Hq C2h4 Vs Air Down
Table 3. Up-regulated genes list of wt (Col-0) ethylene vs. wt (Col-0) air genes.
Locus Identifier / AnnotationAT1G01140 / CIPK9 (CBL-INTERACTING PROTEIN KINASE 9); kinase
AT1G01230 / ORMDL family protein
AT1G01240 / similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G46550.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48635.1)
AT1G01260 / basic helix-loop-helix (bHLH) family protein
AT1G01340 / ATCNGC10 (CYCLIC NUCLEOTIDE GATED CHANNEL 10); calmodulin binding / cyclic nucleotide binding / ion channel
AT1G01350;AT5G06420 / [AT1G01350, nucleic acid binding];[AT5G06420, zinc finger (CCCH-type/C3HC4-type RING finger) family protein]
AT1G01480 / ACS2 (1-Amino-cyclopropane-1-carboxylate synthase 2)
AT1G01490 / heavy-metal-associated domain-containing protein
AT1G01550 / BPS1 (BYPASS 1)
AT1G01560 / ATMPK11 (Arabidopsis thaliana MAP kinase 11); MAP kinase/ kinase
AT1G01640 / speckle-type POZ protein-related
AT1G01650 / peptidase
AT1G01720 / ATAF1 (Arabidopsis NAC domain containing protein 2); transcription factor
AT1G01725 / similar to unnamed protein product [Vitis vinifera] (GB:CAO39583.1)
AT1G01730 / similar to unnamed protein product [Vitis vinifera] (GB:CAO39582.1)
AT1G01770 / similar to hypothetical protein [Vitis vinifera] (GB:CAN74802.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39542.1); similar to hypothetical protein OsI_024980 [Oryza sativa (indica cultivar-group)] (GB:EAZ03748.1); contains InterPro domain Protein of unknown function DUF1446 (InterPro:IPR010839)
AT1G01780 / LIM domain-containing protein
AT1G01800 / short-chain dehydrogenase/reductase (SDR) family protein
AT1G01820 / PEX11C
AT1G01990 / similar to chloroplast lumen common family protein [Arabidopsis thaliana] (TAIR:AT2G37400.1)
AT1G02100 / leucine carboxyl methyltransferase family protein
AT1G02170 / LOL3 (LSD ONE LIKE 3); caspase/ cysteine-type endopeptidase
AT1G02220 / ANAC003 (Arabidopsis NAC domain containing protein 3); transcription factor
AT1G02260 / transmembrane protein, putative
AT1G02305 / cathepsin B-like cysteine protease, putative
AT1G02330 / similar to unnamed protein product [Vitis vinifera] (GB:CAO40200.1); contains InterPro domain Hepatocellular carcinoma-associated antigen 59 (InterPro:IPR010756)
AT1G02340 / HFR1 (LONG HYPOCOTYL IN FAR-RED); DNA binding / transcription factor
AT1G02400 / ATGA2OX6/DTA1 (GIBBERELLIN 2-OXIDASE 6); gibberellin 2-beta-dioxygenase
AT1G02470 / similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G02475.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40177.1); contains InterPro domain Streptomyces cyclase/dehydrase (InterPro:IPR005031)
AT1G02580 / MEA (MEDEA); transcription factor
AT1G02660 / lipase class 3 family protein
AT1G02680 / TAF13 (TBP-ASSOCIATED FACTOR 13); RNA polymerase II transcription factor
AT1G02750 / zinc ion binding
AT1G02816 / similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G02370.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40037.1); contains InterPro domain Protein of unknown function DUF538 (InterPro:IPR007493)
AT1G02840 / SR1 (splicing factor 2); RNA binding
AT1G02850 / glycosyl hydrolase family 1 protein
AT1G02860 / NLA (NITROGEN LIMITATION ADAPTATION); protein binding / zinc ion binding
AT1G02890 / AAA-type ATPase family protein
AT1G02930;AT1G02920 / [AT1G02930, ATGSTF6 (EARLY RESPONSIVE TO DEHYDRATION 11); glutathione transferase];[AT1G02920, ATGSTF7 (GLUTATHIONE S-TRANSFERASE 11); glutathione transferase]
AT1G02960 / similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G02965.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80011.1)
AT1G03060 / WD-40 repeat family protein / beige-related
AT1G03080 / kinase interacting family protein
AT1G03090 / MCCA (3-methylcrotonyl-CoA carboxylase 1)
AT1G03150 / GCN5-related N-acetyltransferase (GNAT) family protein
