IL-18R1 and IL-18RAP SNPs may associate with Bronchopulmonary Dysplasia in African American infants
JOANNA FLOROS*, DOUGLAS LONDONO, DEREK GORDON, PATRICIA SILVEYRA, SUSAN L DIANGELO, ROSE M VISCARDI, GEORGE S WORTHEN, JEFFREY SHENBERGER, GUIRONG WANG, ZHENWU LIN, AND NEAL J THOMAS
Online Data Supplement
Data Management
The genotype data sent to Public Health Sciences (PHS) at the Penn State Hershey College of Medicine, contained genotypes for all samples, (6,324 successful SNPs (out of 6,476) x 1,235 successful samples (out of 1,267 total samples), and identifiers that included, SNP name, sample ID, and GC score. These were loaded into an Oracle database, merged with the clinical database, and samples from identical siblings from multiple births (n=68), and genotype control (n=16) samples and duplicates (n=52) were removed. A Reproducibility and Heritability Report (RHR) was generated to identify identical siblings. RHR contained the number of identical SNPs for each pair, the number of errors, the total number of SNPs analyzed, and the Reproducibility Frequency (RF). RF = 1.0 denotes an identical match, and 68 matches were found. The sample from each pair with the lower GC score was removed. From samples (n=52) represented in duplicate (i.e. genomic DNAs and WGA DNA) the sample with the lower GC score was removed. No significant difference was observed in genotype quality between genomic and WGA DNAs (t-test; p=0.173). The remaining samples n=1099 were formatted compatible with the PLINK software, http//pngu.mgh.harvard.edu/~purcell/plink/ and used to create MAP, LGEN, and FAM files for statistical analyses. MAP contained 3 data columns (chromosome (1-22, X, Y or O if unplaced), rs# or SNP identifier, and base-pair position. LGEN had 5 columns including Family ID, individual ID, SNP identifier (same as in MAP file), and allele 1 and 2 forward, a convention for SNP naming. Twenty-four samples had results for 6,323 SNPs and the remainder (n=1075) for 6,324 SNPs. FAM files were created for each phenotype (i.e. RDS, BPD) and each covariate (i.e. gestational age, birth weight, surfactant therapy, steroids, etc.) selected for analysis, and included among others, Family ID, individual ID, sex, and phenotype or covariate.
Logistic regression of the top 5 significant SNPsin BPD
Chromosome / SNP / bp / OR / p-value8 / rs6981968 / 13101644 / 0.3593 / 0.005264
9 / rs706119 / 33249777 / 0.3873 / 0.005608
21 / rs2117341 / 45126821 / 0.3686 / 0.006983
4 / rs222023 / 72855944 / 0.3641 / 0.007074
11 / rs511895 / 34444305 / 0.4083 / 0.007143
bp: SNP position (in base pairs)
OR: odds ratio
In this logistic regression, where admixture proportions were used, the p-values of the two most significant SNPs found in the AA_BPD, rs3771150 and rs3771171, were 0.04324 and 0.08793, respectively. These two SNPs were found to be the most significant SNPs when the AA set of subjects with and without BPD was studied.
Genotype counts in AA and CA subjects with and without BPD
AA – Marker rs3771150
BPD / No BPDTT / 1 / 0
CT / 11 / 19
CC / 5 / 79
AA – Marker rs3771171
BPD / No BPDGG / 1 / 0
GA / 10 / 18
AA / 5 / 80
CA – Marker rs3771150
BPD / No BPDTT / 11 / 32
CT / 45 / 196
CC / 97 / 300
CA – Marker rs3771171
BPD / No BPDGG / 9 / 29
GA / 47 / 201
AA / 96 / 298
List of genes for which SNPs were selected for study
Gene ID / Symbol / Gene name10 / NAT2 / N-acetyltransferase 2 (arylamine N-acetyltransferase)
12 / SERPINA3 / serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3
26 / ABP1 / amiloride binding protein 1 (amine oxidase (copper-containing))
70 / ACTC / actin, alpha, cardiac muscle
72 / ACTG2 / actin, gamma 2, smooth muscle, enteric
133 / ADM / adrenomedullin
136 / ADORA2B / adenosine A2b receptor
154 / ADRB2 / adrenergic, beta-2-, receptor, surface
197 / AHSG / alpha-2-HS-glycoprotein
207 / AKT1 / v-akt murine thymoma viral oncogene homolog 1
239 / ALOX12 / arachidonate 12-lipoxygenase
240 / ALOX5 / arachidonate 5-lipoxygenase
241 / ALOX5AP / arachidonate 5-lipoxygenase-activating protein
351 / APP / amyloid beta (A4) precursor protein (protease nexin-II, Alzheimer disease)
356 / FASLG / Fas ligand (TNF superfamily, member 6)
358 / AQP1 / aquaporin 1 (channel-forming integral protein, 28kDa)
360 / AQP3 / aquaporin 3
