Supplement. Complete ORF list
List of ORFs predicted on pRHL3 of Rhodococcus sp. RHA1.
pRHL3 ORFs / Start Coordinate (bp) / Stop Coordinate (bp) / Strand / Product Size (aa) / %Identitya / Gene Product Descriptionb / Closest OrganismaRHL3.1 / 921 / 655 / - / 89 / - / Hypothetical protein / -
RHL3.2 / 1274 / 921 / - / 118 / - / Hypothetical protein / -
RHL3.3 / 1675 / 1298 / - / 126 / 35 / Hypothetical protein / S. coelicolor
RHL3.4 / 2379 / 1675 / - / 235 / - / Hypothetical protein / -
RHL3.5 / 2650 / 3606 / + / 319 / - / Hypothetical protein / -
RHL3.6 / 4279 / 4536 / + / 86 / - / Hypothetical protein / -
RHL3.7 / 5290 / 4580 / - / 237 / - / Conserved hypothetical protein / -
RHL3.8 / 6642 / 5314 / - / 443 / - / Hypothetical protein / -
RHL3.9 / 6958 / 6725 / - / 78 / - / Hypothetical protein / -
RHL3.10 / 7749 / 7093 / - / 219 / - / Hypothetical protein / -
RHL3.11 / 7777 / 8565 / + / 263 / 22 / Putative PAPS reductase / Xylella fastidiosa
RHL3.12 / 9860 / 8610 / - / 417 / - / Hypothetical protein / -
RHL3.13 / 11842 / 10001 / - / 614 / 46 / Hypothetical protein / S. coelicolor
RHL3.14 / 12172 / 11930 / - / 81 / - / Hypothetical protein /some similarity with two-component histidine kinase / -
RHL3.15 / 13116 / 12187 / - / 310 / - / Conserved hypothetical protein / putative endonuclease / -
RHL3.16a / 13528 / 13815 / + / 96 / - / Hypothetical protein / methyl transferase / possible pseudogene / -
RHL3.16b / 13814 / 14131 / + / 106 / 20 / Hypothetical protein / possible pseudogene / C. equii (R. equi)
RHL3.17 / 14236 / 14535 / + / 100 / - / Hypothetical protein / -
RHL3.18 / 15185 / 14694 / - / 164 / 47 / Putative transcriptional regulator / S. coelicolor
RHL3.19 / 15297 / 15689 / + / 131 / 25 / Putative lysine permease / S. coelicolor
RHL3.20 / 18212 / 16677 / - / 512 / 34 / Putative AMP-dependent synthase / ligase / Bradyrhizobium japonicum
RHL3.21 / 19051 / 18266 / - / 262 / 23 / Putative dehydrogenase / S. capreolus
RHL3.22 / 20415 / 19051 / - / 455 / 41 / Putative dehydrogenase / Chlorobium tepidum
RHL3.23 / 21175 / 20411 / - / 255 / - / Hypothetical protein / -
RHL3.24 / 22119 / 21229 / - / 297 / 43 / Putative transposase / S. violaceoruber
RHL3.25 / 22466 / 22119 / - / 116 / 82 / Conserved transposase / R. sp I24
RHL3.26 / 23556 / 22516 / - / 347 / 29 / Putative dehydrogenase / P. aeruginosa
RHL3.27 / 24861 / 23596 / - / 422 / 34 / Putative transferase /dehydrogenase complex / Rhizobium meliloti (Sinorhizobium meliloti)
RHL3.28 / 25833 / 24877 / - / 319 / 51 / Putative dehydrogenase / B. halodurans
RHL3.29 / 26900 / 25869 / - / 344 / 36 / Putative dehydrogenase / Clostridium magnum
RHL3.30 / 28039 / 26900 / - / 380 / 46 / Putative acyl-CoA dehydrogenase / Rhizobium meliloti (Sinorhizobium meliloti)
RHL3.31 / 29071 / 28379 / - / 231 / 26 / Putative bacterial regulatory protein / TetR family / OceanoB. iheyensis
RHL3.32 / 29147 / 31054 / + / 636 / 22 / Hypothetical protein / S. avermitilis
RHL3.33 / 31074 / 31853 / + / 260 / 35 / Putative dehydratase / B. subtilis
RHL3.34 / 32395 / 33273 / + / 293 / 30 / Putative dehydrogenase / Neisseria meningitidis (serogroup B)
RHL3.35 / 33866 / 33447 / - / 140 / - / Hypothetical protein / -
RHL3.36 / 34389 / 33994 / - / 132 / - / Putative recombinase / integrase / -
RHL3.37 / 34679 / 35092 / + / 138 / 27 / Hypothetical protein / putative transposase / Micrococcus sp 28
RHL3.38 / 35916 / 35275 / - / 214 / 38 / Conserved hypothetical protein / S. coelicolor
