Supplementary information

Reference sequences used in this study

No. / Strain / Year / Geographic location / Source / Host / Genotype / GenBank
accession no.
Country/location
1 / HNTH04-41* / 2004 / China Henan / Culex spp / 1 / KM655812
2 / SDJZ09-1* / 2009 / China Shandong / Culex pipiens / 1 / KM655810
3 / SDRZ12-50* / 2012 / China Shandong / Culex pipiens / 1 / KM655813
4 / SDRZ12-66* / 2012 / China Shandong / Culex pipiens / 1 / KM655811
5 / SXYA12-28-4* / 2012 / China Shaanxi / Culex pipiens / 1 / KM655814
6 / SXYA12-28-6* / 2012 / China Shaanxi / Culex pipiens / 1 / KM655815
7 / SDDM06-11 / 2006 / China Shandong / Culex pipiens / 1 / JF938690
8 / H0901 / 2009 / China Liaoning / Culexpipiens pallens / 1 / HQ678513
9 / HLD102 / 2010 / China Liaoning / Culex pipiens pallens / 1 / JQ308186
10 / HLD105 / 2010 / China Liaoning / Culex pipiens pallens / 1 / JQ308187
11 / DG1064 / 2010 / China Liaoning / Anopheles sinensis / 1 / JQ308188
12 / DG1068 / 2010 / China Liaoning / Culex pipiens pallens / 1 / JQ308189
13 / DG1007 / 2010 / China Liaoning / Culex tritaeniorhynchus / 1 / JQ308190
14 / Narita / 2003 / Japan Chiba-Narita / Culex pipiens / 1 / AB262760
15 / Toyama / 2003 / Japan Toyama / Culex pipiens / 1 / AB262761
16 / Hokkaido / 2003 / Japan Hokkaido / Culex pipiens / 1 / AB262762
17 / Osaka / 2003 / Japan Osaka / Culex pipiens / 1 / AB262763
18 / Morioka / 2003 / Japan Iwate-Morioka / Culex pipiens / 1 / AB262765
19 / Tokyo / 2003 / Japan Tokyo-Shinjuku / Culex pipiens / 1 / NC_008604 / AB262759
20 / Mie-Cp / 2004 / Japan Mie-Tsu / Culex pipiens / 1 / AB262764
21 / Mie-Ct / 2004 / Japan Mie-Tsu / Culex tritaeniorhynchus / 1 / AB262767
22 / NIID-21-2 / 2004 / Japan Tokyo-Shinjuku / Culex pipiens / 1 / AB377213
23 / Toyama71 / 2004 / Japan Toyama / Culex tritaeniorhynchus / 1 / AB701766
24 / Toyama41 / 2004 / Japan Toyama / Culex pipiens group / 1 / AB701770
25 / Toyama75 / 2004 / Japan Toyama / Culex pipiens group / 1 / AB701771
26 / Toyama734 / 2005 / Japan Toyama / Culex tritaeniorhynchus / 1 / AB701767
27 / Toyama740 / 2005 / Japan Toyama / Culex pipiens group / 1 / AB701772
28 / Toyama791 / 2005 / Japan Toyama / Culex pipiens group / 1 / AB701773
29 / Toyama861 / 2005 / Japan Toyama / Culex pipiens group / 1 / AB701774
30 / Toyama1701 / 2006 / Japan Toyama / Culex tritaeniorhynchus / 1 / AB701768
31 / Toyama1431 / 2006 / Japan Toyama / Culex pipiens group / 1 / AB701775
32 / Toyama1849 / 2007 / Japan Toyama / Culex tritaeniorhynchus / 1 / AB701769
33 / Toyama2627 / 2008 / Japan Toyama / Culex pipiens group / 1 / AB701776
34 / Surabaya / 2004 / Indonesia Surabaya / Culex quinquefasciatus / 1 / AB262766
35 / Izabal / 2006 / Guatemala / Culex quinquefasciatus / 1 / EU805805
36 / Iowa07 / 2007 / USA Iowa / Culex pipiens / 1 / FJ663034
37 / 1064 / 2007 / USA Iowa / Culex pipiens / 1 / FJ663026
38 / 380 / 2007 / USA Iowa / Culex pipiens / 1 / FJ663027
39 / 383 / 2007 / USA Iowa / Culex pipiens / 1 / FJ663028
40 / 635 / 2007 / USA Iowa / Culex pipiens / 1 / FJ663029
41 / 318 / 2007 / USA Iowa / Culex pipiens / 1 / FJ663030
42 / 377 / 2007 / USA Iowa / Culex pipiens / 1 / FJ663031
43 / 599 / 2007 / USA Iowa / Culex pipiens / 1 / FJ663032