374 / AREG / amphiregulin (schwannoma-derived growth factor)
467 / ATF3 / activating transcription factor 3
475 / ATOX1 / ATX1 antioxidant protein 1 homolog (yeast)
487 / ATP2A1 / ATPase, Ca++ transporting, cardiac muscle, fast twitch 1
573 / BAG1 / BCL2-associated athanogene
578 / BAK1 / BCL2-antagonist/killer 1
581 / BAX / BCL2-associated X protein
595 / CCND1 / cyclin D1 (PRAD1: parathyroid adenomatosis 1)
596 / BCL2 / B-cell CLL/lymphoma 2
623 / BDKRB1 / bradykinin receptor B1
633 / BGN / biglycan
671 / BPI / bactericidal/permeability-increasing protein
677 / ZFP36L1 / zinc finger protein 36, C3H type-like 1
682 / BSG / basigin (OK blood group)
708 / C1QBP / complement component 1, q subcomponent binding protein
712 / C1QA / complement component 1, q subcomponent, alpha polypeptide
713 / C1QB / complement component 1, q subcomponent, beta polypeptide
718 / C3 / complement component 3
719 / C3AR1 / complement component 3a receptor 1
720 / C4A / complement component 4A
721 / C4B / complement component 4B
722 / C4BPA / complement component 4 binding protein, alpha
727 / C5 / complement component 5
728 / C5R1 / complement component 5 receptor 1 (C5a ligand)
729 / C6 / complement component 6
730 / C7 / complement component 7
731 / C8A / complement component 8, alpha polypeptide
732 / C8B / complement component 8, beta polypeptide
733 / C8G / complement component 8, gamma polypeptide
776 / CACNA1D / calcium channel, voltage-dependent, L type, alpha 1D subunit
808 / CALM3 / calmodulin 3 (phosphorylase kinase, delta)
820 / CAMP / cathelicidin antimicrobial peptide
822 / CAPG / capping protein (actin filament), gelsolin-like
834 / CASP1 / caspase 1, apoptosis-related cysteine protease (interleukin 1, beta, convertase)
847 / CAT / catalase
857 / CAV1 / caveolin 1, caveolae protein, 22kDa
894 / CCND2 / cyclin D2
900 / CCNG1 / cyclin G1
929 / CD14 / CD14 antigen
942 / CD86 / CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)
949 / SCARB1 / scavenger receptor class B, member 1
950 / SCARB2 / scavenger receptor class B, member 2
960 / CD44 / CD44 antigen (homing function and Indian blood group system)
998 / CDC42 / cell division cycle 42 (GTP binding protein, 25kDa)
999 / CDH1 / cadherin 1, type 1, E-cadherin (epithelial)
1003 / CDH5 / cadherin 5, type 2, VE-cadherin (vascular epithelium)
1026 / CDKN1A / cyclin-dependent kinase inhibitor 1A (p21, Cip1)
1052 / CEBPD / CCAAT/enhancer binding protein (C/EBP), delta
1072 / CFL1 / cofilin 1 (non-muscle)
1075 / CTSC / cathepsin C
1109 / AKR1C4 / aldo-keto reductase family 1,member C4( 3a hydroxysteroid dehydrogenase)
1159 / CKMT1 / creatine kinase, mitochondrial 1 (ubiquitous)
1179 / CLCA1 / chloride channel, calcium activated, family member 1
1191 / CLU / clusterin (complement lysis inhibitor, SP-40,40, sulfated glycoprotein 2, testosterone-repressed prostate message 2, apolipoprotein J)
1215 / CMA1 / chymase 1, mast cell
1230 / CCR1 / chemokine (C-C motif) receptor 1
1231 / CCR2 / chemokine (C-C motif) receptor 2
1234 / CCR5 / chemokine (C-C motif) receptor 5
1235 / CCR6 / chemokine (C-C motif) receptor 6
1240 / CMKLR1 / chemokine-like receptor 1
1277 / COL1A1 / collagen, type I, alpha 1
1280 / COL2A1 / collagen, type II, alpha 1 (primary osteoarthritis, spondyloepiphyseal dysplasia, congenital)
1291 / COL6A1 / collagen, type VI, alpha 1
1359 / CPA3 / carboxypeptidase A3 (mast cell)
1361 / CPB2 / carboxypeptidase B2 (plasma, carboxypeptidase U)
1380 / CR2 / complement component (3d/Epstein Barr virus) receptor 2
1385 / CREB1 / cAMP responsive element binding protein 1
1435 / CSF1 / colony stimulating factor 1 (macrophage)
1436 / CSF1R / colony stimulating factor 1 receptor, formerly McDonough feline sarcoma viral (v-fms) oncogene homolog
1437 / CSF2 / colony stimulating factor 2 (granulocyte-macrophage)
1438 / CSF2RA / colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)
1439 / CSF2RB / colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)
1457 / CSNK2A1 / casein kinase 2, alpha 1 polypeptide
1471 / CST3 / cystatin C (amyloid angiopathy and cerebral hemorrhage)
1499 / CTNNB1 / catenin (cadherin-associated protein), beta 1, 88kDa
1508 / CTSB / cathepsin B
1509 / CTSD / cathepsin D (lysosomal aspartyl protease)
1512 / CTSH / cathepsin H
1514 / CTSL / cathepsin L