RHL3.39 / 38488 / 35912 / - / 859 / 78 / Conserved hypothetical protein / M. tuberculosis and M. bovis BCG
RHL3.40 / 39012 / 39296 / + / 95 / - / Hypothetical protein / -
RHL3.41 / 40363 / 39539 / - / 275 / 50 / Conserved carveol dehydrogenase / R. erythropolis
RHL3.42 / 41024 / 42184 / + / 387 / 44 / Putative limonene monooxygenase / R. erythropolis
RHL3.43 / 42219 / 42332 / + / 38 / - / Hypothetical protein / -
RHL3.44 / 42464 / 42955 / + / 164 / 55 / Putative oxydoreductase / M. tuberculosis
RHL3.45 / 42976 / 44022 / + / 349 / 36 / Putative synthase / C. ammoniagenes (Brevibacterium ammoniagenes)
RHL3.46 / 44886 / 44254 / - / 211 / 20 / Hypothetical protein /putative transposase / R. erythropolis
RHL3.47 / 45264 / 44956 / - / 103 / - / Hypothetical protein / -
RHL3.48 / 46467 / 46003 / - / 155 / 40 / Conserved hypothetical protein / M. tuberculosis and M. bovis
RHL3.49 / 47391 / 46585 / - / 269 / 32 / Putative beta-lactamase / B. sp A24
RHL3.50 / 49473 / 47518 / - / 652 / 33 / Putative transcription factor / Brevibacterium sp HCU
RHL3.51 / 50747 / 52198 / + / 484 / 37 / Putative aldehyde dehydrogenase / S. coelicolor
RHL3.52 / 53317 / 52688 / - / 210 / - / Hypothetical protein / -
RHL3.53 / 53502 / 56768 / + / 1089 / 55 / Putative regulatory protein / R. erythropolis
RHL3.54 / 58289 / 57615 / - / 225 / 28 / Putative DeoR-type transcriptional regulator / Yersinia pestis
RHL3.55 / 58568 / 59461 / + / 298 / 67 / Conserved GND protein/ 6-phosphogluconate dehydrogenase / M. smegmatis
RHL3.56 / 59461 / 60462 / + / 334 / 85 / Conserved F420-dependent glucose-6-phosphate dehydrogenase / M. phlei
RHL3.57 / 60462 / 62114 / + / 551 / 67 / Conserved glucose-6-phosphate isomerase / M. tuberculosis and M. bovis
RHL3.58 / 62105 / 62557 / + / 118 / 46 / Putative regulatory protein / S. coelicolor
RHL3.59a / 63480 / 63989 / + / 170 / 31 / Putative transposase / possible pseudogene / S. coelicolor
RHL3.59b / 63956 / 64327 / + / 134 / 30 / Putative transposase / possible pseudogene / S. avermitilis
RHL3.60 / 65785 / 64430 / - / 452 / 43 / Conserved reductase / P. putida
RHL3.61 / 66164 / 65754 / - / 137 / 43 / Putative ferredoxin / Bradyrhizobium japonicum
RHL3.62 / 67411 / 66167 / - / 415 / 27 / Putative cytochrome P450 / S. avermitilis
RHL3.63 / 68101 / 68925 / + / 275 / 24 / Putative 3-hydroxyacyl CoA dehydrogenase / Bifidobacterium longum
RHL3.64 / 68989 / 69429 / + / 147 / - / Hypothetical protein / -
RHL3.65 / 70574 / 70368 / - / 69 / - / Hypothetical protein / -
RHL3.66 / 71454 / 70582 / - / 291 / - / Conserved hypothetical protein / possible endonuclease / -
RHL3.67 / 74241 / 71719 / - / 841 / 41 / Conserved hypothetical protein / serine protease / Agrobacterium tumefaciens (strain C58 / ATCC 33970)
RHL3.68 / 75311 / 74337 / - / 325 / 53 / AAA-family ATPase / Agrobacterium tumefaciens (strain C58 / ATCC 33970)
RHL3.69 / 76125 / 75532 / - / 198 / 35 / Hypothetical protein / putative meromycolate extension acyl carrier protein / M. tuberculosis and M. bovis
RHL3.70 / 77062 / 76121 / - / 314 / - / Hypothetical protein / -
RHL3.71 / 77321 / 77533 / + / 71 / - / Hypothetical protein / -
RHL3.72 / 78096 / 77821 / - / 92 / - / Hypothetical protein / -
RHL3.73 / 78145 / 78675 / + / 177 / - / Hypothetical protein / -
RHL3.74 / 78949 / 80127 / + / 393 / - / Hypothetical protein / -
RHL3.75 / 80334 / 80867 / + / 178 / - / Hypothetical protein / -
RHL3.76 / 81287 / 80961 / - / 109 / - / Hypothetical protein / -
