Genome-wide characterization and expression pattern of auxin response factor (ARF) gene family in soybean and common bean

Genes & Genomics Journal

Bao Le, Muhammad Amjad Nawaz, Hafiz MamoonRehman, Thu Le, Seung Hwan Yang, Kirill S. Golokhvast, Gyuhwa Chung*

*Corresponding author

Department of Biotechnology, Chonnam National University, Yeosu, Chonnam 59626, Republic of Korea

E-mail address:

Online Resource 1.ARF gene in soybean (Glycine max) and common bean (Phaseolus vulgaris)

Gene / Gene locus / Gene length (bp) / CDS length (bp) / Protein length (aa) / Location / Domain / Group / No. exon
GmARF1 / Glyma.01G002100 / 6048 / 3315 / 1104 / Nuclear / DBD,ARF,CTD / III / 13
GmARF2 / Glyma.01G103500 / 4790 / 2079 / 692 / Nuclear / DBD,ARF,CTD / III / 11
GmARF3 / Glyma.02G239600 / 11093 / 2544 / 847 / Nuclear / DBD,ARF,CTD / III / 13
GmARF4 / Glyma.02G281700 / 9044 / 2691 / 896 / Nuclear / DBD,ARF,CTD / III / 14
GmARF5 / Glyma.03G070500 / 4799 / 2076 / 691 / Nuclear / DBD,ARF,CTD / III / 14
GmARF6 / Glyma.03G208800 / 10807 / 1773 / 590 / Nuclear / DBD,ARF / II / 11
GmARF7 / Glyma.03G258300 / 4764 / 1989 / 662 / Nuclear / DBD,ARF,CTD / III / 13
GmARF8 / Glyma.04G200600 / 5008 / 2532 / 843 / Nuclear / DBD,ARF / II / 11
GmARF9 / Glyma.04G254200 / 4355 / 1689 / 562 / Nuclear / DBD,ARF / II / 11
GmARF10 / Glyma.05G143800 / 6973 / 2601 / 866 / Nuclear / DBD,ARF / II / 11
GmARF11 / Glyma.05G200800 / 5305 / 2577 / 858 / Nuclear / DBD,ARF / II / 12
GmARF12 / Glyma.05G221300 / 6819 / 3300 / 1099 / Nuclear / DBD,ARF,CTD / V / 10
GmARF13 / Glyma.06G164900 / 5078 / 2532 / 843 / Nuclear / DBD,ARF,CTD / II / 12
GmARF14 / Glyma.07G054800 / 5201 / 2151 / 716 / Nuclear / DBD,ARF,CTD / II / 11
GmARF15 / Glyma.07G130400 / 5785 / 3333 / 1110 / Nuclear / DBD,ARF,CTD / I / 13
GmARF16 / Glyma.07G134800 / 5672 / 1995 / 664 / Nuclear / DBD,ARF / IV / 2
GmARF17 / Glyma.07G202200 / 5920 / 2130 / 709 / Nuclear / DBD,ARF,CTD / I / 14
GmARF18 / Glyma.07G272800 / 8114 / 2025 / 674 / Nuclear / DBD,ARF,CTD / I / 12
GmARF19 / Glyma.08G008100 / 5956 / 2556 / 851 / Nuclear / DBD,ARF,CTD / I / 13
GmARF20 / Glyma.08G027800 / 7296 / 3342 / 1113 / Nuclear / DBD,ARF,CTD / I / 11
GmARF21 / Glyma.08G100100 / 6901 / 2718 / 905 / Nuclear / DBD,ARF,CTD / I / 12
GmARF22 / Glyma.09G072200 / 8582 / 3378 / 1125 / Nuclear / DBD,ARF,CTD / I / 13
