ESM Table 1 Selected Key Data on the SSR Markers Developed

ESM Table 1 Selected key data on the SSR markers developed

Marker ID / String /

SSR motif

/ PIC value /

Chromosome

/ BAC addressesa / Putative function (BLAST X results)
GBM1001 / 5' / (ATG)7 / 0.28 / 5H / none identified / photosystem II protein W-like protein - rice
GBM1002 / 5' / (CCT)7 / 0.50 / 1H / 558G05, 722I20, 739N10 / phosphoethanolamine methyltransferase -wheat
GBM1003 / 5' / (CTT)8 / 0.67 / 4H / 475H23, 545M02, 567H13 / hypothetical protein - rice
GBM1004 / 5' / (TAC)5 / 0.61 / 1H / 35K02, 158P01, 197A23 / unknown protein - rice
GBM1005 / 3' / (ATC)7 / 0.28 / 6H / 268E23, 307D23, 337J18, 804E12, 804F12 / xyloglucan endotransglycosylase (EC 2.4.1.-) - barley
GBM1006 / 3' / (AGC)9 / 0.50 / 7H / 261L21, 283M18, 361E15 / -
GBM1007 / 3' / (AC)11 / 0.61 / 1H / none identified / -
GBM1008 / 3' / (AAC)10 / 0.64 / 6H / 793I12, 810K09 / -
GBM1009 / 5' / (AGG)7 / 0.28 / 4H / 154O14, 484N10, 604L12 / -
GBM1010 / 5' / (CCT)6 / 0.28 / 3H / 328A17, 357L13 / OSJNBa0083M16.12 - rice
GBM1011 / 5' / (CTT)7 / 0.44 / 2H / 30P07, 437F23, 619C04 / GRAB2 protein -wheat
GBM1012 / 5' / (CTG)7 / 0.67 / 2H / 110A24, 294L17 / harpin-induced protein 1 family (HIN1) - Arabidopsis
GBM1013 / 5' / (CTG)9 / 0.50 / 1H / 40J20, 271G13, 667A05 / -
GBM1014 / 3' / (CTG)6 / 0.44 / 3H / 292L14, 382N24 / -
GBM1015 / 3' / (ACAT)13 / 0.78 / 4H / 117O23, 630E06 / O-methyltransferase - rye
GBM1016 / 3' / (ATCC)6 / 0.50 / 2H / 1A06, 151D01, 183N14 / extracellular invertase; beta-fructofuranosidase -wheat
GBM1017 / 5' / (ATGT)6 / 0.28 / 7H / 514C19, 721A22 / -
GBM1018 / 5' / (CCG)6 / 0.44 / 4H / 494O17, 569D20 / arginine/serine-rich splicing factor (RSp31) - Arabidopsis
GBM1019 / 3' / (AC)7 / 0.67 / 2H / 176F10, 176F11, 176G10, 176G14 / unknown protein (AAG00940.1) - soybean
GBM1020 / 3' / (AC)7 / 0.44 / 4H / 258C12, 679F08 / -
GBM1021 / 3' / (AC)8 / 0.72 / 6H / 301H19, (516M05), 676O18 / -
GBM1022 / 3' / (AC)10 / 0.50 / 6H / 200D02, 252N23 / -
GBM1023 / 3' / (AC)8 / 0.28 / 2H / 12L17, 334I01, 456O11 / -
GBM1024 / 5' / (AC)11 / 0.50 / 2H / 232M12 / harpin-induced protein 1 family (HIN1) - Arabidopsis
GBM1025 / 3' / (AC)10 / 0.44 / 1H / 466N19, 492J24 / -
GBM1026 / 3' / (AC)9 / 0.50 / 5H / 564G07, 568G11, 707J23 / cinnamoyl-CoA reductase- maize
GBM1027 / 5' / (AC)9 / 0.50 / 6H / 124F04, 156E20, 324B17 / glutathione S-transferase- wheat
GBM1028 / 3' / (AC)7 / 0.28 / 4H / 236I12, 236I13, 325D16 / -
GBM1029 / 5' / (AG)10 / 0.50 / 1H / 79C19, 489F22 / unknown protein (AC037425_6) - rice
GBM1030 / 5' / (AG)17 / 0.44 / 7H / 73E06, 142G04, 719H15 / expressed protein - Arabidopsis
