Indicates Subject Died Within 6 Months Following Sampling

Table S3.

Individual / Week / Group / SOB1 / Chao12 / LCI / HCI / Shannon / LCI / HCI / Simpson / LCI / HCI
IJMIM / 5 / Motiepa / 902 / 2 107 / 1 831 / 2 463 / 5.17 / 5.12 / 5.23 / 0.020 / 0.019 / 0.022
6 / Motiepa / 1122 / 2 670 / 2 354 / 3 067 / 5.84 / 5.80 / 5.89 / 0.007 / 0.006 / 0.007
7 / Motiepa / 813 / 2 015 / 1 732 / 2 386 / 5.26 / 5.21 / 5.30 / 0.015 / 0.014 / 0.016
8 / Motiepa / 787 / 1 614 / 1 400 / 1 898 / 5.29 / 5.24 / 5.33 / 0.012 / 0.011 / 0.012
Average3 / 906 ± 196 / 2 102 ± 561 / 5.39 ± 0.39 / 0.013 ± 0.007
AM1M / 1 / Motiepa / 829 / 1 846 / 1 598 / 2 173 / 5.59 / 5.55 / 5.63 / 0.008 / 0.008 / 0.009
3 / Motiepa / 956 / 2 388 / 2 081 / 2 782 / 5.66 / 5.61 / 5.70 / 0.009 / 0.008 / 0.010
5 / Motiepa / 926 / 2 145 / 1 879 / 2 488 / 5.65 / 5.61 / 5.70 / 0.008 / 0.008 / 0.009
6 / Motiepa / 1 034 / 2 650 / 2 295 / 3 105 / 5.80 / 5.76 / 5.84 / 0.007 / 0.007 / 0.008
Average / 936 ± 109 / 2 257 ± 442 / 5.68 ± 0.11 / 0.008 ± 0.001
SAM1M / 4 / Motiepa / 795 / 1 577 / 1 393 / 1 817 / 5.20 / 5.15 / 5.25 / 0.022 / 0.020 / 0.024
5 / Motiepa / 705 / 1 535 / 1 338 / 1 796 / 4.61 / 4.55 / 4.67 / 0.045 / 0.041 / 0.048
6 / Motiepa / 1 166 / 3 052 / 2 668 / 3 533 / 5.83 / 5.78 / 5.87 / 0.008 / 0.007 / 0.008
Average / 889 ± 363 / 2 055 ± 1 285 / 5.21 ± 0.91 / 0.025 ± 0.028
IJM2M / 1 / Motiepa / 870 / 1 697 / 1 504 / 1 946 / 5.38 / 5.33 / 5.43 / 0.013 / 0.012 / 0.014
3 / Motiepa / 908 / 2 322 / 2 006 / 2 729 / 5.28 / 5.23 / 5.33 / 0.015 / 0.014 / 0.016
5 / Motiepa / 911 / 2 197 / 1 930 / 2 536 / 5.44 / 5.39 / 5.49 / 0.013 / 0.012 / 0.014
6 / Motiepa / 1 006 / 2 344 / 2 048 / 2 723 / 5.68 / 5.63 / 5.72 / 0.008 / 0.008 / 0.009
7 / Motiepa / 966 / 2 236 / 1 966 / 2 579 / 5.57 / 5.52 / 5.61 / 0.012 / 0.011 / 0.013
8 / Motiepa / 618 / 1 189 / 1 030 / 1 409 / 4.82 / 4.76 / 4.87 / 0.031 / 0.029 / 0.034
Average / 880 ± 144 / 1 997 ± 486 / 5.36 ± 0.32 / 0.015 ± 0.008
AM1B / 6 / Balam / 926 / 2 036 / 1 793 / 2 350 / 5.62 / 5.57 / 5.66 / 0.010 / 0.009 / 0.010
8 / Balam / 785 / 1 642 / 1 451 / 1 891 / 5.40 / 5.36 / 5.45 / 0.016 / 0.014 / 0.017
Average / 856 ± 182 / 1 839 ± 507 / 5.51 ± 0.28 / 0.013 ± 0.008
IJM1B / 5 / Balam / 1 208 / 2 901 / 2 552 / 3 336 / 5.85 / 5.80 / 5.90 / 0.008 / 0.008 / 0.009
6 / Balam / 954 / 2 226 / 1 945 / 2 588 / 5.64 / 5.60 / 5.69 / 0.009 / 0.008 / 0.009
7 / Balam / 977 / 2 207 / 1 942 / 2 545 / 5.75 / 5.70 / 5.79 / 0.009 / 0.008 / 0.010
8 / Balam / 602 / 1 198 / 1 037 / 1 420 / 4.68 / 4.63 / 4.74 / 0.047 / 0.043 / 0.051
Average / 935 ± 322 / 2 133 ± 904 / 5.48 ± 0.70 / 0.018 ± 0.025
DJF1B / 7 / Balam / 648 / 1 377 / 1 174 / 1 657 / 4.89 / 4.83 / 4.94 / 0.027 / 0.025 / 0.029
AF1B / 3 / Balam / 825 / 1 844 / 1 605 / 2 156 / 5.21 / 5.15 / 5.26 / 0.017 / 0.016 / 0.018
5 / Balam / 984 / 2 354 / 2 067 / 2 718 / 5.57 / 5.52 / 5.62 / 0.014 / 0.012 / 0.015
6 / Balam / 901 / 1 916 / 1 684 / 2 217 / 5.39 / 5.34 / 5.44 / 0.015 / 0.014 / 0.016
8 / Balam / 692 / 1 515 / 1 311 / 1 789 / 5.08 / 5.03 / 5.14 / 0.025 / 0.023 / 0.027