GmARF23 / Glyma.10G053500 / 5304 / 2103 / 700 / Nuclear / DBD,ARF,CTD / I / 11
GmARF24 / Glyma.10G210600 / 3553 / 1839 / 612 / Nuclear / DBD,ARF,CTD / I / 13
GmARF25 / Glyma.11G145500 / 3750 / 2094 / 697 / Nuclear / DBD,ARF,CTD / I / 13
GmARF26 / Glyma.11G204200 / 7828 / 2535 / 844 / Nuclear / DBD,ARF,CTD / I / 13
GmARF27 / Glyma.12G071000 / 7435 / 2379 / 792 / Nuclear / DBD,ARF,CTD / I / 13
GmARF28 / Glyma.12G076200 / 3832 / 2106 / 701 / Nuclear / DBD,ARF,CTD / I / 12
GmARF29 / Glyma.12G164100 / 6585 / 1998 / 665 / Nuclear / DBD,ARF,CTD / I / 13
GmARF30 / Glyma.12G171000 / 6571 / 2400 / 799 / Nuclear / DBD,ARF,CTD / I / 13
GmARF31 / Glyma.12G174100 / 3611 / 2103 / 700 / Nuclear / DBD,ARF,CTD / I / 14
GmARF32 / Glyma.13G084700 / 4517 / 1656 / 551 / Nuclear / DBD,ARF,CTD / I / 13
GmARF33 / Glyma.13G112600 / 7657 / 3396 / 1131 / Nuclear / DBD,ARF,CTD / IV / 3
GmARF34 / Glyma.13G140500 / 4041 / 1545 / 514 / Nuclear / DBD,ARF,CTD / I / 13
GmARF35 / Glyma.13G174000 / 5976 / 2145 / 714 / Nuclear / DBD,ARF / I / 13
GmARF36 / Glyma.13G221400 / 7055 / 2691 / 896 / Nuclear / DBD,ARF,CTD / III / 13
GmARF37 / Glyma.13G234200 / 6367 / 2211 / 736 / Nuclear / DBD,ARF,CTD / III / 13
GmARF38 / Glyma.13G325200 / 3194 / 2013 / 670 / Nuclear / DBD,ARF,CTD / IV / 4
GmARF39 / Glyma.13G328000 / 5058 / 1863 / 620 / Nuclear / DBD,ARF,CTD / IV / 4
GmARF40 / Glyma.14G032700 / 8612 / 2691 / 896 / Chloroplast / DBD,ARF,CTD / IV / 4
GmARF41 / Glyma.14G166500 / 4268 / 1560 / 519 / Nuclear / DBD,ARF,CTD / IV / 4
GmARF42 / Glyma.14G208500 / 8347 / 2532 / 843 / Chloroplast / DBD,ARF / IV / 2
GmARF43 / Glyma.14G217700 / 7090 / 2793 / 930 / Nuclear / DBD,ARF,CTD / III / 12
GmARF44 / Glyma.15G078800 / 4234 / 2163 / 720 / Nuclear / DBD,ARF,CTD / III / 13
GmARF45 / Glyma.15G091000 / 6866 / 2697 / 898 / Nuclear / DBD,ARF,CTD / III / 13
GmARF46 / Glyma.15G181000 / 8057 / 3369 / 1122 / Nuclear / DBD,ARF,CTD / III / 12
GmARF47 / Glyma.16G000300 / 6762 / 1998 / 665 / Nuclear / DBD,ARF,CTD / III / 13
GmARF48 / Glyma.16G023600 / 5198 / 2151 / 716 / Nuclear / DBD,ARF,CTD / III / 13
GmARF49 / Glyma.17G047100 / 8019 / 3411 / 1136 / Chloroplast / DBD,ARF / IV / 2
GmARF50 / Glyma.17G256500 / 5323 / 2802 / 933 / Nuclear / DBD,ARF,CTD / IV / 4
GmARF51 / Glyma.18G046800 / 7535 / 2526 / 841 / Nuclear / DBD,ARF / IV / 2