RHL3.77 / 81648 / 81307 / - / 114 / 46 / Conserved hypothetical protein / M. leprae
RHL3.78 / 83166 / 81883 / - / 428 / - / Hypothetical protein / -
RHL3.79 / 85358 / 83622 / - / 579 / 27 / Putative histone protein H1 / Ralstonia solanacearum (P. solanacearum)
RHL3.80 / 85783 / 85532 / - / 84 / - / Hypothetical protein / -
RHL3.81 / 86844 / 88175 / + / 444 / 25 / Hypothetical protein / P. aeruginosa
RHL3.82 / 89400 / 89233 / - / 56 / - / Hypothetical protein / -
RHL3.83 / 89672 / 89836 / + / 55 / - / Hypothetical protein / -
RHL3.84 / 89896 / 91221 / + / 442 / - / Hypothetical protein / -
RHL3.85 / 91424 / 92161 / + / 246 / - / Putative transposase / -
RHL3.86 / 93526 / 92405 / - / 374 / 45 / Probable regulatory protein EmbR / M. tuberculosis and M. bovis
RHL3.87 / 93759 / 94457 / + / 233 / 35 / Conserved hypothetical protein / M. tuberculosis and M. bovis
RHL3.88 / 95128 / 97482 / + / 785 / 44 / Conserved putative ABC transporter ATP-binding protein / S. avermitilis
RHL3.89 / 99669 / 97756 / - / 638 / 27 / Conserved probable serine / threonine-protein kinase PknH / M. tuberculosis
RHL3.90 / 100003 / 100488 / + / 162 / 23 / Putative transcriptional regulator / MarR family / S. peucetius
RHL3.91 / 102553 / 100637 / - / 639 / 25 / Probable serine / threonine-protein kinase / M. tuberculosis and M. bovis
RHL3.92 / 103527 / 103042 / - / 162 / 27 / Hypothetical protein / M. tuberculosis and M. bovis
RHL3.93 / 104875 / 104696 / - / 60 / - / Hypothetical protein / -
RHL3.94 / 105133 / 105288 / + / 52 / - / Putative transposase / -
RHL3.95 / 105398 / 105826 / + / 143 / - / Putative transposase / -
RHL3.96 / 106159 / 107289 / + / 377 / 47 / Conserved hypothetical protein / M. tuberculosis and M. bovis
RHL3.97 / 107775 / 107332 / - / 148 / - / Hypothetical putative kinase / -
RHL3.98 / 108482 / 107838 / - / 215 / 24 / Hypothetical protein / Rhizobium etli
RHL3.99 / 108896 / 108489 / - / 136 / 23 / Hypothetical protein / putative excisonase protein / Ralstonia solanacearum (P. solanacearum)
RHL3.100 / 110579 / 112279 / + / 567 / - / Hypothetical protein / -
RHL3.101 / 112301 / 112390 / + / 30 / - / Hypothetical protein / -
RHL3.102 / 113412 / 112600 / - / 271 / 62 / Conserved Rv2813-like protein / M. celatum
RHL3.103 / 114893 / 113412 / - / 494 / 63 / Conserved transposase / M. tuberculosis
RHL3.104 / 115589 / 114936 / - / 218 / 27 / Conserved hypothetical protein / M. tuberculosis
RHL3.105 / 116298 / 116104 / - / 65 / - / Hypothetical protein / -
RHL3.106 / 116441 / 117388 / + / 316 / 49 / Conserved hypothetical /putative transposase / Bradyrhizobium japonicum
RHL3.107 / 117693 / 117391 / - / 101 / - / Hypothetical protein / -
RHL3.108 / 118073 / 117693 / - / 127 / - / Hypothetical protein / -
RHL3.109 / 118318 / 118464 / + / 49 / - / Hypothetical protein / -
RHL3.110 / 118431 / 119264 / + / 278 / 28 / Conserved DNA ligase / S. coelicolor
RHL3.111 / 119658 / 119545 / - / 38 / - / Hypothetical protein / -
RHL3.112 / 119957 / 121129 / + / 391 / 53 / Conserved transposase / S. coelicolor
RHL3.113 / 121236 / 121976 / + / 247 / - / Hypothetical protein / -
RHL3.114 / 122252 / 122449 / + / 66 / - / Hypothetical protein / -
RHL3.115 / 122997 / 122599 / - / 133 / - / Hypothetical protein / -
RHL3.116 / 123147 / 123347 / + / 67 / - / Hypothetical protein / putative acyl transferase / -
RHL3.117 / 123688 / 123380 / - / 103 / - / Hypothetical Protein / some identity to chromosome partitioning protein / -
RHL3.118 / 124145 / 123780 / - / 122 / - / Hypothetical protein / -