AT1G03210 / phenazine biosynthesis PhzC/PhzF family protein
AT1G03220;AT1G03230 / [AT1G03220, extracellular dermal glycoprotein, putative / EDGP, putative];[AT1G03230, extracellular dermal glycoprotein, putative / EDGP, putative]
AT1G03290 / similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G02880.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22500.1); contains InterPro domain UBA-like (InterPro:IPR009060)
AT1G03330 / small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative
AT1G03350 / BSD domain-containing protein
AT1G03370 / C2 domain-containing protein / GRAM domain-containing protein
AT1G03380 / AtATG18g (Arabidopsis thaliana homolog of yeast autophagy 18 (ATG18) g)
AT1G03470 / kinase interacting family protein
AT1G03520 / glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein
AT1G03550 / secretory carrier membrane protein (SCAMP) family protein
AT1G03610 / similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G03420.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24103.1); contains InterPro domain Protein of unknown function DUF789 (InterPro:IPR008507)
AT1G03660 / similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT1G03670.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23951.1); contains domain ANK REPEAT-CONTAINING (PTHR18958:SF80); contains domain ANKYRIN REPEAT-CONTAINING (PTHR18958)
AT1G03740 / protein kinase family protein
AT1G03850 / glutaredoxin family protein
AT1G03900 / ATNAP4 (ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 4)
AT1G04260 / MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7)
AT1G04300 / similar to meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G43560.1); similar to meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G43560.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO71320.1); contains InterPro domain MATH (InterPro:IPR002083); contains InterPro domain TRAF-like (InterPro:IPR008974); contains InterPro domain TRAF-type (InterPro:IPR013322)
AT1G04310 / ERS2 (ETHYLENE RESPONSE SENSOR 2); receptor
AT1G04400 / CRY2 (CRYPTOCHROME 2)
AT1G04620 / coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family
AT1G04750 / VAMP7B (VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B)
AT1G04780 / ankyrin repeat family protein
AT1G04830 / RabGAP/TBC domain-containing protein
AT1G04950 / TAFII59 (TBP-ASSOCIATED FACTOR 6); transcription initiation factor
AT1G04960 / similar to bZIP family transcription factor [Arabidopsis thaliana] (TAIR:AT1G27000.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73938.1); contains InterPro domain Protein of unknown function DUF1664 (InterPro:IPR012458)
AT1G04970 / lipid-binding serum glycoprotein family protein
AT1G04985 / similar to unnamed protein product [Vitis vinifera] (GB:CAO24071.1)
AT1G05000 / tyrosine specific protein phosphatase family protein
AT1G05010 / EFE (ETHYLENE FORMING ENZYME)
AT1G05160 / CYP88A3 (ENT-KAURENOIC ACID HYDROXYLASE 1); oxygen binding
AT1G05340 / similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G32210.1)
AT1G05380 / DNA binding
AT1G05410 / similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G22520.1); similar to CDPK adapter protein 1 [Mesembryanthemum crystallinum] (GB:AAK69758.1)
AT1G05520 / transport protein, putative
AT1G05560 / UGT1 (UDP-glucosyl transferase 75B1); UDP-glycosyltransferase/ transferase, transferring glycosyl groups
AT1G05575 / unknown protein
AT1G05680 / UDP-glucoronosyl/UDP-glucosyl transferase family protein
AT1G05790 / lipase class 3 family protein
AT1G05810 / ARA/Ara-1/AtRABA5e/AtRab11D (Arabidopsis Rab GTPase homolog A5e); GTP binding
AT1G05840 / aspartyl protease family protein
AT1G05890 / zinc finger protein-related
AT1G05960 / binding