GBM1031 / 5' / (AG)15 / 0.67 / 3H / 270B19, 311F16, 502N03 / putative zinc finger protein - rice
GBM1032 / 3' / (AG)9 / 0.72 / 1H / 45D06, 328N03, 518B02, 553P16 / alanine aminotransferase 2 (GPT) (glutamic-pyruvic transaminase 2) (glutamic-alanine transaminase 2) (ALAAT-2) - barley
GBM1033 / 3' / (AT)9 / 0.50 / 7H / n.d. / alpha-amylase/ trypsin inhibitor CMA precursor - barley
GBM1034 / 3' / (AT)7 / 0.61 / 3H / 398F11, 557G15 / -
GBM1035 / 3' / (CT)8 / 0.61 / 2H / 105I11, 105M06, 105M14, 374M01, 804E13, 804F13 / plasma membrane major intrinsic protein 2 - sugar beet
GBM1036 / 3' / (CT)8 / 0.61 / 2H / 113O23, 113P23, 347G17 / -
GBM1037 / 3' / (CT)8 / 0.50 / 3H / 315N21, 536F10 / -
GBM1038 / 3' / (CT)8 / 0.28 / 5H / 416L19, 448M06 / -
GBM1039 / 5' / (CT)10 / 0.28 / 5H / 120J22, 380P17, 591A13 / -
GBM1040 / 3' / (GT)10 / 0.28 / 3H / (064A24), 169D02, (312D09), (526J23), (579B12) / probable phospholipid transfer protein precursor - barley
GBM1041 / 5' / (GT)7 / 0.28 / 5H / 80M15, 80I13, 296D21, 401C09 / -
GBM1042 / 5' / (AAC)5 / 0.50 / 1H / 64H10, 128M18, 425D19 / -
GBM1043 / 5' / (AAC)5 / 0.61 / 3H / (41C24), 274P02, 559M03 / sedoheptulose-1,7-bisphosphatase (SBPASE) precursor (SED(1,7)P2ASE) -wheat
GBM1044 / 3' / (AAG)6 / 0.72 / 4H / 298A06, 567K06, 597C09 / -
GBM1045 / 3' / (ACC)6 / 0.28 / 5H / n.d. / -
GBM1046 / 5' / (AGC)6 / 0.28 / 3H / 67L19, 195L18, 606I19 / putative inorganic polyphosphate/ATP-NAD kinase - rice
GBM1047 / 3' / (AGC)5 / 0.61 / 2H / 139A19, 150G19, 346E20 / -
GBM1048 / 3' / (AGC)5 / 0.28 / 4H / 212L09 / -
GBM1049 / 5' / (AGC)5 / 0.28 / 6H / 334A06, 499N10, 516M05, (676O18) / protein kinase family - Arabidopsis
GBM1050 / 5' / (AGG)5 / 0.44 / 3H / 537M01, 486M04, 679O07 / -
GBM1051 / 5' / (AGG)5 / 0.50 / 1H / 452H02 / DNA- directed RNA polymerase II (subunit 5)- soybean
GBM1052 / 3' / (ATC)5 / 0.50 / 2H / 535P07, 731I05, 588J02 / -
GBM1053 / 5' / (CCG)7 / 0.32 / 6H / n.d. / hypotehtical protein (OJ1014_G12.29) - rice
GBM1054 / 3' / (CCG)5 / 0.61 / 5H / n.d. / putative ribosomal protein S18 -wheat
GBM1055 / 3' / (CCT)6 / 0.28 / 4H / n.d. / -
GBM1056 / 5' / (CGG)6 / 0.50 / 3H / 194B18, 486M04, (509D32), (537M01), 582L01, (679O07) / E86466 protein F23M19.10 [imported] - Arabidopsis
GBM1057 / 5' / (CGG)5 / 0.28 / 6H / (334A06), 499N10, 516M05, (676O18) / -
GBM1058 / 5' / (CTG)6 / 0.28 / 7H / (290K01), (310J18), 474G04, 804L09 / -
GBM1059 / 3' / (GGT)5 / 0.61 / 3H / 194B18, (486M04), 509D02, (537M01), 582L01, (679O07) / -
GBM1060 / 3' / (GGT)6 / 0.50 / 7H / 359J23 / GAMYB-binding protein - barley
GBM1061 / 5' / (GGT)6 / 0.28 / 1H / n.d. / flavin-containing monooxygenase (FMO) family - Arabidopsis
GBM1062 / 3' / (AAAC)5 / 0.44 / 2H / 382J15, 402G24, 494K10 / root-specific protein RCc3 - rice