RHL3.119 / 124760 / 126529 / + / 590 / - / Hypothetical protein / putative microfilarial sheath protein / -
RHL3.120 / 127576 / 127241 / - / 112 / - / Hypothetical protein / -
RHL3.121 / 128088 / 127579 / - / 170 / - / Hypothetical protein / -
RHL3.122 / 128681 / 130618 / + / 646 / - / Hypothetical protein / -
RHL3.123 / 131733 / 131206 / - / 176 / - / Hypothetical protein / -
RHL3.124 / 132473 / 131940 / - / 178 / - / Hypothetical protein / -
RHL3.125 / 133288 / 132464 / - / 275 / - / Hypothetical protein / -
RHL3.126 / 133336 / 134364 / + / 343 / - / Hypothetical protein / -
RHL3.127 / 134438 / 135031 / + / 198 / - / Hypothetical protein / -
RHL3.128 / 135703 / 135185 / - / 173 / 26 / Putative transposase / Arthrobacter nicotinovorans
RHL3.129 / 137620 / 135710 / - / 637 / 28 / Putative transposase / S. avermitilis
RHL3.130 / 139434 / 138211 / - / 408 / 29 / Putative transposase / M. gordonae
RHL3.131 / 139920 / 139456 / - / 155 / 25 / Hypothetical protein / M. tuberculosis
RHL3.132 / 140657 / 140797 / + / 47 / - / Hypothetical protein / -
RHL3.133 / 140921 / 141814 / + / 298 / 30 / Putative DNA ligase ATP-dependent / S. coelicolor
RHL3.134 / 143027 / 141957 / - / 357 / - / Hypothetical protein / -
RHL3.135 / 144075 / 143851 / - / 75 / - / Hypothetical protein / -
RHL3.136 / 144427 / 146160 / + / 578 / 52 / Putative methylase / Caulobacter crescentus
RHL3.137 / 146217 / 147332 / + / 372 / 25 / Putative type I restriction modification system enzyme / Methanosarcina acetivorans
RHL3.138 / 147322 / 150444 / + / 1041 / 41 / Putative DNA helicase / C. efficiens
RHL3.139 / 150662 / 152125 / + / 488 / 42 / Putative ABC transporter ATP binding protein / Synechococcus sp (strain PCC 7942) (Anacystis nidulans R2)
RHL3.140 / 152455 / 152736 / + / 94 / 62 / Putative transposase subunit / Micrococcus sp 28
RHL3.141a / 152739 / 153395 / + / 219 / 26 / Putative transposase / possible pseudogene / M. abscessus
RHL3.141b / 153148 / 153597 / + / 150 / 30 / Putative transposase / possible pseudogene / M. abscessus
RHL3.142 / 154183 / 153887 / - / 99 / 31 / Putative WhiB-related protein / Transcription factor (cell division) / M. tuberculosis
RHL3.143 / 155795 / 154242 / - / 518 / 47 / Putative AMP-binding protein AMP-dependent synthase and ligase / P. putida (strain KT2440)
RHL3.144 / 156128 / 155826 / - / 101 / 20 / YCII-containing hypothetical protein / S. coelicolor
RHL3.145 / 157024 / 156128 / - / 299 / - / Putative hydrolase / -
RHL3.146 / 158167 / 157265 / - / 301 / 32 / Putative dehydrogenase / P. aeruginosa
RHL3.147 / 158367 / 159224 / + / 286 / - / Hypothetical protein / -
RHL3.148 / 159267 / 160154 / + / 296 / 31 / Hypothetical protein / M. tuberculosis
RHL3.149 / 160283 / 161413 / + / 377 / 29 / Putative hydrolase / M. tuberculosis
RHL3.150 / 161508 / 162518 / + / 337 / 84 / Conserved F420-dependent glucose-6-phosphate dehydrogenase / M. phlei
RHL3.151 / 162550 / 164199 / + / 550 / 69 / Conserved glucose-6-phosphate isomerase / M. tuberculosis and M. bovis
RHL3.152 / 166291 / 164693 / - / 533 / 46 / Putative AMP-dependent synthase and ligase / Rhizobium meliloti (Sinorhizobium meliloti)
RHL3.153 / 167376 / 166561 / - / 272 / 41 / Cholesterol oxidase dehydrogenase / Nocardioides simplex (Arthrobacter simplex)
RHL3.154 / 168608 / 167502 / - / 369 / 41 / Putative Nicotinoprotein alcohol dehydrogenase / R. ruber
RHL3.155 / 170357 / 168723 / - / 545 / 40 / Conserved putative polyketide hydroxylase / Nocardia aerocolonigenes
