Genbank/EMBL/DDBJ Accession HQ389540

GenBank/EMBL/DDBJ accession HQ389540

LOCUS bankit1398259 6791 bp RNA linear 10-OCT-2010
DEFINITION passionfruit mosaic virus (PafMV), complete genome.
ACCESSION 1398259
VERSION
KEYWORDS .
SOURCE passionfruit mosaic virus
ORGANISM passionfruit mosaic virus
Unclassified.
REFERENCE 1 (bases 1 to 6791)
AUTHORS Song,Y.S. and Ryu,K.H.
TITLE The complete genome sequence and genome structure of passionfruit
mosaic virus
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 6791)
AUTHORS Song,Y.S. and Ryu,K.H.
TITLE Direct Submission
JOURNAL Submitted (10-OCT-2010) Hoticultural Science, Seoul Women's
University, Seoul 139-774, Korea
COMMENT Bankit Comment: .
FEATURES Location/Qualifiers
source 1..6791
/organism="passionfruit mosaic virus"
/mol_type="genomic RNA"
/isolate="Passifloraincarnata L."
/country="USA"
/collected_by="A. A. ST HILL"
5'UTR 1..56
/note="5'UTR"
CDS 57..4892
/note="replicase; this protein is produced by readthrough
of a leaky amber stop codon at nucleotide 3359"
/codon_start=1
/product="184 kDa"
/translation="MTTISQLQQQTKERLVSDVRGPIQDLASRRVYDDAVNSLRVLDR
RPKINFNKLIPADACKLITESYPEFTITFTGTVCSSHGLAGGLRTLETEYLMMSVPYG
LPTYDIGGNFSLHMMKGRAYVHCCNPCMDLRDVARNESYRDNIQAYLSKFQRREPISW
TTRQFKGKPARALPEFQLDAFKRYDEEPNAVSCSSTFQHCSYSPPEGMDTYAVSVHSL
YDIPVAELGPALLRKRVKTLYACMHFSEALLLGSETGTLQKIGASFVVSGTKVTFGFF
DESTLLYVHDLSNVKEMMIRTWFVADTRFVYMKEFQARRVDTVFCKFQRVDTFRLNRT
VFKNNADALPDMIDDAWVRKRSTAMMSTEPIFKDAVSFNVWFPESKGKVLVPIFRGIF
ESGKVRKSTAVVDEDFVYTILNHIRTYPAKQLTYENVLSFVESIRSRVIVNGCNVRSE
WDVEKKILPDVAMTFLLITKLRQLQDQVVLERFDFKKTTIWGRIREVFLEYFSDVSGC
LFETMRSYGWIQVVDDKLRIITPEYHRTFTEELSLLYNRETKPEEVDVSDSLKMSNEI
LDVVDQLSETFDFMTFDTEKLNEFVKKFNVRPSVLKDVITALYNGECGVAFKDTSTPC
LQGMTVETKHAGVLKSDEASTSNVTVEEVKKTDDQFFSFAKFNGMNVKDVLASIDSST
AKTYEGEIEVRQMENYLDYLRASLSGSLSNLDKILRDYWSQSSETYKTYGVWDTRKKQ
WILDPPDRKHGWGLVLIGNESYVQCLQYDGDNAPVCAANWERVAVSNETKLFSNVQIL
NELMCVEKRVPDGDLVLVEGVPGCGKTKEILERCNFKSDLILTPGKEAAAMIRRRANN
GLGAEHATTYNVRTFDSFLINKIPVRFDTVWVDEGLMVHTGVIQFCRLKTNCKRMYVY
GDTKQIPFINRVMTFDYPESLRNLKLNSVETRSVTKRCPADITVFLNSQYQCHVLTEN
HTQRSVEATLLKGAAVLQPRQTTLNGKIVVFTQADKALLKKNGYIGVNTVHEVQGDTF
EEVSLVRATPTPVGIIAKDSPHVLVALSRHTSRLHYYTVVPDYVVSKIAELKTVSNFL
LDMHSFSGPSVLYQLQCKDIYIHNTKVFVPTPKTGSIFDLQEWYDNILPGNSTVLNDY
DGTVIRLFDNELNVQQCRLTLSKADPVPEIIRKNSKQFLRPVLRTGCEMPRTSGMIEN
LLAMIKRNFNSPELTGDVDIDVLSSSVVDRFFDVYVSVDLRTKFNSYSTLGCVDNLYI
SSHENFSDWLSKQQPDVVGQLANYDFIGIPPVDEYKHMIKKQPKLKGDCSIQSEYPAL