1528 / CYB5 / cytochrome b-5
1554 / CYP2B / cytochrome P450, family 2, subfamily B
1555 / CYP2B6 / cytochrome P450, family 2, subfamily B, polypeptide 6
1565 / CYP2D6 / cytochrome P450, family 2, subfamily D, polypeptide 6
1572 / CYP2F1 / cytochrome P450, family 2, subfamily F, polypeptide 1
1601 / DAB2 / disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila)
1604 / DAF / decay accelerating factor for complement (CD55, Cromer blood group system)
1605 / DAG1 / dystroglycan 1 (dystrophin-associated glycoprotein 1)
1634 / DCN / decorin
1636 / ACE / angiotensin I converting enzyme (peptidyl-dipeptidase A) 1
1649 / DDIT3 / DNA-damage-inducible transcript 3
1670 / DEFA5 / defensin, alpha 5, Paneth cell-specific
1672 / DEFB1 / defensin, beta 1
1673 / DEFB4 / defensin, beta 4
1675 / DF / D component of complement (adipsin)
1803 / DPP4 / dipeptidylpeptidase 4 (CD26, adenosine deaminase complexing protein 2)
1839 / HBEGF / heparin-binding EGF-like growth factor
1843 / DUSP1 / dual specificity phosphatase 1
1889 / ECE1 / endothelin converting enzyme 1
1901 / EDG1 / endothelial differentiation, sphingolipid G-protein-coupled receptor, 1
1902 / EDG2 / endothelial differentiation, lysophosphatidic acid G-protein-coupled receptor, 2
1906 / EDN1 / endothelin 1
1909 / EDNRA / endothelin receptor type A
1910 / EDNRB / endothelin receptor type B
1947 / EFNB1 / ephrin-B1
1950 / EGF / epidermal growth factor (beta-urogastrone)
1956 / EGFR / epidermal growth factor receptor (erythroblastic leukemia viral (v-erb-b) oncogene homolog, avian)
1958 / EGR1 / early growth response 1
1959 / EGR2 / early growth response 2 (Krox-20 homolog, Drosophila)
1977 / EIF4E / eukaryotic translation initiation factor 4E
1979 / EIF4EBP2 / eukaryotic translation initiation factor 4E binding protein 2
2004 / ELK3 / ELK3, ETS-domain protein (SRF accessory protein 2)
2017 / CTTN / cortactin
2022 / ENG / endoglin (Osler-Rendu-Weber syndrome 1)
2030 / SLC29A1 / solute carrier family 29 (nucleoside transporters), member 1
2034 / EPAS1 / endothelial PAS domain protein 1
2052 / EPHX1 / epoxide hydrolase 1, microsomal (xenobiotic)
2059 / EPS8 / epidermal growth factor receptor pathway substrate 8
2149 / F2R / coagulation factor II (thrombin) receptor
2152 / F3 / coagulation factor III (thromboplastin, tissue factor)
2203 / FBP1 / fructose-1,6-bisphosphatase 1
2208 / FCER2 / Fc fragment of IgE, low affinity II, receptor for (CD23A)
2212 / FCGR2A / Fc fragment of IgG, low affinity IIa, receptor for (CD32)
2213 / FCGR2B / Fc fragment of IgG, low affinity IIb, receptor for (CD32)
2243 / FGA / fibrinogen, A alpha polypeptide
2248 / FGF3 / fibroblast growth factor 3 (murine mammary tumor virus integration site (v-int-2) oncogene homolog)
2252 / FGF7 / fibroblast growth factor 7 (keratinocyte growth factor)
2257 / FGF12 / fibroblast growth factor 12
2264 / FGFR4 / fibroblast growth factor receptor 4
2266 / FGG / fibrinogen, gamma polypeptide
2273 / FHL1 / four and a half LIM domains 1
2305 / FOXM1 / forkhead box M1
2335 / FN1 / fibronectin 1
2353 / FOS / v-fos FBJ murine osteosarcoma viral oncogene homolog
2532 / FY / Duffy blood group
2621 / GAS6 / growth arrest-specific 6
2638 / GC / group-specific component (vitamin D binding protein)
2675 / GFRA2 / GDNF family receptor alpha 2 (RET ligand 2)
2701 / GJA4 / gap junction protein, alpha 4, 37kDa (connexin 37)
2729 / GCLC / glutamate-cysteine ligase, catalytic subunit
2740 / GLP1R / glucagon-like peptide 1 receptor
2775 / GNAO1 / guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O
2783 / GNB2 / guanine nucleotide binding protein (G protein), beta polypeptide 2
2819 / GPD1 / glycerol-3-phosphate dehydrogenase 1 (soluble)
2833 / CXCR3 / chemokine (C-X-C motif) receptor 3
2876 / GPX1 / glutathione peroxidase 1
2877 / GPX2 / glutathione peroxidase 2 (gastrointestinal)
2878 / GPX3 / glutathione peroxidase 3 (plasma)
2879 / GPX4 / glutathione peroxidase 4 (phospholipid hydroperoxidase)
2880 / GPX5 / glutathione peroxidase 5 (epididymal androgen-related protein)
2896 / GRN / granulin
2919 / CXCL1 / chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha)
2920 / CXCL2 / chemokine (C-X-C motif) ligand 2
2942 / GSTAP1 / glutathione S-transferase A pseudogene 1
2944 / GSTM1 / glutathione S-transferase M1