GmARF52 / Glyma.18G184500 / 6571 / 1995 / 664 / Nuclear / DBD,ARF / IV / 3
GmARF53 / Glyma.19G181900 / 4099 / 2103 / 700 / Nuclear / DBD,ARF / IV / 2
GmARF54 / Glyma.19G206100 / 11279 / 2034 / 677 / Nuclear / DBD,ARF,CTD / I / 12
GmARF55 / Glyma.20G180000 / 3228 / 1782 / 593 / Nuclear / DBD,ARF,CTD / V / 13
PvARF1 / Phvul.001G008200 / 5355 / 2814 / 937 / Nuclear / DBD,ARF,CTD / I / 13
PvARF2 / Phvul.002G233600 / 6881 / 2727 / 908 / Nuclear / DBD,ARF,CTD / I / 13
PvARF3 / Phvul.002G282200 / 5044 / 2529 / 842 / Nuclear / DBD,ARF,CTD / III / 13
PvARF4 / Phvul.003G075800 / 8638 / 1962 / 653 / Nuclear / DBD,ARF,CTD / III / 13
PvARF5 / Phvul.003G128800 / 7789 / 3492 / 1163 / Nuclear / DBD,ARF,CTD / I / 12
PvARF6 / Phvul.003G290200 / 5110 / 2121 / 706 / Nuclear / DBD,ARF / II / 10
PvARF7 / Phvul.004G177600 / 5919 / 3321 / 1106 / Nuclear / DBD,ARF,CTD / I / 13
PvARF8 / Phvul.005G134500 / 3350 / 2097 / 698 / Nuclear / DBD,ARF,CTD / IV / 3
PvARF9 / Phvul.005G136900 / 6144 / 2427 / 808 / Nuclear / DBD,ARF,CTD / II / 11
PvARF10 / Phvul.006G084200 / 7564 / 2526 / 841 / Nuclear / DBD,ARF,CTD / I / 13
PvARF11 / Phvul.006G114300 / 5004 / 2154 / 717 / Nuclear / DBD,ARF,CTD / III / 13
PvARF12 / Phvul.006G181200 / 6074 / 2205 / 734 / Nuclear / DBD,ARF / II / 10
PvARF13 / Phvul.006G221500 / 5941 / 1995 / 664 / Nuclear / DBD,ARF,CTD / III / 13
PvARF14 / Phvul.007G095000 / 3627 / 1827 / 608 / Nuclear / DBD,ARF / IV / 1
PvARF15 / Phvul.007G149000 / 3942 / 2127 / 708 / Nuclear / DBD,ARF,CTD / IV / 2
PvARF16 / Phvul.008G118400 / 5128 / 1980 / 659 / Nuclear / DBD,ARF,CTD / III / 12
PvARF17 / Phvul.008G168700 / 4182 / 1614 / 537 / Nuclear / DBD,ARF / IV / 1
PvARF18 / Phvul.008G197600 / 8157 / 2685 / 894 / Nuclear / DBD,ARF,CTD / I / 13
PvARF19 / Phvul.008G242400 / 11002 / 2535 / 844 / Nuclear / DBD,ARF,CTD / I / 13
PvARF20 / Phvul.009G026200 / 3841 / 1656 / 551 / Chloroplast / DBD,ARF / IV / 1
PvARF21 / Phvul.009G161900 / 5351 / 2532 / 843 / Nuclear / DBD,ARF,CTD / III / 13
PvARF22 / Phvul.009G224800 / 8235 / 3369 / 1122 / Nuclear / DBD,ARF,CTD / I / 12
PvARF23 / Phvul.010G011600 / 4603 / 2082 / 693 / Nuclear / DBD,ARF,CTD / III / 13
PvARF24 / Phvul.011G073600 / 6350 / 2379 / 792 / Nuclear / DBD,ARF,CTD / II / 11
PvARF25 / Phvul.011G080100 / 3664 / 2091 / 696 / Nuclear / DBD,ARF,CTD / IV / 3