RHL3.156 / 172382 / 171159 / - / 408 / 31 / Putative permease transporter / S. coelicolor
RHL3.157 / 174191 / 173097 / - / 365 / 21 / Putative transporter bacterial inner membrane translocator RbsC / Pasteurella multocida
RHL3.158 / 175723 / 174203 / - / 507 / 38 / Putative ABC transporter ATP binding protein / S. coelicolor
RHL3.159 / 176971 / 175808 / - / 388 / - / Putative ABC-type sugar transport system periplasmic component / -
RHL3.160 / 178987 / 177539 / - / 483 / 34 / Putative aldehyde dehydrogenase / M. tuberculosis
RHL3.161 / 180258 / 179617 / - / 214 / 23 / Putative transcriptional regulator / TetR family / P. syringae (pv tomato)
RHL3.162 / 182121 / 180334 / - / 596 / 31 / Putative succinyl-CoA:3-ketoacid-coenzyme A transferase subunit / Leptospira interrogans
RHL3.163 / 182888 / 182142 / - / 249 / 37 / Putative dehydrogenase reductase / Thauera aromatica
RHL3.164 / 183722 / 182940 / - / 261 / 48 / Putative 2-ketocyclohexanecarboxyl-CoA hydrolase / RhodoP. palustris
RHL3.165 / 184591 / 183764 / - / 276 / 31 / Hydratase isomerase / Archaeoglobus fulgidus
RHL3.166 / 185751 / 184591 / - / 387 / 44 / Putative acyl-CoA dehydrogenase / S. avermitilis
RHL3.167 / 186154 / 185741 / - / 138 / 30 / Putative nucleic-acid-binding protein containing a Zn-ribbon / Methanopyrus kandleri
RHL3.168 / 187302 / 186154 / - / 383 / 37 / Putative acetyl transferase thiolase / S. avermitilis
RHL3.169 / 188103 / 187414 / - / 230 / 27 / Putative transcriptional regulator / GntR family / P. putida (strain KT2440)
RHL3.170 / 189312 / 188170 / - / 381 / 34 / Hypothetical protein carnitine dehydratase acyl coA transferase / P. aeruginosa
RHL3.171 / 190945 / 189308 / - / 546 / 34 / Putative ligase synthase / Shigella flexneri
RHL3.172 / 191260 / 191766 / + / 169 / 25 / Hypothetical function protein / Anabaena sp (strain PCC 7120)
RHL3.173 / 192434 / 194359 / + / 642 / 66 / Putative AMP-dependent Acyl CoA synthetase and ligase / M. tuberculosis
RHL3.174 / 196932 / 195931 / - / 334 / 44 / Putative integrase recombinase / Arthrobacter nicotinovorans
RHL3.175 / 197664 / 197266 / - / 133 / - / Hypothetical protein / -
RHL3.176 / 198382 / 197780 / - / 201 / - / Putative ATP-dependent proteinase / -
RHL3.177 / 199059 / 198484 / - / 192 / 20 / Putative transcriptional regulator / TetR family / S. coelicolor
RHL3.178 / 199188 / 199844 / + / 219 / 36 / Putative methylase methyltransferase / Methanosarcina mazei (Methanosarcina frisia)
RHL3.179 / 199841 / 200215 / + / 125 / 33 / Hypothetical protein / Caulobacter crescentus
RHL3.180 / 200215 / 200469 / + / 85 / - / Hypothetical protein / -
RHL3.181 / 202235 / 200661 / - / 525 / 61 / Hypothetical 53.8 kDa protein (Copper-binding protein putative) / M. tuberculosis
RHL3.182 / 202609 / 202340 / - / 90 / 31 / Hypothetical protein / Thermotoga maritima
RHL3.183 / 202742 / 203497 / + / 252 / 53 / Putative sensory transduction protein /two-component regulatory system / C. efficiens
RHL3.184 / 203497 / 204651 / + / 385 / 36 / Putative two-component system / sensory transduction histidine kinase / C. glutamicum (Brevibacterium flavum)
RHL3.185 / 205278 / 204994 / - / 95 / 39 / Putative metal associated protein / S. coelicolor
RHL3.186 / 206015 / 205278 / - / 246 / 34 / Hypothetical protein / C. glutamicum (Brevibacterium flavum)
RHL3.187 / 206611 / 206306 / - / 102 / 64 / Hypothetical protein Rv0190 / M. tuberculosis
RHL3.188 / 206931 / 206803 / - / 43 / 59 / Hypothetical protein / M. tuberculosis
