICTED: prostamide/prostaglandin F synthase-like
R:GCTGCTTGGCACTCAGTCG
CgSNP472 / HS216518 / F:GGTCAGCAGTGCTGGCAACT / 82 / C/T(143) / S(Asn) / hypothetical protein CGI_10025397
R:CGTCTTGTTTTCCCTGAATGTG
CgSNP474 / FQ664418 / F:GATTCATGGAAGGTGGATAGTG / 114 / C/T(174) / S(Asn) / Low molecular weight phosphotyrosine protein phosphatase
R:TTTGTGGGTGTATGAGGTGATT
CgSNP481 / HS189814 / F:CCACACCAAAGGTAGCAACAGTC / 92 / A/G(275) / N(Met-Val) / N6-adenosine-methyltransferase 70 kDa subunit
R:CTTCTTTTCAACCTCTGGGTCTAC
CgSNP482 / CU999617 / F:AGGTTGAAAAGAAGGTTCTGATGGT / 93 / C/T(342) / S(Ile) / N6-adenosine-methyltransferase 70 kDa subunit
R:GAGCCTTTGTGGTATGGTCTGC
CgSNP484 / CU995803 / F:AACAAACAAGGGGTTGTGTAAATAT / 98 / C/T(230) / N(Trp-Arg) / hypothetical protein
R:GGTTCACTGATGAATCAAGGAAT
CgSNP485 / HS207280 / F:TCCAGGATTCGTACAACCTCG / 91 / C/T(604) / S(Lys) / Apolipoprotein A-I-binding protein
R:GTCTCTATGACGCTGGCAAAAGT
CgSNP499 / HS221825 / F:TCTGTCAGGTAGAGAAATCTCCAAG / 92 / A/G(611) / S(Ala) / ATPase family AAA domain-containing protein 3
R:CGATCATCTGCTCTGTAAGAACG
CgSNP506 / FP006309 / F:GCAGTAGAGAGTGCTCCCCAGT / 105 / C/T(644) / S(Tyr) / Iron/zinc purple acid phosphatase-like protein
R:CCCACAACCATTGCCTCG
CgSNP507 / HS239168 / F:AACCGAAGAAGGATGACCACAG / 82 / C/T(351) / S(His) / Trafficking protein particle complex subunit 2
R:GTCCACACTTGTTCATCTACCAGG
CgSNP509 / HS218562 / F:GCCCACTATTTGCTGGAGAGTC / 91 / A/G(672) / N(Trp) / Unknown
R:CCAGTGATCGGAGCCATTTG
CgSNP512 / HS212954 / F:AGTGAGAAACATTTGCCCTCTTAT / 87 / A/C(557) / N(Leu-Ile) / Long-chain fatty acid transport protein 4
R:GCTTTGCTTGAAGGTACTGGTG
CgSNP515 / HS213806 / F:GGAATCGGTCCAAAGAGAGC / 73 / A/C(608) / N(Ile-Met) / Flap endonuclease 1-A
R:CCAAATGTTTGAGTATTTCGTCG
CgSNP518 / HS165285 / F:GATTGCTTTGAGAATGGCTACG / 106 / A/G(444) / S(Glu) / HEAT repeat-containing protein 2
R:CTTGTATCTTTTGTTCTGGATCATCT
CgSNP519 / HS165285 / F:TAGACCTATACAAGGGAGGCTACT / 114 / C/T(146) / UTR / Unknown
R:TACAAATGTCGCCATTCTTAGAG
CgSNP520 / HS165285 / F:GAGTACCCTCTAAGAATGGCGAC / 61 / A/G(85) / N(Leu-Pro) / Unknown
R:ATGGCAGTGGTGATATGATGTTG
CgSNP524 / FQ665842 / F:CCTGAGGGCATATCTTAGGTCC / 78 / A/C(607) / S(Arg) / Ankyrin repeat domain-containing protein 60
R:GTCTCTTTTTGATCCAGCCAATC
CgSNP532 / HS194495 / F:TGGATGATTTCCGTTACTTTGAT / 84 / A/T(571) / N(Ser-Thr) / Sec1 family domain-containing protein 1