QTIVYHSKKINAIFGPIFKELTRRLIECFDSQRFMLYTRKTPADIEEFFNSVTGKNEM
DILELDVSKYDKSQDDFHFTLEMKIWERLGLDDYIKVLWQNGHKRTILSDYTAGIKTV
LYYQRKSGDVTTFIGNTVIIAACVCNILPIEKCIKASFCGDDSLVLMPKGLDYSEVQQ
KANLVWNFEAKLFMKKRHAYFCGKYVVFHDNGAVVFPDPLKLIGKLGSKNIQSWDHCE
DFRRSLCDVATNFGNCAYFSLLDEAVQENYKSAGSGCYAYRALWRFLTNPHLFQTLYF
N"
CDS 57..3359
/note="replicase"
/codon_start=1
/product="125 kDa"
/translation="MTTISQLQQQTKERLVSDVRGPIQDLASRRVYDDAVNSLRVLDR
RPKINFNKLIPADACKLITESYPEFTITFTGTVCSSHGLAGGLRTLETEYLMMSVPYG
LPTYDIGGNFSLHMMKGRAYVHCCNPCMDLRDVARNESYRDNIQAYLSKFQRREPISW
TTRQFKGKPARALPEFQLDAFKRYDEEPNAVSCSSTFQHCSYSPPEGMDTYAVSVHSL
YDIPVAELGPALLRKRVKTLYACMHFSEALLLGSETGTLQKIGASFVVSGTKVTFGFF
DESTLLYVHDLSNVKEMMIRTWFVADTRFVYMKEFQARRVDTVFCKFQRVDTFRLNRT
VFKNNADALPDMIDDAWVRKRSTAMMSTEPIFKDAVSFNVWFPESKGKVLVPIFRGIF
ESGKVRKSTAVVDEDFVYTILNHIRTYPAKQLTYENVLSFVESIRSRVIVNGCNVRSE
WDVEKKILPDVAMTFLLITKLRQLQDQVVLERFDFKKTTIWGRIREVFLEYFSDVSGC
LFETMRSYGWIQVVDDKLRIITPEYHRTFTEELSLLYNRETKPEEVDVSDSLKMSNEI
LDVVDQLSETFDFMTFDTEKLNEFVKKFNVRPSVLKDVITALYNGECGVAFKDTSTPC
LQGMTVETKHAGVLKSDEASTSNVTVEEVKKTDDQFFSFAKFNGMNVKDVLASIDSST
AKTYEGEIEVRQMENYLDYLRASLSGSLSNLDKILRDYWSQSSETYKTYGVWDTRKKQ
WILDPPDRKHGWGLVLIGNESYVQCLQYDGDNAPVCAANWERVAVSNETKLFSNVQIL
NELMCVEKRVPDGDLVLVEGVPGCGKTKEILERCNFKSDLILTPGKEAAAMIRRRANN
GLGAEHATTYNVRTFDSFLINKIPVRFDTVWVDEGLMVHTGVIQFCRLKTNCKRMYVY
GDTKQIPFINRVMTFDYPESLRNLKLNSVETRSVTKRCPADITVFLNSQYQCHVLTEN
HTQRSVEATLLKGAAVLQPRQTTLNGKIVVFTQADKALLKKNGYIGVNTVHEVQGDTF
EEVSLVRATPTPVGIIAKDSPHVLVALSRHTSRLHYYTVVPDYVVSKIAELKTVSNFL
LDMHSFSGPSVL"
CDS 5266..6198
/codon_start=1
/product="Movement protein (MP)"
/translation="MSLRAQNAQDVVPPLDYLNPSNFVKTQLLGLERLGLVKSPKKMC
ALMETDVVKISPRERTVFPLRLTEKIKDLGNYKYVMFLACVVSGRWHVPTTVKGEVFL
SLMDRRLTNERESVILTANAKPSVSEFQIRIHPRYSMVSSDAMQEPLELFVHVKGLQM
AEGFSPLSLEIAFCVVCCDVVIAKSLKMKILQNTDKFGNAEGEVGSEGLDDLLSGSNM
PSIRTSAFNSRRSVNANPKRVFKGKKGNVWSEAKDFAGVRRKKGVVESDMLTSNAEST
VSNYSTDQSDALSTGFSTDTSMAVGQLGRLQDTS"
CDS 6122..6613
/codon_start=1
/product="Coat protein (CP)"
/translation="MPYQPVSLQTLPWLSANWADYKTLLSVLRATSATSFQTQAGRDS
IRSQLAGCVSELVQVNVRFPERYLVYVNDPSISDVWGALLKATDTKNRIIEVDNERNP
SNNEIESVTRRVDDASVAIRINVERLLKLLGEVHGVYDRALFEQVSGLRWADDSAPAS
TSK"
3'UTR 6614..6791
/note="3'UTR"
BASE COUNT 1847 a 1329 c 1731 g 1884 t
ORIGIN
1 gaattaattttccaacaatacaattacaattacattgacaggaaaatacaattacaatga
61 caacaatttcacaactacaacaacaaacaaaagagaggctcgtctctgatgtcaggggtc
121 ctatacaggatctggcatcgagaagagtctacgatgacgcggtcaattcactacgtgtgc