RHL3.189 / 209412 / 206977 / - / 812 / 37 / Putative Heavy-metal transporting P-type ATPase / Clostridium acetobutylicum
RHL3.190 / 209779 / 209531 / - / 83 / - / Putative Tll1231 protein / -
RHL3.191 / 210228 / 209779 / - / 150 / - / Hypothetical protein / -
RHL3.192 / 210293 / 210574 / + / 94 / 52 / Hypothetical protein Cgl3081 heavy metal transport / C. glutamicum (Brevibacterium flavum)
RHL3.193 / 210763 / 213021 / + / 753 / 60 / Putative metal transporter ATPase / S. coelicolor
RHL3.194 / 214623 / 213082 / - / 514 / - / Putative integral membrane protein / -
RHL3.195 / 215288 / 214623 / - / 222 / 48 / Putative ABC transport system ATP-binding protein / S. coelicolor
RHL3.196 / 216017 / 215547 / - / 157 / - / Hypothetical protein / -
RHL3.197 / 217466 / 216171 / - / 432 / 35 / Putative substrate transport possibly sugar / Halobacterium sp (strain NRC-1 / ATCC 700922 / JCM 11081)
RHL3.198 / 218845 / 217484 / - / 454 / 36 / Conserved hypothetical protein / S. coelicolor
RHL3.199 / 218936 / 219595 / + / 220 / 57 / Putative regulatory protein / ArsR family / S. peucetius
RHL3.200 / 219905 / 219636 / - / 90 / - / Hypothetical protein / -
RHL3.201 / 220389 / 220751 / + / 121 / 33 / Putative signal transduction protein GarA / M. smegmatis
RHL3.202 / 222171 / 221005 / - / 389 / 44 / Putative ATP-binding protein / S. coelicolor
RHL3.203 / 225035 / 222171 / - / 955 / 22 / Hypothetical protein molybdopterin oxidoreductase / Salmonella typhi
RHL3.204 / 226593 / 225067 / - / 509 / 35 / Hypothetical protein ferredoxin iron-sulfur binding / Vibrio parahaemolyticus
RHL3.205 / 226823 / 226593 / - / 77 / 31 / Hypothetical conserved protein. SirA protein homolog / OceanoB. iheyensis
RHL3.206 / 227358 / 226852 / - / 169 / 36 / Putative NADH dehydrogenase / B. cereus (strain ATCC 14579 / DSM 31)
RHL3.207 / 227533 / 228675 / + / 381 / 32 / Hypothetical protein / OceanoB. iheyensis
RHL3.208 / 228642 / 229061 / + / 140 / 34 / Hypothetical protein / Salmonella typhimurium
RHL3.209 / 229074 / 229430 / + / 119 / - / Hypothetical protein / -
RHL3.210 / 229493 / 229825 / + / 111 / 37 / Putative transcriptional regulator / ArsR family / Vibrio vulnificus
RHL3.211 / 230313 / 231689 / + / 459 / 37 / Putative hydrolase Zn-dependent hydrolases including glyoxylases / Deinococcus radiodurans
RHL3.212 / 231731 / 232105 / + / 125 / 58 / Putative thioredoxin / M. tuberculosis
RHL3.213 / 232580 / 232954 / + / 125 / 53 / Hypothetical protein / possible carboxymuconolactone decarboxylase / M. tuberculosis
RHL3.214 / 234223 / 234615 / + / 131 / 38 / Putative thiosulfate sulfurtransferase / C. glutamicum (Brevibacterium flavum)
RHL3.215 / 234615 / 236780 / + / 722 / - / Putative membrane transport protein / -
RHL3.216 / 236882 / 237148 / + / 89 / 67 / Hypothetical proteins / M. tuberculosis
RHL3.217 / 237198 / 237443 / + / 82 / 36 / Hypothetical protein / Shewanella oneidensis
RHL3.218 / 237503 / 237913 / + / 137 / 45 / Hypothetical protein / S. coelicolor
RHL3.219 / 237961 / 238731 / + / 257 / 24 / Putative permease / C. efficiens
RHL3.220 / 238822 / 240171 / + / 450 / 50 / Conserved hypothetical protein / S. coelicolor
RHL3.221 / 240839 / 240618 / - / 74 / - / Putative integral membrane transporter / -
RHL3.222 / 242398 / 241310 / - / 363 / 39 / Zinc-containing alcohol dehydrogenase / Rhizobium meliloti (Sinorhizobium meliloti)
RHL3.223 / 243416 / 243228 / - / 63 / - / Hypothetical protein / -
RHL3.224 / 243503 / 243793 / + / 97 / - / Hypothetical protein / -