R:CTTCCTGGAATGGAGACTTGTT
CgSNP541 / HS202588 / F:GCTTGACTGTAGAGCGTAGACCT / 94 / A/C(622) / S(Ser) / Unknown
R:TACACTGTACTACCCCCAGCATT
CgSNP542 / FQ669404 / F:TAACTACGATCCAGAGGAGGACAT / 81 / A/G(161) / S(Glu) / MAGUK p55 subfamily member 5
R:ACATGGAGAATGTCGCCCTT
CgSNP544 / FQ669057 / F:GACAACAATCACAGCAGAAGACG / 92 / A/G(646) / S(Ser) / hypothetical protein CGI_10023940
R:TACCACAAACACCTCAACCCAT
CgSNP545 / HS240202 / F:CGACGGTTTAAGCGACGATTAT / 106 / C/T(507) / N(Ser-Pro) / hypothetical protein CGI_10001623
R:GGGGGACAGCTCGGTAGGTAT
CgSNP546 / CU682142 / F:AACGGTTATGCTGTGTTCAATCC / 101 / C/T(353) / S(Ala) / Temptin
R:TGAGCGAATGGGTTTTTGTCTAT
CgSNP548 / FQ661470 / F:GAACCAGGTGTGTAACAATCCAGT / 66 / A/G(154) / S(Ala) / DNA repair protein complementing XP-C cells-like protein
R:GACATTTCAGAGGGCACAAGAG
CgSNP549 / HS203067 / F:CAATGTTCTTTCACTGGAGATCAAG / 96 / C/T(533) / S(Ile) / hypothetical protein CGI_10003281
R:AAGCATCCCCTCAGGTCTCAC
CgSNP559 / HS118830 / F:AGAGAAGCGAGAGGACCCGT / 112 / A/G(689) / S(Arg) / hypothetical protein CGI_10024685
R:GGACACCGAGGCTCCGTT
CgSNP564 / FP003917 / F:GCTACCTGGTTACAAGAGAGTCCG / 82 / C/T(331) / N(Met-Thr) / hypothetical protein CGI_10000670
R:CCTCAGATTCCCTGTCACCGT
CgSNP565 / FP008013 / F:CCTGTGTCAGAGTGCGGGTG / 72 / C/T(303) / N(Thr-Ala) / Unknown
R:GCTCCAGCAACAGCAGAAATG
CgSNP567 / AM868452 / F:TTCCATTTGTGAAAGATGTCTGC / 75 / C/T(32) / S(Cys) / Parkinson disease 7 domain-containing protein 1
R:CGATACACCTTCAACCGCTG
CgSNP569 / FQ665372 / F:TGTGCAATAGGAAGCGGAGTT / 62 / C/T(326) / S(Cys) / Parkinson disease 7 domain-containing protein 1
R:CAGGATTTACCATCGGGTGAC
CgSNP570 / HS245828 / F:ACTTTTGGATGGATGGTTCTGAT / 90 / A/G(737) / N(Met-Val) / Unknown
R:GTTCCCAGTTTGTGTACCTTATTGT
CgSNP571 / CU991163 / F:GAAAGTGACTGGGATGGCGAT / 85 / A/C(798) / N(Gln-Lys) / Nucleoside diphosphate-linked moiety X motif 6
R:ATAAACCGACTCCATTTCTTCATAC
CgSNP573 / HS204769 / F:CCAATAACAGTTTCACTACTCCTCG / 72 / C/T(291) / S(Tyr) / DNA-binding protein RFX6
R:GCACTGCCGTGAAAGAGTTGAT
CgSNP575 / HS196211 / F:TGAAAGTGGAGTACGAAGAGAAATC / 85 / A/G(443) / S(Val) / Myosin-XVIIIa
R:CCTTTGGTTCCCGTCAATGTT
CgSNP577 / CU987300 / F:AACTCACTCAATCTGTCTTTGTGCT / 79 / A/C(149) / S(Ala) / hypothetical protein CGI_10023883
R:TGTGCGTGAACTTCGGCTACT
CgSNP584 / FQ665839 / F:TCGGCTACATGACAGGGCTAG / 80 / A/T(673) / N(Cys-Ser) / Phosphatidylinositol-glycan biosynthesis class F protein