2946 / GSTM2 / glutathione S-transferase M2 (muscle)
2950 / GSTP1 / glutathione S-transferase pi
2974 / GUCY1B2 / guanylate cyclase 1, soluble, beta 2
2982 / GUCY1A3 / guanylate cyclase 1, soluble, alpha 3
2983 / GUCY1B3 / guanylate cyclase 1, soluble, beta 3
3004 / GZMM / granzyme M (lymphocyte met-ase 1)
3055 / HCK / hemopoietic cell kinase
3075 / CFH / complement factor H
3091 / HIF1A / hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)
3099 / HK2 / hexokinase 2
3117 / HLA-DQA1 / major histocompatibility complex, class II, DQ alpha 1
3123 / HLA-DRB1 / major histocompatibility complex, class II, DR beta 1
3155 / HMGN1 / high-mobility group nucleosome binding domain 1
3162 / HMOX1 / heme oxygenase (decycling) 1
3164 / NR4A1 / nuclear receptor subfamily 4, group A, member 1
3202 / HOXA5 / homeo box A5
3215 / HOXB5 / homeo box B5
3263 / HPX / hemopexin
3290 / HSD11B1 / hydroxysteroid (11-beta) dehydrogenase 1
3303 / HSPA1A / heat shock 70kDa protein 1A
3320 / HSPCA / heat shock 90kDa protein 1, alpha
3326 / HSPCB / heat shock 90kDa protein 1, beta
3371 / TNC / tenascin C (hexabrachion)
3383 / ICAM1 / intercellular adhesion molecule 1 (CD54), human rhinovirus receptor
3384 / ICAM2 / intercellular adhesion molecule 2
3428 / IFI16 / interferon, gamma-inducible protein 16
3455 / IFNAR2 / interferon (alpha, beta and omega) receptor 2
3456 / IFNB1 / interferon, beta 1, fibroblast
3458 / IFNG / interferon, gamma
3460 / IFNGR2 / interferon gamma receptor 2 (interferon gamma transducer 1)
3479 / IGF1 / insulin-like growth factor 1 (somatomedin C)
3480 / IGF1R / insulin-like growth factor 1 receptor
3482 / IGF2R / insulin-like growth factor 2 receptor
3487 / IGFBP4 / insulin-like growth factor binding protein 4
3489 / IGFBP6 / insulin-like growth factor binding protein 6
3553 / IL1B / interleukin 1, beta
3557 / IL1RN / interleukin 1 receptor antagonist
3561 / IL2RG / interleukin 2 receptor, gamma (severe combined immunodeficiency)
3563 / IL3RA / interleukin 3 receptor, alpha (low affinity)
3565 / IL4 / interleukin 4
3567 / IL5 / interleukin 5 (colony-stimulating factor, eosinophil)
3569 / IL6 / interleukin 6 (interferon, beta 2)
3570 / IL6R / interleukin 6 receptor
3572 / IL6ST / interleukin 6 signal transducer (gp130, oncostatin M receptor)
3574 / IL7 / interleukin 7
3576 / IL8 / interleukin 8
3577 / IL8RA / interleukin 8 receptor, alpha
3578 / IL9 / interleukin 9
3579 / IL8RB / interleukin 8 receptor, beta
3586 / IL10 / interleukin 10
3592 / IL12A / interleukin 12A (natural killer cell stimulatory factor 1, cytotoxic lymphocyte maturation factor 1, p35)
3593 / IL12B / interleukin 12B (natural killer cell stimulatory factor 2, cytotoxic lymphocyte maturation factor 2, p40)
3596 / IL13 / interleukin 13
3597 / IL13RA1 / interleukin 13 receptor, alpha 1
3598 / IL13RA2 / interleukin 13 receptor, alpha 2
3600 / IL15 / interleukin 15
3606 / IL18 / interleukin 18 (interferon-gamma-inducing factor)
3611 / ILK / integrin-linked kinase
3623 / INHA / inhibin, alpha
3654 / IRAK1 / interleukin-1 receptor-associated kinase 1
3656 / IRAK2 / interleukin-1 receptor-associated kinase 2
3659 / IRF1 / interferon regulatory factor 1
3660 / IRF2 / interferon regulatory factor 2
3674 / ITGA2B / integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41B)
3684 / ITGAM / integrin, alpha M (complement component receptor 3, alpha; CD11b (p170), macrophage antigen alpha polypeptide)
3688 / ITGB1 / integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)
3689 / ITGB2 / integrin, beta 2 (antigen CD18 (p95), lymphocyte function-associated antigen 1; macrophage antigen 1 (mac-1) beta subunit)
3690 / ITGB3 / integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)
3725 / JUN / v-jun sarcoma virus 17 oncogene homolog (avian)
3726 / JUNB / jun B proto-oncogene
3777 / KCNK3 / potassium channel, subfamily K, member 3(TWIK-related acid-sensitive K+ channel )
3791 / KDR / kinase insert domain receptor (a type III receptor tyrosine kinase)
3815 / KIT / v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog
3856 / KRT8 / keratin 8
3875 / KRT18 / keratin 18
3880 / KRT19 / keratin 19
3911 / LAMA5 / laminin, alpha 5
3915 / LAMC1 / laminin, gamma 1 (formerly LAMB2)
3929 / LBP / lipopolysaccharide binding protein
3934 / LCN2 / lipocalin 2 (oncogene 24p3)