AT1G06050 / similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G10750.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64823.1); contains InterPro domain Protein of unknown function DUF1336 (InterPro:IPR009769)
AT1G06060 / RanBPM-related
AT1G06110 / SKIP16 (SKP1/ASK-INTERACTING PROTEIN 16); protein binding
AT1G06160 / ethylene-responsive factor, putative
AT1G06180 / ATMYB13 (myb domain protein 13); DNA binding / transcription factor
AT1G06200 / serine-type peptidase/ signal peptidase
AT1G06230 / GTE4 (GLOBAL TRANSCRIPTION FACTOR GROUP E 4); DNA binding
AT1G06400 / ARA2 (Arabidopsis Rab GTPase homolog A1a); GTP binding
AT1G06570 / PDS1 (PHYTOENE DESATURATION 1)
AT1G06630 / F-box family protein
AT1G06700 / serine/threonine protein kinase, putative
AT1G06770 / zinc finger (C3HC4-type RING finger) family protein
AT1G06780 / GAUT6 (Galacturonosyltransferase 6); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups
AT1G06840 / leucine-rich repeat transmembrane protein kinase, putative
AT1G06870;AT2G30440 / [AT1G06870, signal peptidase, putative];[AT2G30440, chloroplast thylakoidal processing peptidase]
AT1G06890 / transporter-related
AT1G07000 / ATEXO70B2 (exocyst subunit EXO70 family protein B2); protein binding
AT1G07020 / similar to unnamed protein product [Vitis vinifera] (GB:CAO21378.1)
AT1G07040 / similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G27030.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41035.1)
AT1G07090 / similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G58500.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN60458.1); contains InterPro domain Protein of unknown function DUF640 (InterPro:IPR006936)
AT1G07170 / Identical to Uncharacterized protein At1g07170/At2g30000 [Arabidopsis Thaliana] (GB:O80873); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G30000.1); similar to Os04g0663300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054163.1); similar to unknown [Picea sitchensis] (GB:ABK20981.1); contains InterPro domain PHF5-like (InterPro:IPR005345)
AT1G07240 / UDP-glucoronosyl/UDP-glucosyl transferase family protein
AT1G07310 / C2 domain-containing protein
AT1G07390 / protein binding
AT1G07530 / scarecrow-like transcription factor 14 (SCL14)
AT1G07570 / APK1A (Arabidopsis protein kinase 1A); kinase
AT1G07640 / OBP2 (OBF BINDING PROTEIN 2); DNA binding / transcription factor
AT1G07650 / leucine-rich repeat transmembrane protein kinase, putative
AT1G07670;AT1G07810 / [AT1G07670, calcium-transporting ATPase];[AT1G07810, ECA1 (CALCIUM-TRANSPORTING ATPASE 1, ENDOPLASMIC RETICULUM-TYPE); calcium-transporting ATPase]
AT1G07870 / protein kinase family protein
AT1G08210 / aspartyl protease family protein
AT1G08230 / amino acid transporter family protein
AT1G08315 / armadillo/beta-catenin repeat family protein
AT1G08370 / DCP1 (DECAPPING 1); m7G(5')pppN diphosphatase/ protein homodimerization
AT1G08460 / HDA08 (histone deacetylase 8); histone deacetylase
AT1G08570 / thioredoxin family protein
AT1G08630 / THA1 (THREONINE ALDOLASE 1); aldehyde-lyase/ threonine aldolase
AT1G08680 / ZIGA4 (ARF GAP-LIKE ZINC FINGER-CONTAINING PROTEIN ZIGA4); DNA binding
AT1G08680 / ZIGA4 (ARF GAP-LIKE ZINC FINGER-CONTAINING PROTEIN ZIGA4); DNA binding
AT1G08720 / EDR1 (ENHANCED DISEASE RESISTANCE 1); kinase/ protein serine/threonine/tyrosine kinase
AT1G08920 / sugar transporter, putative
AT1G08930 / ERD6 (EARLY RESPONSE TO DEHYDRATION 6); carbohydrate transmembrane transporter/ sugar:hydrogen ion symporter
AT1G08940 / phosphoglycerate/bisphosphoglycerate mutase family protein
AT1G08980 / ATAMI1 (AMIDASE-LIKE PROTEIN 1); amidase
AT1G09010 / glycoside hydrolase family 2 protein
AT1G09070 / (AT)SRC2/SRC2 (SOYBEAN GENE REGULATED BY COLD-2); protein binding
AT1G09230 / RNA recognition motif (RRM)-containing protein
AT1G09240 / nicotianamine synthase, putative
AT1G09250 / transcription factor