R:GGTGACTTTGTGTTTCCTCAGTTG
CgSNP588 / HS248186 / F:CTCTAACAAAGCTCATTGCCAAC / 93 / A/G(258) / S(Gly) / hypothetical protein CGI_10006884
R:GCCCCAATATACTGTCTATTACCG
CgSNP590 / HS119625 / F:AGGTCTCTCCCACAAAGTGACG / 72 / A/G(443) / S(Ser) / hypothetical protein CGI_10028164
R:GCCCGCTTCCCTATTGATG
CgSNP591 / FP001448 / F:GGAACTGACATCATCAATTACCG / 99 / A/G(181) / S(Pro) / hypothetical protein CGI_10022816
R:ATAGGCTCCGTTTAGAAATCCAT
CgSNP592 / HS115529 / F:GAGCAGCAAGGATATTTACAGG / 90 / C/T(404) / S(Asp) / Unknown
R:GAAATCAGACTGACTCTTCAGACTC
CgSNP594 / ES789564 / F:GGACCAGGAAGAAAAGGTGTATGT / 101 / G/T(299) / S(Leu) / NADPH-dependent diflavin oxidoreductase 1
R:CGGCAATGAAGAACCAGGCT
CgSNP595 / FQ664353 / F:GCCATGTTGCAGTTTATGAAAGT / 98 / G/T(202) / N(Ser-Ala) / hypothetical protein CGI_10026688
R:ATACACAGATCACAGTGCTGATACG
CgSNP599 / AJ565540 / F:CAATCAGTACGGCAAGGGCT / 98 / C/T(101) / S(Ala) / Carnitine O-palmitoyltransferase 1, liver isoform
R:TCTTGTGCATCCTGTAGTAGGCTAG
CgSNP600 / HS148479 / F:ATCAGCCACTATGGACACTGGTAG / 99 / C/T(396) / N(Cys-Arg) / Unknown
R:TTATCCAATCACACTCCTTCGG
CgSNP604 / HS222974 / F:ACACCAGCAAGCACCTGTTCTC / 71 / C/T(547) / S(Ile) / Zinc finger C3H1 domain-containing protein
R:ATTCACACCTACACACCAGTCGG
CgSNP607 / FQ668636 / F:AATACACATACGAGAGTGGCAGC / 77 / A/C(284) / S(Ala) / GDAP2-like protein
R:GTAGACGTACAATGGTTCTCCAATC
CgSNP614 / FQ662358 / F:AACTGTTGTTCCTGGAGGTGAC / 105 / C/T(608) / S(Ser) / Tubulin alpha chain
R:AACTTGTGATCCAGACGAGCC
CgSNP616 / FQ660826 / F:TTCAGGATTCAGTGACTTCAGCAG / 106 / A/G(502) / S(Pro) / hypothetical protein CGI_10020257
R:AGGATCTAGCTCCAGAGTAACGG
CgSNP619 / FQ661911 / F:ATTGGCACCACATTTCAAGGAT / 112 / A/G(284) / N(Gln-Arg) / Unknown
R:AATGCTCTTCATGGAATCTGTGTAG
CgSNP621 / AM861416 / F:CCAACTTTAAGGTTCAATGTGAGC / 95 / C/T(68) / S(Cys) / Ornithine decarboxylase
R:GAGTCCAAGGTTGCGAGCC
CgSNP624 / HS201519 / F:CGCCAATAGCAGTTTGTGAATAG / 98 / A/T(257) / S(Val) / Unknown
R:TCTGGGTAGAGAATAAAAGTTAGCAT
CgSNP625 / HS201519 / F:GTACAGGGGGTTTTAACTGACAAC / 112 / A/C(320) / N(Arg-Ser) / choline transporter-like protein 2-like
R:CAACAGTGACATTCATCCCATTATC
CgSNP626 / HS114546 / F:CCTTTAACTGCGAAATACAGTGTCT / 79 / G/T(579) / N(Cys-Gly) / Unknown
R:TTCTCTTTTGCTGGTGGTCCT
CgSNP627 / HS184567 / F:GACTGCTAACAAGAATCATCCAATC / 108 / G/T(271) / S(Val) / Unknown
R:AATGGCAACCTCTGACATTTTATG