RHL3.225 / 244665 / 245906 / + / 414 / 20 / Hypothetical protein / Anabaena sp (strain PCC 7120)
RHL3.226 / 247281 / 246544 / - / 246 / - / Hypothetical protein / -
RHL3.227 / 248371 / 247577 / - / 265 / - / Conserved hypothetical / putative transposase / -
RHL3.228 / 250290 / 248374 / - / 639 / 34 / Conserved hypothetical protein / M. celatum
RHL3.229 / 250727 / 250290 / - / 146 / - / Hypothetical protein / -
RHL3.230 / 251136 / 250867 / - / 90 / - / Hypothetical protein / -
RHL3.231 / 251402 / 251178 / - / 75 / - / Hypothetical protein / -
RHL3.232 / 251746 / 252687 / + / 314 / - / Hypothetical protein / -
RHL3.233 / 255387 / 254044 / - / 448 / - / Putative phage excisionase / -
RHL3.234 / 255916 / 255548 / - / 123 / - / Hypothetical protein / -
RHL3.235 / 256695 / 255916 / - / 260 / 34 / Putative plasmid partitioning protein (ParA) / R. erythropolis
RHL3.236 / 259241 / 258009 / - / 411 / - / Hypothetical protein / -
RHL3.237 / 261733 / 260402 / - / 444 / 25 / Rep-like protein / M. celatum
RHL3.238 / 262713 / 262339 / - / 125 / - / Putative alcohol dehydrogenase / -
RHL3.239 / 263071 / 262769 / - / 101 / - / Hypothetical protein / -
RHL3.240 / 263592 / 263071 / - / 174 / - / Hypothetical protein / -
RHL3.241 / 264008 / 263592 / - / 139 / - / Hypothetical protein / putative oxidase / -
RHL3.242 / 265297 / 264056 / - / 414 / 90 / Conserved transposase / R. rhodochrous
RHL3.243 / 266019 / 266462 / + / 148 / 34 / Putative repressor protein (TrbA) / C. equii (R. equi)
RHL3.244 / 267291 / 266761 / - / 177 / 29 / Putative intracellular septation protein / Ralstonia solanacearum (P. solanacearum)
RHL3.245 / 268435 / 267353 / - / 361 / - / Hypothetical protein / -
RHL3.246 / 269639 / 268476 / - / 388 / 31 / Putative cytochrome P450 / S. avermitilis
RHL3.247 / 269731 / 270783 / + / 351 / 26 / Hypothetical protein / M. tuberculosis
RHL3.248 / 271494 / 270910 / - / 195 / - / Hypothetical protein / -
RHL3.249 / 272093 / 271509 / - / 195 / - / Hypothetical protein / -
RHL3.250 / 275354 / 272385 / - / 990 / - / Hypothetical protein / possible transcription factor / -
RHL3.251 / 276412 / 275354 / - / 353 / 24 / Putative ATP/GTP-binding protein / S. coelicolor
RHL3.252 / 278412 / 276412 / - / 667 / 26 / Putative transposase / S. coelicolor
RHL3.253 / 279344 / 278454 / - / 297 / 24 / Hypothetical protein / S. coelicolor
RHL3.254 / 280967 / 279381 / - / 529 / 21 / Putative peptidase / C. equii (R. equi)
RHL3.255 / 281833 / 281000 / - / 278 / - / Hypothetical protein / -
RHL3.256 / 284091 / 281836 / - / 752 / - / Hypothetical protein / -
RHL3.257 / 287033 / 284091 / - / 981 / - / Putative ATPase / -
RHL3.258 / 287539 / 287144 / - / 132 / - / Hypothetical protein / -
RHL3.259 / 287895 / 287587 / - / 103 / - / Hypothetical protein / -
RHL3.260 / 288864 / 291065 / + / 734 / - / Putative cell division protein / -
RHL3.261 / 291157 / 291501 / + / 115 / - / Hypothetical protein / -
RHL3.262 / 291507 / 292997 / + / 497 / 25 / Conserved hypothetical protein / Arthrobacter nicotinovorans
RHL3.263 / 293050 / 294261 / + / 404 / 30 / Conserved hypothetical protein / C. equii (R. equi)
RHL3.264 / 294390 / 294998 / + / 203 / - / Conserved hypothetical protein / -
RHL3.265 / 295182 / 297164 / + / 661 / 21 / Hypothetical protein / M. tuberculosis
RHL3.266 / 297646 / 298401 / + / 252 / 42 / Conserved hypothetical protein / putative aminohydrolase / S. coelicolor
RHL3.267 / 298313 / 299533 / + / 407 / - / Hypothetical protein / -