GBM1063 / 3' / (ACAT)7 / 0.61 / 6H / 27H10, 551H05, 744L05 / plasma membrane intrinsic protein BPW1 - barley
GBM1064 / 3' / (AGGG)5 / 0.44 / 5H / -
GBM1065 / 3' / (ATGC)5 / 0.28 / 7H / 111C05, 274E14, 536G12 / -
GBM1066 / 3' / (ATGG)5 / 0.32 / 2H / n.d. / -
GBM1067 / 3' / (TGC)5 / 0.28 / 4H / n.d. / ethylene-insensitive-3-like protein - rice
GBM1068 / 3' / (AC)6 / 0.28 / 6H / 224B11, 570O12 / -
GBM1069 / 3' / (AC)6 / 0.28 / 3H / 417J05, 702E23, 724N11 / -
GBM1070 / 3' / (AG)6 / 0.50 / 1H / 93H08, 346M18, 730E17 / homeobox leucine-zipper protein - Zinnia elegans
GBM1071 / 5' / (AG)6 / 0.44 / 4H / n.d. / expressed protein - Arabidopsis
GBM1072 / 3' / (AT)6 / 0.28 / 1H / n.d. / -
GBM1073 / 3' / (CT)6 / 0.28 / 3H / 64A24, 312D09, 526J23, (579B12) / nonspecific lipid -transfer protein 4.3 precursor (LTP 4.3) - barley
GBM1074 / 3' / (CT)6 / 0.28 / 3H / (169D02) / -
GBM1075 / 5' / (GT)6 / 0.72 / 6H / 548F15, 647F22 / histone H2B-1 - Lolium perenne
GBM1076 / 3' / (GT)6 / 0.28 / 6H / 284K19, 445D13, 617P09 / putative protein (CAC39065) - rice
GBM1078 / 3' / (CT)6 / 0.61 / 3H / 16L10, 265N21 / -
GBM1087 / 3' / (AGG)5 / 0.57 / 6H / 175O15, 459F22, 572O14 / -
GBM1092 / 5' / (CT)7 / 0.24 / 1H / 195B12, 504M13, 567G16 / -
GBM1094 / 3' / (CT)7 / 0.45 / 3H / 536H06, 654H14 / protease-like protein precursor- wheat
GBM1102 / 3' / (CT)10 / 0.24 / 7H / 533J22, 699M15 / -
GBM1110 / 3' / (AAG)6 / 0.61 / 3H / 484C17, 500J15 / putative brassinosteroid-insensitive protein BRI1 - rice
GBM1115 / 5' / (CGG)5 / 0.57 / 7H / n.d. / expressed protein - Arabidopsis
GBM1116 / 5' / (CCG)5 / 0.61 / 7H / n.d. / 40S subunit ribosomal protein - rice
GBM1119 / 5' / (CCG)8 / 0.45 / 2H / 275M10, 447O24, 685O17 / putative 40S ribosomal protein -rice
GBM1121 / 5' / (AG)7 / 0.69 / 2H / 314G08, 314G13, 804E14, 804F14 / putative aquaporin PIP2-2 [Vitis berlandieri x Vitis rupestris]
GBM1123 / 5' / (AC)8 / 0.41 / 3H / 489F09 / heavy-metal-associated domain-containing protein- Arabidopsis
GBM1126 / 3' / (AT)6 / 0.57 / 7H / 246J13, 252H16, 552H13, 702E18 / OSEYA1 - rice
GBM1139 / 3' / (ATG)6 / 0.49 / 3H / 236B11, 539P21, 79O10 / hypothetical protein 2 (clone ES1A- GA3 regulated cDNA)- barley
GBM1140 / 3' / (ATC)5 / 0.24 / 6H / 113D01, 113F01, 306D14, 351F23, (810K09) / trehalose-6-phosphate synthase homolog - Arabidopsis
GBM1143 / 3' / (AG)7 / 0.49 / 1H / 358A01, 554N06, 608M06 / -
GBM1149 / 5' / (CT)7 / 0.50 / 2H / 446I09 / unknown protein - Arabidopsis
GBM1159 / 5' / (AC)6 / 0.24 / 3H / (64A24), 312D09, 526J23, 579B12 / non-specific lipid transfer protein (LTP 4.3) - barley
GBM1162 / 3' / (CCT)6 / 0.24 / 3H / 165E24, 640I20 / putative peptide transporter - rice