CgSNP628 / CB617564 / F:CAGAAGAACGAGAAAGTTGTCATTG / 89 / G/T(485) / N(Leu-Trp) / Unknown
R:AACAGAGGAGTGAGGCTGGAGTAT
CgSNP632 / BQ427185 / F:GGAAAGTCCAAGCAGATCAAACT / 89 / A/G(387) / S(Gly) / Ras-related protein Rab-5B
R:AACTCCCCTCGCACAAATCTT
CgSNP633 / HS153548 / F:AGGAAAGTCCAAGCAGATCAAAC / 90 / A/T(598) / S(Gly) / Ras-related protein Rab-5B
R:AACTCCCCTCGCACAAATCTT
CgSNP636 / HS119522 / F:CTATGACAGCCAGACAGAGAGGAC / 98 / C/G(280) / S(Leu) / IQ domain-containing protein D
R:TGGTCAAGAATGCCCTAAGGAT
CgSNP638 / FQ662017 / F:AATCCCAGCATTCCATCATTACT / 94 / C/T(361) / UTR / Unknown
R:GCAAGATGTTTCCTTGATAGGTG
CgSNP640 / FQ668769 / F:TCTTGCCTTACTGGGAAATTACG / 89 / A/T(176) / N(Ile-Phe) / Unknown
R:GTTCTTCTGTTGGTTCGCTGAT
CgSNP641 / HS245082 / F:GGTATTAGCCATCATCCTCATCAG / 78 / A/G(278) / S(Ser) / WD40 repeat-containing protein SMU1
R:TCAGGGTTTCCAGATCCTCAGTAG
CgSNP644 / HS233502 / F:TACTGCCGCTCACTTTGTACTAAT / 78 / A/T(389) / N(Leu-His) / hypothetical protein CGI_10026191
R:GCTAGATTCACGGGATATGACG
CgSNP645 / HS241823 / F:AGGATGAATACGGAACTGCGG / 92 / A/T(299) / S(Thr) / Severin
R:GTGACCTTGAACTTCTCTGTGCTGT
CgSNP646 / HS166834 / F:GAGAAAACAGTAGAAATTGACGCC / 79 / A/G(222) / N(Glu-Gly) / Beta-1,3-glucan-binding protein
R:GAAATGGAGTTCTGATCTCAAGTTC
CgSNP647 / HS171142 / F:ACCCCCTTTACTGGTTTTGAATC / 95 / A/G(484) / N(Ser-Lys) / hypothetical protein CGI_10006238
R:GAGCCATACTCAAGACTGCTAGATAG
CgSNP653 / CU995088 / F:GTTCAAAGGTGAGCTGGGGTT / 90 / C/T(719) / S(Phe) / hypothetical protein CGI_10001338
R:GGCACTGTGATTTGGTTGTCTAC
CgSNP657 / HS162948 / F:GAATCCTGCCTCGCCACC / 81 / A/G(281) / N(Asn-Asp) / hypothetical protein CGI_10010255
R:CGTGTGCATGTTACAGTGAAGC
CgSNP663 / HS244621 / F:TAATGGAGGTGGCTGGGATAG / 74 / G/T(90) / S(Gly) / Fatty acid-binding protein, heart
R:TCCGTCCAGATTCTCGTTCC
CgSNP669 / AM855951 / F:GTGTCATGTAACCCACTTCTGC / 86 / A/G(782) / N(Asp-Gly) / Chlorophyllase-2
R:AAGCTGAGGTCACACCCTGTAC
CgSNP671 / FQ662209 / F:TATCCTGATATCCCTGGACGATAG / 89 / C/T(652) / S(Leu) / Selenium-binding protein 1, partial
R:TCCTCCTGTCTGTGATGTCATACTG
CgSNP673 / HS235289 / F:AGATGATTCAACTGAGTCTTGATGG / 91 / C/T(506) / S(Leu) / Selenium-binding protein 1, partial
R:GCTAACTCGGGATAAAACTGGTC
CgSNP676 / AM854277 / F:GTTTCGTGCTGTTGGATGGAC / 106 / A/G(359) / N(Lys-Ser) / Selenium-binding protein 1, partial
R:AGAACATTGTGGTAGGGCTGAT