181 ttgaccgccgtccaaaaatcaacttcaacaagttgattccagcagatgcgtgtaagctca
241 taacggagtcttaccccgagttcacaattaccttcacaggcaccgtttgctcctcgcacg
301 ggttggcggggggtctacgcactttagagactgaatatctcatgatgtcagtcccgtacg
361 gtcttcccacttatgacattggtggaaatttttcacttcatatgatgaagggaagggcgt
421 acgttcattgctgcaacccatgcatggatttgagagatgtcgctcgaaatgaatcatatc
481 gcgacaacattcaggcttatttatcgaagttccagcgccgggagcctatatcttggacca
541 ctcggcagttcaaaggtaagcctgccagagctctacctgagtttcagttagacgctttca
601 aaaggtacgatgaagaacccaatgctgtctcgtgttcatcgacctttcagcattgttctt
661 actcgccacctgaaggcatggatacttacgctgtttctgtccactcactgtacgacatac
721 cggtggcggagcttggaccagcattgctgaggaaaagggttaaaacgctctatgcgtgca
781 tgcacttttctgaagcgttgttgctaggttcggaaaccggtacgcttcaaaagattggtg
841 cttcgtttgtggtcagtgggaccaaagtcacattcgggttttttgatgagtctaccttgt
901 tgtacgttcatgatctctcgaacgtaaaggagatgatgatcaggacgtggttcgttgctg
961 acacacggttcgtttacatgaaggagtttcaagctcgacgtgtggacactgtgttctgta
1021 agttccaacgtgttgatactttcagactcaataggaccgtttttaaaaataacgctgacg
1081 ctctccctgatatgattgatgatgcatgggtgcgcaagcgttctacggcgatgatgtcga
1141 ctgagccgatttttaaagacgcggtgtccttcaacgtgtggtttccagagagtaaaggga
1201 aggtactcgttccgattttcaggggtatcttcgaatcagggaaggttcggaagtcgaccg
1261 ctgtggtcgacgaagatttcgtctacacgatactcaatcatatcagaacttaccccgcga
1321 aacaattgacttacgagaacgtactatcctttgtggagagtattcgctcgagagttattg
1381 tcaacgggtgtaatgtcagatcagaatgggatgtggagaagaaaattttgccagatgtgg
1441 ccatgacattcttgctgataacgaaattacggcagcttcaagatcaggtcgtactcgaaa
1501 ggttcgatttcaagaagactacaatatggggcaggattcgtgaagtgtttcttgagtatt
1561 tcagtgatgtgtccggctgtctattcgagacaatgagatcctacggttggatccaggtcg
1621 tcgatgacaaattacggataattacccctgaataccacagaacattcacggaggaactgt
1681 ctttactgtacaatcgagaaacaaagcccgaagaggttgacgtatctgattctttgaaga
1741 tgtcgaatgagatcctcgatgtcgtggaccagctgagtgaaacgttcgacttcatgacgt
1801 tcgacacagagaaattaaacgagttcgtgaagaagttcaatgtaagaccttctgtgctta
1861 aagatgtgatcactgccctgtacaacggggagtgcggcgtggccttcaaggacacatcca
1921 ctccttgcttgcagggtatgactgtggaaaccaaacatgctggggtattgaagtctgatg
1981 aggctagtacatctaacgtgaccgtggaagaggtgaagaagactgacgatcagttcttct
2041 ccttcgccaaattcaacgggatgaacgttaaagatgtcttagcttcaatcgatagctcca
2101 ccgcgaagacttacgagggagagattgaggtgcgacaaatggagaattatctggattact
2161 taagggcttcgctttcgggttccttgagtaacctcgataagatattgcgtgactactggt
2221 cacaatcaagcgaaacgtacaagacttacggtgtttgggacacacgtaagaaacagtgga
2281 ttcttgacccacccgacagaaaacatgggtggggtttggtgctgattgggaatgagagct
2341 atgtgcaatgcttacagtacgacggtgacaacgctccagtttgcgctgcaaactgggaac