GBM1164 / 5' / (ATC)5 / 0.57 / 5H / 366A19, 481L13 / putative hydrolase - rice
GBM1174 / 5' / (CGG)6 / 0.24 / 7H / 290K01, 310J18, (474G04), 804L09 / F-box protein family - Arabidopsis
GBM1176 / 3' / (AT)8 / 0.69 / 5H / 308O01, 475H03, 546J05 / -
GBM1187 / 5' / (CCG)5 / 0.49 / 2H / n.d. / OSJNBa0094O15.18 - rice
GBM1204 / 3' / (GGTT)5 / 0.24 / 1H / 333D10 / unnamed protein (BAA88176) product - rice
GBM1208 / 5' / (AG)6 / 0.24 / 2H / n.d. / -
GBM1212 / 3' / (AGG)5 / 0.65 / 6H / 214C05, 230C05, (256M21), 579A07 / -
GBM1213 / 3' / (TC)17 / 0.65 / 3H / 367P10, 585A09, 686H20 / T3B23.2/T3B23.2 - Arabidopsis
GBM1214 / 3' / (CA)15 / 0.65 / 2H / 83B16, 526A14 / -
GBM1215 / 3' / (AC)12 / 0.65 / 6H / 122P18, 336A17 / -
GBM1218 / 3' / (GA)11 / 0.69 / 2H / 446I23, 489N02, 689F03 / -
GBM1220 / 3' / (CA)10 / 0.65 / 4H / 400G22, 515A20, 528L17 / -
GBM1221 / 3' / (AC)10 / 0.69 / 4H / 352L01, 352L13, 352L14, 352M13, 352M14, 464F12, 650O19 / -
GBM1225 / 3' / (CA)9 / 0.45 / 2H / 343K14 / -
GBM1227 / 3' / (CA)8 / 0.57 / 5H / 79C09, 327G14, 468I23, 468I24 / ER lumen protein retaining receptor -related - Arabidopsis
GBM1229 / 3' / (AC)8 / 0.41 / 5H / 135B11, 293H08 / -
GBM1231 / 3' / (AG)8 / 0.45 / 5H / 258O16, 467M15, 467M16, 562I14 / acyl carrier protein II, chloroplast precursor (ACP II) - barley
GBM1232 / 3' / (CA)8 / 0.45 / 2H / 61A17, 556K01, 585A01 / -
GBM1233 / 3' / (CG)8 / 0.78 / 3H / 41C24, 93E12, 305H14 / putative G10 protein - rice
GBM1234 / 3' / (AT)8 / 0.57 / 1H / 344P22, 591I01 / putative Ste20-related protein kinase - rice
GBM1236 / 5' / (AG)23 / 0.61 / 4H / 69E04, 128C22, 382A12 / -
GBM1238 / 5' / (AC)21 / 0.24 / 3H / 287K19, 365A05, 512J15 / Barwin (wound-induced) protein homolog - barley
GBM1242 / 5' / (AG)13 / 0.57 / 3H / 295N13, 348N09 / P0671D01.12 -rice
GBM1251 / 5' / (AG)10 / 0.49 / 2H / 148B18, 154N19, 231J17 / -
GBM1253 / 5' / (AG)9 / 0.65 / 3H / n.d. / -
GBM1256 / 5' / (GA)8 / 0.45 / 6H / n.d. / putative calcium binding EF-hand protein - barley
GBM1272 / 3' / (TGA)8 / 0.41 / 1H / 242H05, 357M04, 565H08 / -
GBM1274 / 3' / (TCG)7 / 0.24 / 6H / 372G01 / -
GBM1278 / 3' / (GCT)7 / 0.49 / 1H / n.d. / -
GBM1280 / 3' / (CTT)7 / 0.57 / 3H / 350N21, 699B05 / -
GBM1281 / 3' / (GCT)7 / 0.57 / 2H / 545J13, 576O02, 579P15 / OSJNBa0094O15.18 - rice
GBM1299 / 3' / (CAG)6 / 0.49 / 4H / 321D03, 321D08, 550C13, 727D07 / -
GBM1300 / 3' / (ATC)6 / 0.24 / 3H / 114I01, 165K03, 418C22 / putative t-SNARE SED5 - rice
GBM1309 / 5' / (CCG)9 / 0.61 / 2H / n.d. / 60S ribosomal protein L12 (RPL12C) - Arabidopsis
GBM1311 / 5' / (AGC)9 / 0.24 / 1H / n.d. / -
GBM1319 / 5' / (GGC)8 / 0.57 / 6H / n.d. / -
GBM1323 / 5' / (GCC)8 / 0.73 / 4H / n.d. / P0705A05.11 - rice