CgSNP684 / CU683633 / F:TTGGTAAAGGCAGAAAATAGAATC / 88 / A/G(109) / N(Asn-Ser) / Unknown
R:TGACTTTGATGGCTTTGTTAGTTAT
CgSNP685 / HS204812 / F:ATTAAGCACGATGCCCGAAG / 107 / C/T(400) / S(Ser) / hypothetical protein CGI_10011730
R:TTGATGTAAGCGTCCCTGTAGC
CgSNP686 / HS204812 / F:CATCCCAAAGAGCAGTACAAAGG / 109 / A/C(523) / S(Thr) / hypothetical protein CGI_10011730
R:CAGGCTTGAAACTTCTGGTAATCT
CgSNP687 / HS218691 / F:ACCAAGCGTTCTCATCCG / 89 / C/T(422) / S(Asn) / hypothetical protein CGI_10011730
R:TACATAGGGGCGTTCCATT
CgSNP688 / HS218691 / F:GCCAATGGAACGCCCCTAT / 85 / A/G(476) / S(Glu) / hypothetical protein CGI_10011730
R:CGAATTATGCGTGGTGGTCAT
CgSNP690 / ES789251 / F:CAAAGATTTGCTCTTGCCAACAT / 82 / A/G(101) / S(Ser) / Cadherin-89D
R:TCACCACTGACCTTCCCACG
CgSNP692 / HS180509 / F:CACTGATCTATGAGGACTCCATTGT / 102 / A/G(476) / S(Ser) / Unknown
R:TGCTGCTGTTATCATCTGAGTAGGT
CgSNP696 / CU684307 / F:TGAGTCTACAGAAGTCCAAGTTCCT / 68 / A/G(134) / S(Thr) / Peroxisomal 3,2-trans-enoyl-CoA isomerase
R:CTTGTTGACCGTATGTAGCGTG
CgSNP700 / FQ664577 / F:GTCTTGCGTGTCATGGAAAGT / 93 / C/T(378) / N(Phe-Leu) / Unknown
R:CTATACAATAACGAGAAAGGAGGTC
CgSNP703 / HS235227 / F:CGTTACACAGGTAGTGACATACAGG / 76 / A/G(58) / N(Leu-Pro) / Unknown
R:CCATTTCTGGTGGGAGGATAC
CgSNP704 / FQ661085 / F:TGCCAAAGGTGAATACTCAGCC / 97 / A/T(326) / N(Lys-Ter) / Unknown
R:AGGAAGCGACGGTCACTGC
CgSNP705 / HS161306 / F:TGGAAATAAGTATACGTTGTCTGCT / 97 / A/T(233) / UTR / Unknown
R:TATTGACTTAAACACATTCGACCTT
CgSNP710 / AM864897 / F:CTCACAGGAGCAGCAGCATTAT / 90 / A/G(203) / S(Pro) / phosphatase PTC7-like protein
R:GGGCTGTCACTCAAGACAAGTC
CgSNP712 / CU993962 / F:ATGAACAGATCCCTAACCAATGT / 72 / C/T(143) / S(Tyr) / NAD(P) transhydrogenase, mitochondrial
R:CATGGGTTTACCAGTACCAGTG
CgSNP713 / HS191244 / F:TTCAAGCAGAACACCAGCAT / 65 / C/T(21) / S(Asp) / NAD(P) transhydrogenase, mitochondrial
R:TTCGTCAGTAAAGCATCACAAGT
CgSNP715 / AM868540 / F:GGAGTGTATCGACAATGAAGAAGTG / 83 / A/C(486) / S(Ser) / Cat eye syndrome critical region protein 5
R:CCGTCTGTTGGTAGAGGTGAGAG
CgSNP716 / FQ661034 / F:GCCATTTTACCAGTTATACAGTTGAT / 96 / A/C(517) / UTR / Unknown
R:ATTGGAAGAAACAGTTGGAGGAT
CgSNP717 / HS201757 / F:TTGTGGTCCCTACTGTGGTGC / 79 / C/T(626) / S(Phe) / Acyl-CoA desaturase
R:CGTAGCAACGCTGACAGGAAG
CgSNP722 / HS247972 / F:ATCTGTCGCCATTGAGGGTTC / 74 / A/T(642) / N(Phe-Tyr) / Agrin
R:CGTAGTCGGACCTGGTGTGC