3958 / LGALS3 / lectin, galactoside-binding, soluble, 3 (galectin 3)
3976 / LIF / leukemia inhibitory factor (cholinergic differentiation factor)
3998 / LMAN1 / lectin, mannose-binding, 1
4055 / LTBR / lymphotoxin beta receptor (TNFR superfamily, member 3)
4064 / LY64 / lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)
4082 / MARCKS / myristoylated alanine-rich protein kinase C substrate
4087 / SMAD2 / SMAD, mothers against DPP homolog 2 (Drosophila)
4137 / MAPT / microtubule-associated protein tau
4153 / MBL2 / mannose-binding lectin (protein C) 2, soluble (opsonic defect)
4170 / MCL1 / myeloid cell leukemia sequence 1 (BCL2-related)
4193 / MDM2 / Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse)
4223 / MEOX2 / mesenchyme homeo box 2 (growth arrest-specific homeo box)(Gax protein)
4255 / MGMT / O-6-methylguanine-DNA methyltransferase
4256 / MGP / matrix Gla protein
4257 / MGST1 / microsomal glutathione S-transferase 1
4282 / MIF / macrophage migration inhibitory factor (glycosylation-inhibiting factor)
4312 / MMP1 / matrix metalloproteinase 1 (interstitial collagenase)
4313 / MMP2 / matrix metalloproteinase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)
4318 / MMP9 / matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)
4321 / MMP12 / matrix metalloproteinase 12 (macrophage elastase)
4489 / MT1A / metallothionein 1A (functional)
4490 / MT1B / metallothionein 1B (functional)
4502 / MT2A / metallothionein 2A
4583 / MUC2 / mucin 2, intestinal/tracheal
4586 / MUC5AC / mucin 5, subtypes A and C, tracheobronchial/gastric
4589 / MUC7 / mucin 7, salivary
4592 / MUC1 / mucin 1, transmembrane
4604 / MYBPC1 / myosin binding protein C, slow type
4609 / MYC / v-myc myelocytomatosis viral oncogene homolog (avian)
4615 / MYD88 / myeloid differentiation primary response gene (88)
4621 / MYH3 / myosin, heavy polypeptide 3, skeletal muscle, embryonic
4625 / MYH7 / myosin, heavy polypeptide 7, cardiac muscle, beta
4626 / MYH8 / myosin, heavy polypeptide 8, skeletal muscle, perinatal
4632 / MYL1 / myosin, light polypeptide 1, alkali; skeletal, fast
4633 / MYL2 / myosin light chain 2myosin, light polypeptide 2, regulatory, cardiac, slow
4635 / MYL4 / myosin, light polypeptide 4, alkali; atrial, embryonic
4638 / MYLK / myosin, light polypeptide kinase
4654 / MYOD1 / myogenic factor 3
4697 / NDUFA4 / NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa
4780 / NFE2L2 / nuclear factor (erythroid-derived 2)-like 2
4784 / NFIX / nuclear factor I/X (CCAAT-binding transcription factor)
4790 / NFKB1 / nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 (p105)
4791 / NFKB2 / nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100)
4792 / NFKBIA / nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha
4803 / NGFB / nerve growth factor, beta polypeptide
4804 / NGFR / nerve growth factor receptor (TNFR superfamily, member 16)
4842 / NOS1 / nitric oxide synthase 1
4843 / NOS2A / nitric oxide synthase 2A (inducible, hepatocytes)
4846 / NOS3 / nitric oxide synthase 3 (endothelial cell)
4855 / NOTCH4 / Notch homolog 4 (Drosophila)
4878 / NPPA / natriuretic peptide precursor A
4900 / NRGN / neurogranin (protein kinase C substrate, RC3)
4953 / ODC1 / ornithine decarboxylase 1
4973 / OLR1 / oxidised low density lipoprotein (lectin-like) receptor 1
5027 / P2RX7 / purinergic receptor P2X, ligand-gated ion channel, 7
5052 / PRDX1 / peroxiredoxin 1
5054 / SERPINE1 / serine (or cysteine) proteinase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1
5055 / SERPINB2 / serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 2
5068 / PAP / pancreatitis-associated protein
5133 / PDCD1 / programmed cell death 1
5141 / PDE4A / phosphodiesterase 4A, cAMP-specific (phosphodiesterase E2 dunce homolog, Drosophila)
5154 / PDGFA / platelet-derived growth factor alpha polypeptide
5156 / PDGFRA / platelet-derived growth factor receptor, alpha polypeptide
5169 / ENPP3 / ectonucleotide pyrophosphatase/phosphodiesterase 3
5175 / PECAM1 / platelet/endothelial cell adhesion molecule (CD31 antigen)
5176 / SERPINF1 / serine (or cysteine) proteinase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1
5243 / ABCB1 / ATP-binding cassette, sub-family B (MDR/TAP), member 1
5265 / SERPINA1 / serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin),member 1