Average / 851 ± 160 / 1 907 ± 445 / 5.31 ± 0.28 / 0.018 ± 0.006
AF2B / 1 / Balam / 957 / 2 199 / 1 930 / 2 542 / 5.70 / 5.66 / 5.75 / 0.008 / 0.008 / 0.009
3 / Balam / 908 / 2 201 / 1 911 / 2 575 / 5.43 / 5.38 / 5.48 / 0.013 / 0.012 / 0.013
5 / Balam / 1 116 / 2 864 / 2 496 / 3 328 / 5.77 / 5.73 / 5.82 / 0.009 / 0.009 / 0.010
6 / Balam / 1 145 / 2 606 / 2 311 / 2 975 / 6.00 / 5.96 / 6.05 / 0.006 / 0.006 / 0.007
7 / Balam / 981 / 2 406 / 2 100 / 2 796 / 5.28 / 5.23 / 5.34 / 0.028 / 0.025 / 0.030
8 / Balam / 809 / 1 629 / 1 432 / 1 890 / 5.58 / 5.54 / 5.63 / 0.009 / 0.008 / 0.010
Average / 986 ± 133 / 2 317 ± 444 / 5.63 ± 0.27 / 0.012 ± 0.009
AF1M / 3 / Motiepa / 973 / 2 669 / 2 290 / 3 158 / 5.64 / 5.59 / 5.69 / 0.010 / 0.009 / 0.011
5 / Motiepa / 1 079 / 2 623 / 2 307 / 3 020 / 5.55 / 5.50 / 5.60 / 0.013 / 0.012 / 0.015
6 / Motiepa / 1 063 / 2 789 / 2 421 / 3 257 / 5.82 / 5.78 / 5.87 / 0.007 / 0.006 / 0.007
7 / Motiepa / 981 / 2 209 / 1 951 / 2 536 / 5.67 / 5.62 / 5.72 / 0.010 / 0.010 / 0.011
8 / Motiepa / 911 / 2 072 / 1 811 / 2 410 / 5.50 / 5.46 / 5.55 / 0.014 / 0.012 / 0.015
Average / 1 001 ± 80 / 2 473 ± 360 / 5.64 ± 0.14 / 0.011 ± 0.003
AM2M / 1 / Motiepa / 862 / 1 657 / 1 475 / 1 892 / 5.50 / 5.45 / 5.54 / 0.011 / 0.010 / 0.012
5 / Motiepa / 976 / 2 302 / 2 024 / 2 655 / 5.61 / 5.56 / 5.66 / 0.012 / 0.011 / 0.013
6 / Motiepa / 1 214 / 3 297 / 2 878 / 3 819 / 5.81 / 5.76 / 5.85 / 0.009 / 0.008 / 0.010
8 / Motiepa / 937 / 2 129 / 1 863 / 2 470 / 5.49 / 5.44 / 5.54 / 0.012 / 0.011 / 0.012
Average / 997 ± 196 / 2 346 ± 889 / 5.60 ± 0.19 / 0.011 ± 0.002
AF2M / 5 / Motiepa / 932 / 2 092 / 1 842 / 2 410 / 5.41 / 5.36 / 5.46 / 0.012 / 0.012 / 0.013
6 / Motiepa / 1 219 / 2 914 / 2 582 / 3 326 / 6.02 / 5.97 / 6.06 / 0.006 / 0.005 / 0.006
7 / Motiepa / 980 / 2 283 / 2 013 / 2 626 / 5.72 / 5.68 / 5.77 / 0.008 / 0.008 / 0.009
Average / 1 044 ± 229 / 2 430 ± 640 / 5.72 ± 0.45 / 0.009 ± 0.005
AM3M / 2 / Motiepa / 867 / 1 740 / 1 539 / 2 001 / 5.61 / 5.56 / 5.65 / 0.008 / 0.008 / 0.009
5 / Motiepa / 976 / 2 409 / 2 092 / 2 815 / 5.57 / 5.53 / 5.62 / 0.011 / 0.010 / 0.012
6 / Motiepa / 1 137 / 2 625 / 2 335 / 2 986 / 5.95 / 5.91 / 6.00 / 0.007 / 0.007 / 0.008
7 / Motiepa / 943 / 1 829 / 1 624 / 2 093 / 5.53 / 5.49 / 5.58 / 0.011 / 0.011 / 0.012
Average / 981 ± 146 / 2 151 ± 558 / 5.67 ± 0.25 / 0.009 ± 0.003
AM2B / 1 / Balam / 792 / 1 766 / 1 527 / 2 082 / 5.10 / 5.05 / 5.15 / 0.020 / 0.018 / 0.022
3 / Balam / 834 / 2 015 / 1 735 / 2 380 / 5.26 / 5.21 / 5.31 / 0.018 / 0.016 / 0.019
5 / Balam / 999 / 2 258 / 1 982 / 2 609 / 5.56 / 5.51 / 5.61 / 0.012 / 0.011 / 0.013
7 / Balam / 954 / 2 445 / 2 104 / 2 884 / 5.49 / 5.44 / 5.53 / 0.012 / 0.011 / 0.012
8 / Balam / 720 / 1 481 / 1 304 / 1 716 / 5.24 / 5.19 / 5.29 / 0.018 / 0.017 / 0.020
Average / 860 ± 133 / 1 993 ± 441 / 5.33 ± 0.22 / 0.016 ± 0.004

1 Number of OTUs observed; 2 Chao1 prediction of total richness; 3 Overall data includes the averages ± a 99% confidence interval of all metrics.

# Indicates subject died within 6 months following sampling