CgSNP723 / FQ665437 / F:GACTCGCACACCAGGTCCG / 102 / C/T(89) / S(Ser) / Agrin
R:GCCATTTTTGCTCACACGC
CgSNP737 / HS181577 / F:GAAGTAATTCAGGGCATGTGTCT / 89 / A/G(319) / UTR / Unknown
R:GAGACTGGACAGAGAATGTTGTGT
CgSNP738 / FQ668446 / F:TTCCCTGACCTTTGGTAGTTTG / 68 / C/T(560) / S(Ile) / Unknown
R:GAAGCATTTGGAGATGTTTTAGTGT
CgSNP742 / HS118865 / F:CGGGACAGCAGAGGAGCAC / 86 / C/T(208) / S(Leu) / Sorting nexin-2
R:CGGCGTGAACGGTCTCTATG
CgSNP744 / CU998571 / F:GAATGACTTTTCGTTGTTAGAGATG / 71 / A/T(1008) / S(Thr) / Unknown
R:TAAGATTTAGCAGGAAGCAGAGAG
CgSNP746 / HS231035 / F:AAGAAAGCTATCATACTGCTGAGAG / 84 / C/T(319) / S(Leu) / hypothetical protein CGI_10002951
R:ATTACGATACTGGTCTTCTGATGC
CgSNP747 / FQ669533 / F:CCTCAAACAACGAAGATTTCCTC / 76 / A/T(424) / N(Ile-Met) / Chymotrypsin-like serine proteinase
R:GTTCCGACATTGGTGCGAC
CgSNP751 / HS239408 / F:GACGGATAACAAGTGGAGAAGAATG / 83 / C/T(481) / S(Ser) / Neuroendocrine convertase 2
R:CCTGCTTGAATAGGAAAAAGATACC
CgSNP755 / HS230621 / F:TTCCAGAAACACTATCTTCACCAAC / 61 / C/T(203) / S(Ala) / Phosphoenolpyruvate carboxykinase, cytosolic [GTP]
R:CTCCCAGAAAACACCACCGTC
CgSNP756 / HS247092 / F:TTTGGGCATTATTTGGAACAC / 92 / C/T(582) / S(Pro) / Phosphoenolpyruvate carboxykinase, cytosolic [GTP]
R:TCCTTTCTGAACCAGTTGACG
CgSNP757 / FQ664184 / F:ATCTCCCTCCAGAAATAATGAAAG / 85 / A/G(167) / S(Ser) / Phosphoenolpyruvate carboxykinase, cytosolic [GTP]
R:GGAGTAACGGAAGAGACTGCTGT
CgSNP764 / CU995469 / F:TCCAAGACAACCGACTTCCTC / 91 / C/G(549) / S(Val) / hypothetical protein CGI_10010644
R:GTTTTAGCAAAGACTTCAGCAATG
CgSNP765 / HS193152 / F:CCAACAACATGCGGTCACTAAT / 89 / A/T(175) / N(Ile-Asn) / Unknown
R:GCTCAGACCCAAGATGGTTCTAT
CgSNP766 / HS191948 / F:TGAGGACACTGGGTCACCTGTAT / 75 / G/T(172) / S(His) / Unknown
R:GATGATCCCTGGGGTCTGG
CgSNP770 / FQ661703 / F:ACCAATGCCGTTTCCAGATTAC / 92 / G/T(161) / N(Val-Gly) / Body wall muscle protein HR-29
R:CCATAGTCGGGGCTACTGTTGAT
CgSNP771 / HS226592 / F:GAGGAGGTTCAGAGTGCCCAT / 101 / C/T(425) / S(Asp) / Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1
R:GCGAAGGTGTTAGCGTCTTTG
CgSNP775 / HS186164 / F:ACCCGATTCAACAATTCCTTCC / 94 / C/T(667) / S(Tyr) / hypothetical protein CGI_10005171
R:CCACACCGTACTTTTCCTCCG
CgSNP779 / FP008431 / F:TTCTTGGTGATCTTCACATTCCTC / 87 / A/G(100) / S(Lys) / Vacuolar protein sorting-associated protein 29
R:TATGTTGGATTTTTCCTGGCAC
CgSNP781 / FQ667892 / F:ATGTTACTCCTTCCTTTGTTATCCT / 78 / A/T(223) / S(Val) / Vacuolar protein sorting-associated protein 29