AT1G09280 / similar to rhodanese-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G40760.1); similar to Os12g0563400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067036.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN64715.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17408.1); contains InterPro domain Protein of unknown function DUF341 (InterPro:IPR005645); contains InterPro domain Rhodanese-like (InterPro:IPR001763)
AT1G09380 / integral membrane family protein / nodulin MtN21-related
AT1G09415 / NIMIN-3 (NIM1-INTERACTING 3)
AT1G09420 / G6PD4 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 4); glucose-6-phosphate dehydrogenase
AT1G09430 / ACLA-3 (ATP-citrate lyase A-3)
AT1G09460 / glucan endo-1,3-beta-glucosidase-related
AT1G09480;AT1G09490 / [AT1G09480, cinnamyl-alcohol dehydrogenase family / CAD family];[AT1G09490, cinnamyl-alcohol dehydrogenase family / CAD family]
AT1G09500 / cinnamyl-alcohol dehydrogenase family / CAD family
AT1G09520 / similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT3G17460.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65744.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17348.1)
AT1G09530 / PAP3/PIF3/POC1 (PHYTOCHROME INTERACTING FACTOR 3); DNA binding / protein binding / transcription factor/ transcription regulator
AT1G09560 / GLP5 (GERMIN-LIKE PROTEIN 5); manganese ion binding / metal ion binding / nutrient reservoir
AT1G09570 / PHYA (PHYTOCHROME A); G-protein coupled photoreceptor/ signal transducer
AT1G09575 / similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G57610.2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G57610.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21275.1); contains InterPro domain Protein of unknown function DUF607 (InterPro:IPR006769)
AT1G09630 / ATRAB11C (ARABIDOPSIS RAB GTPASE HOMOLOG A2A); GTP binding
AT1G09730 / Ulp1 protease family protein
AT1G09740 / ethylene-responsive protein, putative
AT1G09770 / ATCDC5 (ARABIDOPSIS THALIANA HOMOLOG OF CDC5); DNA binding / transcription factor
AT1G09910 / lyase
AT1G09920 / TRAF-type zinc finger-related
AT1G09970 / leucine-rich repeat transmembrane protein kinase, putative
AT1G10050 / glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein
AT1G10060 / ATBCAT-1; branched-chain-amino-acid transaminase/ catalytic
AT1G10070 / ATBCAT-2; branched-chain-amino-acid transaminase/ catalytic
AT1G10120 / DNA binding / transcription factor
AT1G10140 / similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G58420.1); contains InterPro domain Uncharacterised conserved protein UCP031279 (InterPro:IPR016972)
AT1G10150 / ATPP2-A10 (Phloem protein 2-A10); carbohydrate binding
AT1G10170 / ATNFXL1; transcription factor
AT1G10340 / ankyrin repeat family protein
AT1G10410 / similar to CW14 [Arabidopsis thaliana] (TAIR:AT1G59650.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF98316.1); contains InterPro domain Protein of unknown function DUF1336 (InterPro:IPR009769)
AT1G10585 / transcription factor
AT1G10590 / DNA-binding protein-related
AT1G10610 / DNA binding / transcription factor
AT1G10660 / similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G62960.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64308.1)
AT1G10720 / BSD domain-containing protein
AT1G11050 / protein kinase family protein
AT1G11060 / similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G61030.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16922.1); contains domain gb def: Hypothetical protein T19D16.5 (PTHR22100:SF10); contains domain FAMILY NOT NAMED (PTHR22100)
AT1G11210 / similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G11220.1); similar to cotton fiber expressed protein 1 [Gossypium hirsutum] (GB:AAC33276.1); contains InterPro domain Protein of unknown function DUF761, plant (InterPro:IPR008480)