5266 / PI3 / protease inhibitor 3, skin-derived (SKALP)
5270 / SERPINE2 / serine (or cysteine) proteinase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2
5292 / PIM1 / pim-1 oncogene
5320 / PLA2G2A / phospholipase A2, group IIA (platelets, synovial fluid)
5322 / PLA2G5 / phospholipase A2, group V
5328 / PLAU / plasminogen activator, urokinase
5329 / PLAUR / plasminogen activator, urokinase receptor
5337 / PLD1 / phospholipase D1, phophatidylcholine-specific
5360 / PLTP / phospholipid transfer protein
5371 / PML / promyelocytic leukemia
5444 / PON1 / paraoxonase 1
5468 / PPARG / peroxisome proliferative activated receptor, gamma
5476 / PPGB / protective protein for beta-galactosidase (galactosialidosis)
5494 / PPM1A / protein phosphatase 1A (formerly 2C), magnesium-dependent, alpha isoform
5552 / PRG1 / proteoglycan 1, secretory granule
5580 / PRKCD / protein kinase C, delta
5584 / PRKCI / protein kinase C, iota (atypical protein kinase C)
5590 / PRKCZ / protein kinase C, zeta
5595 / MAPK3 / mitogen-activated protein kinase 3
5611 / DNAJC3 / DnaJ (Hsp40) homolog, subfamily C, member 3
5645 / PRSS2 / protease, serine, 2 (trypsin 2)
5648 / MASP1 / mannan-binding lectin serine protease 1 (C4/C2 activating component of Ra-reactive factor)
5650 / KLK7 / kallikrein 7 (chymotryptic, stratum corneum)
5664 / PSEN2 / presenilin 2 (Alzheimer disease 4)
5728 / PTEN / phosphatase and tensin homolog (mutated in multiple advanced cancers 1)
5729 / PTGDR / prostaglandin D2 receptor (DP)
5791 / PTPRE / protein tyrosine phosphatase, receptor type, E
5796 / PTPRK / protein tyrosine phosphatase, receptor type, K
5817 / PVR / poliovirus receptor (tumor-associated glycoprotein E4)
5862 / RAB2 / RAB2, member RAS oncogene family
5887 / RAD23B / RAD23 homolog B (S. cerevisiae)
5998 / RGS3 / regulator of G-protein signalling 3
6271 / S100A1 / S100 calcium binding protein A1
6279 / S100A8 / S100 calcium binding protein A8 (calgranulin A)
6280 / S100A9 / S100 calcium binding protein A9 (calgranulin B)
6281 / S100A10 / S100 calcium binding protein A10 (annexin II ligand, calpactin I, light polypeptide (p11))
6285 / S100B / S100 calcium binding protein, beta
6289 / SAA2 / serum amyloid A2
6319 / SCD / stearoyl-CoA desaturase (delta-9-desaturase)
6332 / SCN7A / sodium channel, voltage-gated, type VII, alpha
6347 / CCL2 / chemokine (C-C motif) ligand 2
6348 / CCL3 / chemokine (C-C motif) ligand 3
6351 / CCL4 / chemokine (C-C motif) ligand 4
6352 / CCL5 / chemokine (C-C motif) ligand 5
6354 / CCL7 / chemokine (C-C motif) ligand 7
6356 / CCL11 / chemokine (C-C motif) ligand 11
6366 / CCL21 / chemokine (C-C motif) ligand 21
6367 / CCL22 / chemokine (C-C motif) ligand 22
6369 / CCL24 / chemokine (C-C motif) ligand 24
6382 / SDC1 / syndecan 1
6404 / SELPLG / selectin P ligand
6414 / SEPP1 / selenoprotein P, plasma, 1
6435 / SFTPA1 / surfactant, pulmonary-associated protein A1
6436 / SFTPA2 / surfactant, pulmonary-associated protein A2
6439 / SFTPB / surfactant, pulmonary-associated protein B
6440 / SFTPC / surfactant, pulmonary-associated protein C
6441 / SFTPD / surfactant, pulmonary-associated protein D
6505 / SLC1A1 / solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1
6536 / SLC6A9 / solute carrier family 6 (neurotransmitter transporter, glycine), member 9
6578 / SLCO2A1 / solute carrier organic anion transporter family, member 2A1
6590 / SLPI / secretory leukocyte protease inhibitor (antileukoproteinase)
6647 / SOD1 / superoxide dismutase 1, soluble (amyotrophic lateral sclerosis 1 (adult))
6696 / SPP1 / secreted phosphoprotein 1 (osteopontin, bone sialoprotein I, early T-lymphocyte activation 1)
6772 / STAT1 / signal transducer and activator of transcription 1, 91kDa
6774 / STAT3 / signal transducer and activator of transcription 3 (acute-phase response factor)
6817 / SULT1A1 / sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1
6876 / TAGLN / transgelin
6885 / MAP3K7 / mitogen-activated protein kinase kinase kinase 7
6909 / TBX2 / T-box 2
6910 / TBX5 / T-box 5
6915 / TBXA2R / thromboxane A2 receptor
6926 / TBX3 / T-box 3 (ulnar mammary syndrome)
6927 / TCF1 / transcription factor 1, hepatic; LF-B1, hepatic nuclear factor (HNF1), albumin proximal factor
6929 / TCF3 / transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)