R:CATCCTGAACCAATTTGTAGACG
CgSNP782 / FQ661788 / F:ATGCTGTTGTCGTGTAGTGAATC / 77 / C/T(136) / S(Ser) / Retinoic acid-induced protein 1
R:TGGACACTTTCTTTGTAATCTTTTG
CgSNP783 / FQ661788 / F:TGGGCTGATGGGGTTCTACTTAT / 84 / C/T(556) / S(Gly) / Retinoic acid-induced protein 1
R:TGAACACATTGTGGTTGAGGCTAT
CgSNP784 / HS120834 / F:AAATTGCTCAGTCTATTGATGCTCT / 78 / A/C(398) / S(Ala) / Tektin-4
R:TGTTATCCTGGAGGTCCTTTCG
CgSNP789 / HS162464 / F:CAGGCACACCAAGTTAGAAAGC / 87 / C/T(345) / S(Ser) / Putative E3 ubiquitin-protein ligase HERC2
R:TCTGGACAGTAAGTAGGAACTCGG
CgSNP791 / CU992578 / F:ACTAAAGGAAAAATTGAAAGAAGGC / 110 / A/G(284) / N(Arg-Cys) / Unknown
R:CATGTTGTATTGCTTGGTTTGACTC
CgSNP793 / FQ666082 / F:AGCCACACAGGAAGAAATTGAAC / 92 / A/G(237) / S(Glu) / hypothetical protein CGI_10006610
R:CGTGTATCAGTCCCCACAGGTC
CgSNP794 / FQ666082 / F:GCTGGAACCAAGGAAGACGAG / 68 / A/G(347) / N(Glu-Gly) / Unknown
R:AGTTCTGCGAGATACGCCATAC
CgSNP799 / HS117347 / F:AGAAAGAAGCAACAGAAGAAGGC / 99 / A/G(531) / S(Ser) / Unknown
R:GAAAGTTTTTGTATTGAAGTCCAGC
CgSNP800 / HS115998 / F:ATGACGAATTTAGAAAACCAGAATG / 80 / A/G(646) / S(Lys) / UPF0184 protein C9orf16-like protein
R:GCCCTCATCTGTCGGTTAGACTC
CgSNP803 / EW778209 / F:GCAGGTACAGTGAATAGAGGAAGTG / 69 / A/G(684) / S(Ala) / Eukaryotic translation initiation factor 6
R:GAAGGCGATCCAGTCGTTGAC
CgSNP804 / CU991151 / F:TGGATACCACCAGTACGGAGC / 73 / A/G(777) / S(Val) / Eukaryotic translation initiation factor 6
R:ATGGCACTAGGCGTCCTGTC
CgSNP805 / HS200388 / F:CGACCCTTCTATCTGCCAGAGTAT / 84 / G/T(216) / N(Ser-Ala) / hypothetical protein CGI_10016494
R:GCGTGGTTTAGAGTGGTGTTGT
CgSNP807 / HS122490 / F:AAGGCTTCGGCACTTGGAG / 115 / A/G(637) / N(Thr-Ala) / Chromosome-associated kinesin KIF4B
R:GACAGCGTCTTGTATGGCATCT
CgSNP810 / AM860404 / F:CCGTTTAGCAACACCTGTAGTCT / 86 / A/G(331) / UTR / Unknown
R:AATAGTACACTTATAGCCAAGCAAGC
CgSNP816 / CU994281 / F:TAGACTATGACAGTGGGGAAACAG / 69 / C/T(816) / UTR / Unknown
R:AAATGGAACTTCTGCGACGAT
CgSNP817 / HS122349 / F:CAGAACATCTCAGTCACTGGGTC / 111 / C/T(511) / UTR / Unknown
R:TGGCTAAGTACACTGTCTGTTTGAT
CgSNP819 / HS201711 / F:AACCTTGCTTGGATCTTTAGGAAAT / 103 / A/G(283) / N(Met-Val) / hypothetical protein CGI_10008992
R:ACAACTTACGGACCAACCATCATAG
CgSNP820 / CU997135 / F:CCGATCACTTAGAAATGCCTTG / 97 / C/T(118) / S(Ala) / Myosin light chain kinase, smooth muscle