44 / 657 / 2007 / USA Iowa / Culex pipiens / 1 / FJ663033
45 / HOU24518 / 2008 / USA Texas / Culex quinquefasciatus / 1 / FJ502995
46 / HOU24519 / 2008 / USA Texas / Culex restuans / 1 / FJ502996
47 / HOU24284 / 2008 / USA Texas / Culex restuans / 1 / FJ502997
48 / HOU24471 / 2008 / USA Texas / Culex restuans / 1 / FJ502998
49 / HOU24516 / 2008 / USA Texas / Culex quinquefasciatus / 1 / FJ502999
50 / HOU24522 / 2008 / USA Texas / Culex quinquefasciatus / 1 / FJ503000
51 / HOU24559 / 2008 / USA Texas / Culex quinquefasciatus / 1 / FJ503001
52 / GA2512 / 2009 / USA DeKalb / Culexquinquefasciatus / 1 / HQ634589
53 / GA2517 / 2009 / USA DeKalb / Culexquinquefasciatus / 1 / HQ634590
54 / GA2572 / 2009 / USA DeKalb / Culexquinquefasciatus / 1 / HQ634591
55 / GA3028 / 2009 / USA Fulton / Culexquinquefasciatus / 1 / HQ634593
56 / TR3115 / 2008 / West Indies, Trinidad / Culex quinquefasciatus / 2 / FJ503002
57 / TR3116 / 2008 / West Indies, Trinidad / Culex quinquefasciatus / 2 / FJ503003
58 / CxFV-Mex07 / 2007 / Mexico Yucatan State / Culex quinquefasciatus / 2 / EU879060
59 / T955 / 2008 / Mexico Yucatan Peninsula / Culex interrogator / 2 / GU289683
60 / M2168 / 2008 / Mexico Yucatan Peninsula / Culex quinquefasciatus / 2 / GU289684
61 / M2313 / 2008 / Mexico Yucatan Peninsula / Culex quinquefasciatus / 2 / GU289685
62 / M2605 / 2008 / Mexico Yucatan Peninsula / Culex quinquefasciatus / 2 / GU289686
63 / M2614 / 2008 / Mexico Yucatan Peninsula / Culex quinquefasciatus / 2 / GU289687
64 / M2617 / 2008 / Mexico Yucatan Peninsula / Culex quinquefasciatus / 2 / GU289688
65 / M2618 / 2008 / Mexico Yucatan Peninsula / Culex quinquefasciatus / 2 / GU289689
66 / M2630 / 2008 / Mexico Yucatan Peninsula / Culex quinquefasciatus / 2 / GU289690
67 / M2635 / 2008 / Mexico Yucatan Peninsula / Culex quinquefasciatus / 2 / GU289691
68 / M2636 / 2008 / Mexico Yucatan Peninsula / Culex quinquefasciatus / 2 / GU289692
69 / M2637 / 2008 / Mexico Yucatan Peninsula / Culex quinquefasciatus / 2 / GU289693
70 / M2644 / 2008 / Mexico Yucatan Peninsula / Culex quinquefasciatus / 2 / GU289694
71 / M2645 / 2008 / Mexico Yucatan Peninsula / Culex quinquefasciatus / 2 / GU289695
72 / M2648 / 2008 / Mexico Yucatan Peninsula / Culex quinquefasciatus / 2 / GU289696
73 / M2650 / 2008 / Mexico Yucatan Peninsula / Culex quinquefasciatus / 2 / GU289697
74 / M2656 / 2008 / Mexico Yucatan Peninsula / Culex quinquefasciatus / 2 / GU289698
75 / M2663 / 2008 / Mexico Yucatan Peninsula / Culex quinquefasciatus / 2 / GU289699
76 / M2665 / 2008 / Mexico Yucatan Peninsula / Culex quinquefasciatus / 2 / GU289700
77 / Uganda08 / 2008 / Uganda / Culex quinquefasciatus / 2 / GQ165808
78 / TW100322 / 2010 / China (Taiwan) / Culex tritaeniorhynchus / 2 / JX416692
79 / TW100614 / 2010 / China (Taiwan) / Culex quinquefasciatus / 2 / JX416693
80 / TW100607 / 2010 / China (Taiwan) / Culex quinquefasciatus / 2 / JX416694
81 / TW100611 / 2010 / China (Taiwan) / Culex tritaeniorhynchus / 2 / JX416695
82 / TW110224 / 2011 / China (Taiwan) / Culex quinquefasciatus / 2 / JX416696
83 / TW120301 / 2012 / China (Taiwan) / Culex tritaeniorhynchus / 2 / JX416697

*The CxFV isolates used in the present study