Online Resource 1List of sequences used in phylogenetic analysis. Certain classes are not dispayed (collapsed) in phylogenetic tree (Fig 4).

Class / Code / ITS / LSU / Reference (ITS) / Reference (LSU)
Dothideomycetes / JN943489 JN940376 Sphaceloma krugii / JN943489 / JN940376 / Schoch et al. (2012) / Schoch et al. (2012)
Dothideomycetes / JN943505 JN940387 Elsinoe mimosae / JN943505 / JN940387 / Schoch et al. (2012) / Schoch et al. (2012)
Dothideomycetes / JN942903 JN938886 Cladosporium herbarum / JN942903 / JN938886 / Schoch et al. (2012) / Schoch et al. (2012)
Dothideomycetes / JN942901 JN938884 Cladosporium sphaerospermum / JN942901 / JN938884 / Schoch et al. (2012) / Schoch et al. (2012)
Eurotiomycetes / JN942860 JN938945 Penicillium aurantiogriseum / JN942860 / JN938945 / Schoch et al. (2012) / Schoch et al. (2012)
Eurotiomycetes / JN942853 JN938943 Penicillium hirsutum / JN942853 / JN938943 / Schoch et al. (2012) / Schoch et al. (2012)
Eurotiomycetes / JN942868 JN938922 Aspergillus candidus / JN942868 / JN938922 / Schoch et al. (2012) / Schoch et al. (2012)
Eurotiomycetes / JN942870 JN938918 Aspergillus herbariorum / JN942870 / JN938918 / Schoch et al. (2012) / Schoch et al. (2012)
Eurotiomycetes / JN943432 JN941547 Aphanoascus fulvescens / JN943432 / JN941547 / Schoch et al. (2012) / Schoch et al. (2012)
Eurotiomycetes / JN943451 JN941548 Aphanoascus fulvescens / JN943451 / JN941548 / Schoch et al. (2012) / Schoch et al. (2012)
Eurotiomycetes / JN944032 JN941378 Capronia sp / JN944032 / JN941378 / Schoch et al. (2012) / Schoch et al. (2012)
Eurotiomycetes / JN944031 JN941377 Capronia sp / JN944031 / JN941377 / Schoch et al. (2012) / Schoch et al. (2012)
Geoglossomycetes / AY789313 AY789314 Trichoglossum hirsutum / AY789313 / AY789314 / Wang et al. (2005) / Wang et al. (2005)
Geoglossomycetes / AY789318 AY789317 Geoglossum glabrum / AY789318 / AY789317 / Wang et al. (2005) / Wang et al. (2005)
Geoglossomycetes / AY789304 AY789303 Geoglossum umbratile / AY789304 / AY789303 / Wang et al. (2005) / Wang et al. (2005)
Geoglossomycetes / AY789410 AY789409 Sarcoleotia globosa / AY789410 / AY789409 / Wang et al. (2005) / Wang et al. (2005)
Lecanoromycetes / JN943509 JN939726 Usnea fragilescens / JN943509 / JN939726 / Schoch et al. (2012) / Schoch et al. (2012)
Lecanoromycetes / JN943679 JN939541 Melanohalea subolivacea / JN943679 / JN939541 / Schoch et al. (2012) / Schoch et al. (2012)
Lecanoromycetes / AY611075 AY607787 Hypotrachyna revoluta / AY611075 / AY607787 / Blanco et al. (2004) / Blanco et al. (2004)
Lecanoromycetes / DQ396957 JN941198 Stereocaulon sasakii / DQ396957 / JN941198 / Hognabba et al. (2006) / Schoch et al. (2012)
Leotiomycetes / JN943471 JN939935 Chlorociboria halonata / JN943471 / JN939935 / Schoch et al. (2012) / Schoch et al. (2012)
Leotiomycetes / JN943470 JN939936 Chlorociboria halonata / JN943470 / JN939936 / Schoch et al. (2012) / Schoch et al. (2012)