AT1G11240 / similar to hypothetical protein OsI_011255 [Oryza sativa (indica cultivar-group)] (GB:EAY90022.1); similar to Os03g0353500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050128.1); contains domain PTHR14577 (PTHR14577)
AT1G11260 / STP1 (SUGAR TRANSPORTER 1); carbohydrate transmembrane transporter/ sugar:hydrogen ion symporter
AT1G11270 / F-box family protein
AT1G11310 / MLO2 (MILDEW RESISTANCE LOCUS O 2); calmodulin binding
AT1G11360 / universal stress protein (USP) family protein
AT1G11380 / similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G05350.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABD32347.2); contains InterPro domain Protein of unknown function Cys-rich (InterPro:IPR006461)
AT1G11400 / PYM (PARTNER OF Y14-MAGO); protein binding
AT1G11480 / eukaryotic translation initiation factor-related
AT1G11530 / ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1); thiol-disulfide exchange intermediate
AT1G11910 / aspartyl protease family protein
AT1G12010 / 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative
AT1G12080 / contains domain PTHR22683 (PTHR22683)
AT1G12200 / flavin-containing monooxygenase family protein / FMO family protein
AT1G12230 / transaldolase, putative
AT1G12240 / ATBETAFRUCT4/VAC-INV (VACUOLAR INVERTASE); beta-fructofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds
AT1G12320 / similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G62840.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24498.1); contains InterPro domain Protein of unknown function DUF1442 (InterPro:IPR009902)
AT1G12350;AT5G02080 / [AT1G12350, ATCOAB (4-PHOSPHO-PANTO-THENOYLCYSTEINE SYNTHETASE); catalytic/ phosphopantothenate--cysteine ligase];[AT5G02080, DNA/panthothenate metabolism flavoprotein family protein]
AT1G12360 / KEU (KEULE); protein transporter
AT1G12390;AT1G12340 / [AT1G12390, cornichon family protein];[AT1G12340, similar to cornichon family protein [Arabidopsis thaliana] (TAIR:AT1G12390.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16964.1); contains InterPro domain Cornichon; (InterPro:IPR003377)]
AT1G12580 / PEPKR1 (PHOSPHOENOLPYRUVATE CARBOXYLASE-RELATED KINASE 1); kinase
AT1G12640 / membrane bound O-acyl transferase (MBOAT) family protein
AT1G12650 / similar to unnamed protein product [Vitis vinifera] (GB:CAO63667.1); contains InterPro domain Protein of unknown function DUF947 (InterPro:IPR009292)
AT1G12680 / PEPKR2 (PHOSPHOENOLPYRUVATE CARBOXYLASE-RELATED KINASE 2); kinase
AT1G12780 / UGE1 (UDP-D-GLUCOSE/UDP-D-GALACTOSE 4-EPIMERASE 1); UDP-glucose 4-epimerase/ protein dimerization
AT1G12790 / similar to unnamed protein product [Vitis vinifera] (GB:CAO44590.1); contains InterPro domain RuvA domain 2-like (InterPro:IPR010994)
AT1G12810 / proline-rich family protein
AT1G12850 / phosphoglycerate/bisphosphoglycerate mutase family protein
AT1G12910 / ATAN11 (ANTHOCYANIN11); nucleotide binding
AT1G12920;AT3G26618 / [AT1G12920, ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2); translation release factor];[AT3G26618, ERF1-3 (EUKARYOTIC RELEASE FACTOR 1-3); translation release factor]
AT1G13000 / similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G26440.2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G26440.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14680.1); contains InterPro domain Protein of unknown function DUF707 (InterPro:IPR007877)
AT1G13190 / RNA recognition motif (RRM)-containing protein
AT1G13195 / zinc finger (C3HC4-type RING finger) family protein
AT1G13210 / ACA.L (AUTOINHIBITED CA2+/ATPASE II); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism / calmodulin binding
AT1G13340 / similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G34220.2); similar to unknown [Carica papaya] (GB:ABS01355.1); contains InterPro domain Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061)