2401 gcgtagccgtcagtaacgaaaccaaactcttttcaaacgtgcagatactcaatgagttaa
2461 tgtgcgtggagaaaagagttccggacggggacttggtgctagtggaaggagtgcctggtt
2521 gcgggaagacaaaggaaatccttgagaggtgcaattttaaatctgatttaattttaacac
2581 ctggaaaggaagcggctgcgatgattcgtcggagggcgaacaatggtttaggtgctgagc
2641 acgctacgacttataacgtcaggacgttcgattcgttcctcatcaacaagataccagtac
2701 ggtttgataccgtctgggttgatgaggggttgatggtccatactggtgttatacagttct
2761 gtcgtttgaaaacgaattgcaaaagaatgtatgtctacggcgatacaaagcaaattccgt
2821 ttatcaatagagtgatgacttttgattaccctgagtcactcaggaatctgaagttaaatt
2881 ctgtcgagacacggagcgtgacaaaaagatgtcctgctgacattacagtctttctcaatt
2941 cacagtaccagtgccatgtgcttacagagaaccacacacaacggtccgtggaggcgactt
3001 tactgaagggtgcggcggtattgcaaccgcggcagacaacacttaatggtaagatcgttg
3061 tgttcacacaagctgacaaggctctgctgaagaagaacgggtacattggtgtcaatactg
3121 tacatgaggtacaaggtgacacatttgaagaggtttcgctggttcgcgctacaccgacac
3181 ctgtcggtattatcgcgaaagattcacctcacgtcttagtggctctatcgagacacacaa
3241 gtcggttgcactattacacagtagtgcctgactatgttgtgtcaaagattgcggaactca
3301 agactgtgagcaactttttgttagatatgcatagttttagcggtcctagtgtgttatagc
3361 aattacagtgtaaagacatttatattcacaacaccaaagtttttgttcccacaccgaaga
3421 caggttctatttttgatttgcaagaatggtacgataacatactgccgggtaattcgactg
3481 tgctcaacgattatgatggcactgtgatacgtttgttcgataacgaattgaacgtccaac
3541 agtgccgattaacgttgagcaaggcggatcctgttcctgagataatcaggaaaaattcaa
3601 agcagtttctgcgaccggttttaagaacaggttgcgaaatgcctcgaacgagcggtatga
3661 ttgagaatcttcttgcgatgattaaaaggaacttcaattcaccggaactaacgggtgatg
3721 tggatatagatgttctgtcgtccagtgttgtagataggttttttgatgtttatgtcagtg
3781 tggatttacgtactaagtttaatagttattctactttagggtgtgttgataatctgtaca
3841 tatcgtcccacgagaattttagcgactggttaagcaaacaacaaccagatgtagtcggtc
3901 agctggcgaattacgatttcatcgggattccaccggttgatgaatacaagcacatgatca
3961 aaaagcagccgaaactcaaaggcgactgttccatacagtctgaatatccggcgctgcaaa
4021 cgattgtgtaccattcgaagaagataaacgctatttttggtccaatcttcaaggaactca
4081 cacgaagacttattgaatgcttcgactcacaaagattcatgctgtacactcggaaaaccc
4141 cagccgacattgaagaatttttcaattcggtcacgggaaaaaacgagatggacatcctgg
4201 agctcgatgtgagcaagtatgataaaagtcaggacgatttccatttcaccttggagatga
4261 agatatgggagcgtttaggcttagacgattacatcaaggttttgtggcagaatgggcata
4321 agaggactatactaagtgactacacagcaggaattaaaacagtgttatactatcagcgaa
4381 agagcggagacgtgactacgtttataggtaacactgtcataattgcggcttgtgtttgta
4441 atattttaccaatcgagaaatgcatcaaagcatctttctgcggtgacgacagtcttgttc
4501 taatgcccaagggcttagactattctgaagttcaacagaaagccaatttggtgtggaatt
4561 tcgaggcaaagttgtttatgaaaaagcggcacgcttacttctgtggtaagtatgttgttt