R:GCCTTTGGAATTGAGAGTGGAG
CgSNP825 / FQ664346 / F:TCCTTCAAAGAATCCAAGATTACCT / 77 / A/G(387) / S(Ser) / hypothetical protein CGI_10020589
R:CCGCAACCTTTCATTAAGTTCC
CgSNP827 / FP002613 / F:AAGCTGTGGTGTCCTTGAATTATC / 99 / A/G(477) / S(Glu) / Fibulin-2
R:TCCCTGTGTAGCGAGACCTGAG
CgSNP832 / HS173157 / F:GAGACTTTTACTGGGTCTGTGAGAG / 92 / A/G(516) / UTR / Unknown
R:GCGTTGGTTTTCAATGATAGC
CgSNP834 / HS155214 / F:AAGTGTGCCAGTGTAAGGATGCT / 100 / G/T(441) / S(Ala) / Negative elongation factor A
R:AATGTTTGACAGGTTGGGGAAG
CgSNP835 / HS155215 / F:TGACCATACATTTTGTGCCATTC / 105 / G/T(90) / N(Ile-Ser) / Unknown
R:AATTTCCATACAACAAGGATACCAC
CgSNP836 / FP004614 / F:GGACAGGTTCTAGGGGCAGT / 76 / C/G(80) / S(Pro) / Eukaryotic translation initiation factor 2 subunit 3, Y-linked
R:TCCTGAGTAAGAAGAAAGAGATGGT
CgSNP846 / HS113998 / F:GGAGTCTGCTGTATGTGTTATTGCT / 75 / C/T(231) / UTR / Unknown
R:CAGTGATTGGATGATTCTCTACTGAC
CgSNP847 / HS119026 / F:GGAGTTTGGTGATGGTGAGACG / 68 / C/T(729) / S(Val) / Unknown
R:AGGTGAAGGTCCCTCAGGAGT
CgSNP850 / HS239960 / F:AGATGCACCTCGGATGTCATTC / 74 / A/G(249) / N(Asn-Asp) / Heat shock 70 kDa protein 12B
R:TGCTTGATTCGTCAATATAAACTGG
CgSNP851 / HS186364 / F:GCATCTGTATTTCCTTGAATTGTAC / 89 / C/T(146) / N(Ser-Phe) / Unknown
R:ATCAAACCAAAGCACTGAATGT
CgSNP853 / HS215568 / F:GGTACAGGAGAGTGATTCAGGTTAC / 84 / C/T(216) / S(Ala) / Unknown
R:GGGTGAACAGGAATTGTTGGT
CgSNP854 / FP011168 / F:CAGGAGCTGACAGAGAGGTACAG / 93 / A/T(223) / S(Leu) / 26S protease regulatory subunit 6B
R:CCATTATCACCTTAACATTGACAGT
CgSNP857 / FQ669493 / F:CACCAGACACGATAAAGGACGAG / 66 / A/G(131) / N(Ser-Gly) / hypothetical protein CGI_10002446
R:CCATGTAATCACTTTGAATAGATGCC
CgSNP858 / HS184940 / F:GTCAGAAGAATTAGGGGTCACTATG / 97 / A/G(582) / S(Gly) / hypothetical protein CGI_10005976
R:GACAACGTAATCGCTCACACTC
CgSNP863 / HS241268 / F:TCATCCCTGTGTACATCAAACTGTG / 99 / A/G(174) / S(Gly) / Arylacetamide deacetylase
R:CATAACTTCAGAATCTCTGTGTCCG
CgSNP867 / FP007625 / F:TTCAATGACCTCAGTCCACAAGC / 72 / G/T(180) / S(Val) / Histidine triad nucleotide-binding protein 1
R:GGATAATCGGGAGATTGGTTTC
CgSNP869 / HS173671 / F:ATGCGTAATCCCACATTGTAGAG / 74 / A/G(602) / S(Val) / Unknown
R:CACGGAATGAGGGGTTGAT
CgSNP870 / DV736587 / F:TCTCTATCGGTTCTTCTCTGATTG / 73 / C/T(208) / N(Met-Thr) / Unknown
R:GAGGTAGATTTAGTCTCGTTTCTACTG

S, synonymous; N, non-synonymous; UTR, untranslated region