RHL3.268 / 300440 / 299856 / - / 195 / - / Hypothetical protein / -
RHL3.269 / 301131 / 300766 / - / 122 / - / Hypothetical protein / Putative ATP-dependent helicase / -
RHL3.270 / 302068 / 301172 / - / 299 / - / Putative ATP-dependent helicase / -
RHL3.271 / 302731 / 302961 / + / 77 / - / Hypothetical protein / -
RHL3.272 / 303265 / 303495 / + / 77 / 31 / Conserved hypothetical protein / M. tuberculosis
RHL3.273 / 304908 / 303940 / - / 323 / - / Putative serine / threonine-protein kinase pknK / -
RHL3.274 / 305619 / 304981 / - / 213 / - / Putative 34-dihydroxy-2-butanone-4-phosphate synthase / -
RHL3.275 / 306003 / 305635 / - / 123 / - / Hypothetical protein / -
RHL3.276 / 307112 / 306021 / - / 364 / 46 / Conserved Alcohol dehydrogenase class IV / Comamonas acidovorans (P. acidovorans)
RHL3.277 / 308001 / 307105 / - / 299 / 43 / Conserved dioxygenase / Agrobacterium tumefaciens (strain C58 / ATCC 33970)
RHL3.278 / 308291 / 308001 / - / 97 / 29 / Hypothetical protein / Bradyrhizobium japonicum
RHL3.279 / 308851 / 308336 / - / 172 / 36 / Putative oxidoreductase / S. coelicolor
RHL3.280 / 310077 / 308857 / - / 407 / 30 / Putative indole dioxygenase / S. avermitilis
RHL3.281 / 310249 / 311304 / + / 352 / 30 / Probable thc operon regulatory protein / AraC family / R. erythropolis
RHL3.282 / 311615 / 311914 / + / 100 / 38 / Putative WhiB-related protein / transcription factor (cell division) / M. tuberculosis
RHL3.283 / 312026 / 313237 / + / 404 / 53 / Conserved malic enzyme / S. coelicolor
RHL3.284 / 313807 / 314808 / + / 334 / 33 / Probable thc operon regulatory protein / AraC family / R. erythropolis
RHL3.285 / 315516 / 315055 / - / 154 / - / Hypothetical protein / -
RHL3.286 / 315759 / 316727 / + / 323 / 20 / Putative ferredoxin/reductase / R. sp NCIMB 9784
RHL3.287 / 316809 / 318125 / + / 439 / 26 / Conserved cytochrome P450 / R. sp NCIMB 9784
RHL3.288 / 318647 / 319030 / + / 128 / 35 / Putative ethD (ethidium homeodimer) / R. ruber
RHL3.289 / 319352 / 320398 / + / 349 / - / Hypothetical protein / -
RHL3.290 / 320628 / 321038 / + / 137 / 28 / Hypothetical protein / Aquifex aeolicus
RHL3.291 / 321125 / 321571 / + / 149 / 38 / Conserved hypothetical protein / R. sp CIR2
RHL3.292 / 321813 / 322082 / + / 90 / - / Hypothetical protein / -
RHL3.293 / 322219 / 322911 / + / 231 / 79 / Conserved hypothetical protein / M. tuberculosis
RHL3.294 / 324660 / 322984 / - / 559 / 70 / Conserved glucose-6-phosphate isomerase / M. tuberculosis and M. bovis
RHL3.295 / 325563 / 324667 / - / 299 / 63 / Conserved GND protein / 6-phosphogluconate dehydrogenase / M. smegmatis
RHL3.296 / 326379 / 325753 / - / 209 / 56 / Conserved 3-hexulose-6-phosphate synthase / M. gastri
RHL3.297 / 327010 / 326432 / - / 193 / 90 / Conserved 6-phospho-3-hexuloisomerase / R. opacus
RHL3.298 / 327200 / 328438 / + / 413 / 72 / Conserved LuxR-like transcriptional regulator / R. opacus
RHL3.299 / 329871 / 328591 / - / 427 / 90 / Putative glucose-6-phosphate dehydrogenase / R. opacus
RHL3.300 / 331655 / 331044 / - / 204 / - / Putative ATPase with chaperone activity ATP-binding subunit / -
aBased on blastp alignment with members of the non-redundant SPtrEMBL protein database only.
bGene product description was inferred by blast sequence similarity of predicted genes with annotated proteins of the nr-SPtrEMBL, NCBI-nr and Rhodococcus sp. I24 ( protein databases and identification of protein motifs from a collection of protein domains database as described in Material and Methods.