Genomic sequence of murine PCP-2/ptprl (NM_011214)
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exon#3’ splice site5’ splice sitent #exon sizeintron sizephasedomain
(bp) (bp)
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1gcggcggccATG GCC CGG….ACT CCC GCA Ggtaagcgcg258-451194141321sig pep
M A R T P A A
2tcctcacagCT GGC TGC ACC….CTG CCC CAT Ggtgagccta452-583132 28551 MAMa
G C T L P H G
3tctctgcagGT GCC TAC TTG….GAG TTT CAGgtgggctgg584-855272 4440 MAMb
A Y L E F Q
4 ttccctcagGTG CTG TTT….TAT CCC TGC Ggtgagtccc856-93782 1071 MAMc
V L F Y P C A
5ttcccacagCA AAG GCC CCT….TTC CTG CAGgtgagcgtc938-1053116 2600 Iga
K A P F L Q
6tctcttcagCTG CAG AGT….ATC GTC AAA Ggtcagccga1054-1228175 4431Igb
R Q S I V K E
7tcgtcgcagAG CCT CCC ACC…AAG TGC GCA Ggtgagtggc1229-1522294102731FN#1
P P T K C A E
8tgtctccagAG CCC ACG AGG….GAT GAA GAT Ggtaagcctg1523-1831309 44461FN#2
P T R D E D V
9cccttccagTG CCT GGT GGG….CAG TAT GAGgtgaacagg1832-1941110 2370FN#3a
P G G Q Y E
10tacccccagATC AGC TAC….AAC ATC TCA Ggtgagcttc1942-2143202 3141FN#3b
I S Y N I S A
11tcttctcagCT CCC AGC TTT….GCC CCC ATC AGgtgagaaag2144-2246103 26442FN#4a
P S F A P I S
12cctgtccag C GTC TAC CAG...CTG AAA GGGgtgaggggc2247-2520274 7940 FN#4b
V Y Q L K Gprot clvg
13tacttccag GAG ACC CGG….GCC AGG AAA Ggtgagtcca 2521-2557 37 7221 FN#4c
E T R A R K A
14absent
15tctccccag CT GCG TGC AAG….ATC CGC AAA GGgtgagtggg2558-2696139 28642Trans mem
A C K I R K G
16**cgctgccag G AGG GAC CGC….TCT TAC TAC CCgtgagtagt 30 12872 wedge
R D R S Y Y P
17cttctgcag G AAG CCA GTG….AGT CCT CGT Ggtaagtact2697-285415812701wedge
K P V S P R G
17atatccacagGG ATA ATG AGC….TGT ATA TAC Ggtgtatata 7536071 wedge
I M S C I Y G
18ttcttgcagGA GAC CAG CGA….GAG TAC GAGgtgggcctg2855-3045191 5350 wedge
D Q R E Y E
19ctttggcag AGT TTC TTT….GTG TCT GCC Tgtgagttct3046-3121 76 3831 D1a
S F F V S A Y
20tgttcacag AT GAT CGA CAC….TAC ATA GACgtgagtgcc3122-3198 7715840 D1b
D R H Y I D
20aatcattaagATT CGG ATA AAC CGA CAAgtaagtatc 1848770D1b2
I R I N RQ
21ctgtttcag GGC TAC CAC….GCC ACT CAA Ggtacctggc3199-3235 37 6591 D1c
G Y H A T Q G
22cgcccccagGG CCA AAG CCT….GTG GGC AGG gtaagcggg3236-3333 98 180D1d
P K P V G R
22agctggggag GGG GGG TTG…GTG AAC CCTgtgctctgg 60 180D1d2
G G L V N P
23gggccccag GTG AAG TGT….CTG GAG CGGgtaagtctc3334-3450117 6870 D1f
V K C L E R
24tttccacag AGA GGT TAC….ATT CAC TGC AGgtggggaca3451-360515521162D1g
R G Y I H C Sstart cat core
25tcccctcag T GCA GGA ACT….CAG ACG GAGgttcggacc3606-3741136 4290 D1h
A G T Q T Eend cat core
26ctgttccagGAA CAA TAT….GAG TTC CAGgtaggggga3742-3891150 16250D1i
E Q Y E F Q
27tctctgcagACG CTG AAC….CTG ACT GACgtgagaatc3892-4065174 15640D2a
T L N L T D
28cctctgcagAGC TAC ACA….TCC GCC TGGgtgaggctc4066-4206141 9330 D2b
S Y T S A W
29gtatcccag CCC TGC TTG….TCT TCT CGGgtgagtgtc4207-4332126 124 0 D2c
P C L S S R
30catcccag CTG CAG GAG….GTG CAT TGT CTgtgagtgct4333-4490158 12802 D2d
L Q E V H C L
31ttcctttag C AAC GGG GGT….GAG ACC ATGgtgaggagc4491-4626136 1940D2e
N G G E T M
32tttcctcag GAT CAG TAT;….TTG AGA TAGcaggcgcct4627-57321107 -
D Q Y L R *