6943 / TCF21 / transcription factor 21
7001 / PRDX2 / peroxiredoxin 2
7002 / TDPX2 / thioredoxin-dependent peroxide reductase 2 (thiol-specific antioxidant 2, proliferation-associated gene B)
7018 / TF / transferrin
7025 / NR2F1 / nuclear receptor subfamily 2, group F, member 1
7036 / TNNI2 / troponin I, skeletal, fast
7037 / TFRC / transferrin receptor (p90, CD71)
7040 / TGFB1 / transforming growth factor, beta 1 (Camurati-Engelmann disease)
7042 / TGFB2 / transforming growth factor, beta 2
7043 / TGFB3 / transforming growth factor, beta 3
7046 / TGFBR1 / transforming growth factor, beta receptor I (activin A receptor type II-like kinase, 53kDa)
7048 / TGFBR2 / transforming growth factor, beta receptor II (70/80kDa)
7049 / TGFBR3 / transforming growth factor, beta receptor III (betaglycan, 300kDa)
7051 / TGM1 / transglutaminase 1 (K polypeptide epidermal type I, protein-glutamine-gamma-glutamyltransferase)
7056 / THBD / thrombomodulin
7057 / THBS1 / thrombospondin 1
7071 / KLF10 / Kruppel-like factor 10
7075 / TIE1 / tyrosine kinase with immunoglobulin-like and EGF-like domains 1
7076 / TIMP1 / tissue inhibitor of metalloproteinase 1 (erythroid potentiating activity, collagenase inhibitor)
7077 / TIMP2 / tissue inhibitor of metalloproteinase 2
7093 / TGFA / transforming growth factor, alpha
7096 / TLR1 / toll-like receptor 1
7097 / TLR2 / toll-like receptor 2
7098 / TLR3 / toll-like receptor 3
7099 / TLR4 / toll-like receptor 4
7100 / TLR5 / toll-like receptor 5
7114 / TMSB4X / thymosin, beta 4, X-linked
7124 / TNF / tumor necrosis factor (TNF superfamily, member 2)
7132 / TNFRSF1A / tumor necrosis factor receptor superfamily, member 1A
7133 / TNFRSF1B / tumor necrosis factor receptor superfamily, member 1B
7134 / TNNC1 / troponin C, slow
7157 / TP53 / tumor protein p53 (Li-Fraumeni syndrome)
7247 / TSN / Translin
7295 / TXN / thioredoxin
7356 / SCGB1A1 / secretoglobin, family 1A, member 1 (uteroglobin)
7422 / VEGF / vascular endothelial growth factor
7423 / VEGFB / vascular endothelial growth factor B
7424 / VEGFC / vascular endothelial growth factor C
7431 / VIM / vimentin
7448 / VTN / vitronectin (serum spreading factor, somatomedin B, complement S-protein)
7472 / WNT2 / wingless-type MMTV integration site family member 2
7481 / WNT11 / wingless-type MMTV integration site family, member 11
7498 / XDH / xanthine dehydrogenase
7538 / ZFP36 / zinc finger protein 36, C3H type, homolog (mouse)
7786 / MAP3K12 / mitogen-activated protein kinase kinase kinase 12
7791 / ZYX / zyxin
7832 / BTG2 / BTG family, member 2
7850 / IL1R2 / interleukin 1 receptor, type II
7852 / CXCR4 / chemokine (C-X-C motif) receptor 4
7941 / PLA2G7 / phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)
8013 / NR4A3 / nuclear receptor subfamily 4, group A, member 3
8061 / FOSL1 / FOS-like antigen 1
8295 / TRRAP / transformation/transcription domain-associated protein
8553 / BHLHB2 / basic helix-loop-helix domain containing, class B, 2
8650 / NUMB / numb homolog (Drosophila)
8651 / SOCS1 / suppressor of cytokine signaling 1
8654 / PDE5A / phosphodiesterase 5A, cGMP-specific
8655 / DNCL1 / dynein, cytoplasmic, light polypeptide 1
8726 / EED / embryonic ectoderm development
8728 / ADAM19 / a disintegrin and metalloproteinase domain 19 (meltrin beta)
8784 / TNFRSF18 / tumor necrosis factor receptor superfamily, member 18
8788 / DLK1 / delta-like 1 homolog (Drosophila)
8807 / IL18RAP / interleukin 18 receptor accessory protein
8808 / IL1RL2 / interleukin 1 receptor-like 2
8809 / IL18R1 / interleukin 18 receptor 1
8835 / SOCS2 / Suppressor of cytokines signaling protein 2
8877 / SPHK1 / sphingosine kinase 1
8993 / PGLYRP1 / peptidoglycan recognition protein 1
9021 / SOCS3 / Suppressor of cytokines signaling protein 3
9079 / LDB2 / LIM domain binding 2
9091 / PIGQ / phosphatidylinositol glycan, class Q
9123 / SLC16A3 / solute carrier family 16 (monocarboxylic acid transporters), member 3
9131 / PDCD8 / programmed cell death 8 (apoptosis-inducing factor)
9173 / IL1RL1 / interleukin 1 receptor-like 1
9220 / TIAF1 / TGFB1-induced anti-apoptotic factor 1
9261 / MAPKAPK2 / mitogen-activated protein kinase-activated protein kinase 2
9306 / SOCS6 / suppressor of cytokine signaling 6
9420 / CYP7B1 / cytochrome P450, family 7, subfamily B, polypeptide 1