GBM1326 / 5' / (CTT)8 / 0.69 / 7H / 70H05, 280G12 / -
GBM1334 / 5' / (GGC)8 / 0.49 / 1H / 238N14, 332P15, 779E14 / hypothetical protein - Arabidopsis
GBM1350 / 5' / (CCG)7 / 0.57 / 4H / 145P04, 481H08, 780O22, 780M22 / putative zinc finger protein - barley
GBM1355 / 5' / (GCA)7 / 0.50 / 6H / n.d. / -
GBM1356 / 5' / (GTG)7 / 0.49 / 6H / 251N04, 680C14, 756L24 / RSZp22 splicing factor - Arabidopsis
GBM1359 / 5' / (CCT)7 / 0.49 / 7H / n.d. / Serine/threonine protein phosphatase PP2A-1 -rice
GBM1363 / 5' / (AGG)7 / 0.49 / 5H / 77M24, 374E24, 503G23 / hypothetical protein AAP44689 - rice
GBM1365 / 5' / (GGC)7 / 0.41 / 2H / 73N22, 125K02, 296H16 / expressed protein - Arabidopsis
GBM1371 / 5' / (CGG)7 / 0.41 / 1H / n.d. / -
GBM1382 / 3' / (CTTA)8 / 0.45 / 3H / 194I20, 610G24 / -
GBM1388 / 3' / (CGTA)5 / 0.24 / 4H / 99G23, 375E23, 568K09 / -
GBM1389 / 3' / (GCCT)5 / 0.61 / 6H / 322F17, 375I17, 597P24 / -
GBM1398 / 3' / (CTCA)5 / 0.41 / 5H / 153K06 / -
GBM1399 / 3' / (GACG)5 / 0.24 / 5H / 351N14, 545G11, 553P18 / -
GBM1400 / 3' / (CACG)5 / 0.57 / 6H / 256P11, 501P21, 674B08 / rac GDP-dissociation inhibitor 1 - rice
GBM1404 / 3' / (TATG)5 / 0.61 / 6H / 461I12, 593P09, 662C01 / -
GBM1405 / 3' / (CGCA)5 / 0.69 / 3H / 357K01, 598F23, 626A24, 626H05 / hypothetical protein - Arabidopsis
GBM1411 / 5' / (TCTT)6 / 0.24 / 1H / 564B20, 598M11, 604D05 / GAL83 protein - Solanum tuberosum
GBM1413 / 3' / (TCATA)6 / 0.57 / 3H / 205M01, 612E13, 694H12 / OSJNBa0010K01.19 - rice
GBM1419 / 5' / (CTCAT)5 / 0.61 / 7H / 90N13, 518N09, 690E16 / flavonol synthase-like protein - Arabidopsis
GBM1421 / 3' / (ACACAA)5 / 0.49 / 2H / 287G22 / CAA303712.1 protein - rice
GBM1422 / 5' / (CTGTAT)9 / 0.24 / 4H / 90F15, 594C22, 735P21 / OSJNBa0035O13.3 - rice
GBM1423 / 5' / (CGGCTC)5 / 0.41 / 6H / (214C05), 256M21, 256M22, 317A19, 676C09 / polyubiquitin (UBQ3) - Arabidopsis
GBM1425 / 5' / (GCAGCG)5 / 0.24 / 3H / 190N06, 282K14 / chloroplast precursor (Carbonate dehydratase) - barley
GBM1426 / 5' / (AAGCTC)5 / 0.41 / 5H / n.d. / -
GBM1432 / 5' / (GGT)5(GGC)7 / 0.57 / 7H / n.d. / gibberellin-regulated protein GASA5 precursor - Arabidopsis
GBM1434 / 5' / (AAG)7 / 0.41 / 1H / n.d. / -
GBM1436 / 5' / (CGC)7 / 0.57 / 5H / n.d. / putative ribosomal protein S29 - rice
GBM1438 / 5' / (GC)11 / 0.65 / 5H / n.d. / chlorophyll A-B binding protein 13, chloroplast precursor -petunia
GBM1444 / 5' / (CGG)7n(AGA)7 / 0.73 / 3H / n.d. / -
GBM1448 / 5' / (CT)9 / 0.69 / 4H / n.d. / -
GBM1450 / 5' / (T)10(TG)6 / 0.41 / 3H / n.d. / HGA4 - barley
GBM1451 / 5' / (TCG)7 / 0.57 / 1H / n.d. / -
GBM1452 / 5' / (GTG)7 / 0.57 / 4H / n.d. / zinc finger (C3HC4-type RING finger) protein family - Arabidopsis