4621 ttcatgataacggtgcagtcgtttttcccgacccgttgaaactcatcgggaagctcggta
4681 gtaaaaatatacaatcatgggaccactgtgaagatttcaggcgtagtctttgcgatgtcg
4741 ctacaaattttggtaactgtgcgtatttttctttattggatgaggctgtccaggagaact
4801 ataagtctgcgggaagcggttgttatgcttatcgtgcgctttggcgattcttgaccaacc
4861 ctcatcttttccaaactttgtattttaattgattgatgtctctggtcggaaagtttgctc
4921 aatccttggggttctgcgatttactgttggttgacgctaacgtgcatcgtttaaccggtg
4981 aggagaaagtgattcagaagaccagtgagtatctacagttctttaatagtataattatta
5041 agtgttgtgctgtaaaaaccagtgggtgcgtttcatttgtccaagttcgtgtgtgctgtg
5101 tttcgtgtaggcgtaatagtttttgtacttttcgctgtccaggtgttaaggttgctgttt
5161 cacaacagcttgtttacccaggtgagtacgtactgcgtccgtggaaagctccaattccgt
5221 acacttataaaccagtggtttatctgaactgtacgaatttcgaacatgtcgctacgtgca
5281 cagaatgcgcaggatgtggtcccgccgctagactatctgaacccgagcaattttgtgaaa
5341 acacaattactgggtctggaaaggctgggtctggtgaagtcaccgaagaagatgtgcgct
5401 ttgatggagacggatgtggtgaagatatccccgagggaaaggacggtattcccgttgcgt
5461 ctcacggagaaaatcaaggatctgggtaactacaagtatgttatgtttctggcttgtgtg
5521 gtcagtggtagatggcatgtgcccacaactgttaaaggagaagtctttctgagtctcatg
5581 gataggaggttgacaaacgagcgtgagagtgttattctcactgccaatgccaaaccaagt
5641 gtcagtgagtttcagataagaattcacccgcggtattcgatggtctcgtcggatgcaatg
5701 caggaacctttggagttgtttgtgcatgtcaagggtctacagatggcggagggttttagt
5761 ccattatcattagagatagctttttgtgtcgtttgttgtgatgttgtgattgcaaaaagt
5821 ttaaaaatgaaaatattgcagaacacagacaaattcgggaatgcggaaggggaagttggt
5881 agcgaaggtttggacgacctgttatcaggtagtaacatgcctagcatacgaacttctgct
5941 ttcaattcgcgaaggagtgtgaatgcaaacccaaaaagagtttttaaggggaagaaaggg
6001 aatgtgtggagtgaggcaaaggattttgctggtgtaaggagaaagaaaggtgtggttgaa
6061 tcggatatgttgacttctaatgcggagtcgactgtttcgaattattcaactgaccaatct
6121 gatgccttatcaaccggtttctctacagacacttccatggctgtcggccaactgggccga
6181 ttacaagacacttcttagtgtcttaagggcgacttcggcaacgtcttttcagacgcaggc
6241 cggacgcgattctatacgttcacaattggctggatgtgtcagcgaactagttcaagttaa
6301 cgtaaggtttcccgaacgttacttggtctatgtcaatgatccatctatcagtgatgtgtg
6361 gggtgctcttttgaaggcgacggatacaaaaaatcgtataattgaggtggataacgagag
6421 gaacccgtcgaacaacgaaattgaatctgtcacacgacgtgtagatgatgcttctgtggc
6481 cattcgcattaatgtcgaacggttgctgaagttgcttggtgaggtgcacggtgtctacga
6541 ccgtgccttgtttgaacaagttagtggattgcggtgggctgatgattcagctcccgcgtc
6601 tacttcgaagtagcgtggcgcatacgagaatgcgtagtgtttatcccgttccactgaaat
6661 cgaaacgggtgatctgcataattgcagttgcttggctggatcaacgtaccgtgaggagag
6721 aaatcatacggtatgccgagtgttaaaaggttgaggggttcgaatccccccttaccccgg
6781 gtaggggccc a