9450 / LY86 / lymphocyte antigen 86
9496 / TBX4 / T-box 4
9518 / GDF15 / growth differentiation factor 15
9530 / BAG4 / BCL2-associated athanogene 4
9538 / EI24 / etoposide induced 2.4 mRNA
9588 / PRDX6 / peroxiredoxin 6
9655 / SOCS5 / suppressor of cytokine signaling 5
9934 / P2RY14 / purinergic receptor P2Y, G-protein coupled, 14
9943 / OXSR1 / oxidative-stress responsive 1
10062 / NR1H3 / nuclear receptor subfamily 1, group H, member 3
10068 / IL18BP / interleukin 18 binding protein
10135 / PBEF1 / pre-B-cell colony enhancing factor 1
10333 / TLR6 / toll-like receptor 6
10344 / CCL26 / chemokine (C-C motif) ligand 26
10365 / KLF2 / Kruppel-like factor 2 (lung)
10370 / CITED2 / Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
10392 / CARD4 / caspase recruitment domain family, member 4
10395 / DLC1 / deleted in liver cancer 1
10494 / STK25 / serine/threonine kinase 25 (STE20 homolog, yeast)
10516 / FBLN5 / fibulin 5
10549 / PRDX4 / peroxiredoxin 4
10859 / LILRB1 / leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 1
10935 / PRDX3 / peroxiredoxin 3
11005 / SPINK5 / serine protease inhibitor, Kazal type 5
11035 / RIPK3 / receptor-interacting serine-threonine kinase 3
11082 / ESM1 / endothelial cell-specific molecule 1
11213 / IRAK3 / interleukin-1 receptor-associated kinase 3
11251 / GPR44 / G protein-coupled receptor 44
11318 / ADMR / adrenomedullin receptor
22822 / PHLDA1 / pleckstrin homology-like domain, family A, member 1
22918 / C1QR1 / complement component 1, q subcomponent, receptor 1
23210 / PTDSR / phosphatidylserine receptor
23569 / PADI4 / peptidyl arginine deiminase, type IV
23643 / LY96 / lymphocyte antigen 96
23765 / IL17R / interleukin 17 receptor
25823 / TPSG1 / tryptase gamma 1
26525 / IL1F5 / interleukin 1 family, member 5 (delta)
27063 / ANKRD1 / ankyrin repeat domain 1 (cardiac muscle)
27151 / CPAMD8 / C3 and PZP-like, alpha-2-macroglobulin domain containing 8
27177 / IL1F8 / interleukin 1 family, member 8 (eta)
27178 / IL1F7 / interleukin 1 family, member 7 (zeta)
27179 / IL1F6 / interleukin 1 family, member 6 (epsilon)
27189 / IL17C / interleukin 17C
27297 / RCP9 / calcitonin gene-related peptide-receptor component protein
29968 / PSAT1 / phosphoserine aminotransferase 1
30835 / CD209 / CD209 antigen
50486 / G0S2 / putative lymphocyte G0/G1 switch gene
50943 / FOXP3 / forkhead box P3
51083 / GAL / galanin
51090 / TM4SF11 / transmembrane 4 superfamily member 11 (plasmolipin)
51162 / EGFL7 / EGF-like-domain, multiple 7
51284 / TLR7 / toll-like receptor 7
51311 / TLR8 / toll-like receptor 8
51514 / RAMP / RA-regulated nuclear matrix-associated protein
51561 / IL23A / interleukin 23, alpha subunit p19
53342 / IL17D / interleukin 17D
54106 / TLR9 / toll-like receptor 9
54210 / TREM1 / triggering receptor expressed on myeloid cells 1
54345 / SOX18 / SRY (sex determining region Y)-box 18
54472 / TOLLIP / toll interacting protein
56147 / PCDHA1 / protocadherin alpha 1
56300 / IL1F9 / interleukin 1 family, member 9
56829 / ZC3HAV1 / zinc finger CCCH type, antiviral 1
57716 / PRX / periaxin
64063 / PRSS22 / protease, serine, 22
64127 / CARD15 / caspase recruitment domain family, member 15
64218 / SEMA4A / sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
64405 / CDH22 / cadherin-like 22
64806 / IL17E / interleukin 17E
65108 / MARCKSL1 / MARCKS-like 1
80326 / WNT10A / wingless-type MMTV integration site family, member 10A
81793 / TLR10 / toll-like receptor 10
83595 / SOX7 / SRY (sex determining region Y)-box 7
84433 / CARD11 / caspase recruitment domain family, member 11
84639 / IL1F10 / interleukin 1 family, member 10 (theta)
85480 / TSLP / thymic stromal lymphopoietin
112744 / IL17F / interleukin 17F
117156 / SCGB3A2 / secretoglobin, family 3A, member 2
122809 / SOCS4 / suppressor of cytokine signaling 4
148022 / TRIF / TIR domain containing adaptor inducing interferon-beta
149233 / IL23R / interleukin 23 receptor
221357 / GSTA5 / glutathione S-transferase A5
257202 / GPX6 / glutathione peroxidase 6 (olfactory)
280823 / IL3 / interleukin 3 [colony-stimulating factor, multiple]
337987 / CCL12 / chemokine (C-C motif) ligand 12
390502 / SERPINA2 / serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 2
404544 / COX8B / cytochrome c oxidase, subunit 8B pseudogene
LD plot – rs3771150