Leotiomycetes / JN943465 JN939924 Chlorociboria clavula / JN943465 / JN939924 / Schoch et al. (2012) / Schoch et al. (2012)
Leotiomycetes / JN943466 JN939941 Chlorociboria clavula / JN943466 / JN939941 / Schoch et al. (2012) / Schoch et al. (2012)
Leotiomycetes / JN943610 EU940153 Hyaloscypha aureliella / JN943610 / EU940153 / Schoch et al. (2012) / Baral et al. (2009)
Leotiomycetes / JN943611 EU940152 Hyaloscypha aureliella / JN943611 / EU940152 / Schoch et al. (2012) / Baral et al. (2009)
Leotiomycetes / JN033406 JN086709 Ascocoryne cylichnium / JN033406 / JN086709 / Han et al. (2014) / Han et al. (2014)
Leotiomycetes / JN033446 JN086747 Arachnopeziza obtusipila / JN033446 / JN086747 / Han et al. (2014) / Han et al. (2014)
Leotiomycetes / JN033445 JN086746 Arachnopeziza obtusipila / JN033445 / JN086746 / Han et al. (2014) / Han et al. (2014)
Leotiomycetes / JN033436 AB546936 Arachnopeziza aurata / JN033436 / AB546936 / Han et al. (2014) / Hosoya et al. (2011)
Leotiomycetes / JN033393 JN086696 Arachnopeziza aurata / JN033393 / JN086696 / Han et al. (2014) / Han et al. (2014)
Leotiomycetes / JN033435 AB546937 Arachnopeziza aurelia / JN033435 / AB546937 / Han et al. (2014) / Hosoya et al. (2011)
Orbiliomycetes / KT215221 Hyalorbilia brevistipitata / KT215221 / Baral et al. (unpublished)
Orbiliomycetes / KT222442 Hyalorbilia inflatula / KT222442 / Baral et al. (unpublished)
Orbiliomycetes / KT215222 Brachyphoris lignatilis / KT215222 / Baral et al. (unpublished)
Orbiliomycetes / KT215223 Hyalorbilia polypori / KT215223 / Baral et al. (unpublished)
Orbiliomycetes / KP858976 Microdochiella fusarioides / KP858976 / Hernandez-Restrepo et al. (2016)
Orbiliomycetes / DQ494377 Vermispora fusarina / DQ494377 / Chen et al. (unpublished)
Orbiliomycetes / KT215276 Orbilia polyspora / KT215276 / Baral et al. (unpublished)
Orbiliomycetes / KT596782 Orbilia aristata / KT596782 / Baral et al. (unpublished)
Orbiliomycetes / KT222395 Orbilia aristata / KT222395 / Baral et al. (unpublished)
Orbiliomycetes / KT215264 Orbilia hesperidea / KT215264 / Baral et al. (unpublished)
Orbiliomycetes / KT215266 Orbilia cf. vinosa / KT215266 / Baral et al. (unpublished)
Orbiliomycetes / KF741595 Orbilia aurantiorubra / KF741595 / Quijada et al. (2014)
Orbiliomycetes / KT215259 Orbilia phragmotricha / KT215259 / Baral et al. (unpublished)
Orbiliomycetes / KM199780 Orbilia sarraziniana / KM199780 / Qiao et al. (2015)
Orbiliomycetes / DQ491511 DQ470952 Orbilia sp. („vinosa”) / DQ491511 / DQ470952 / James et al. (unpublished) / Spatafora et al. (2006)
Orbiliomycetes / KM199779 Orbilia rosea / KM199779 / Qiao et al. (2015)
Orbiliomycetes / EF445987 Drechslerella brochopaga / EF445987 / Smith et al. (2009)
Orbiliomycetes / EF445992 Drechslerella doedycoides / EF445992 / Smith et al. (2009)
Orbiliomycetes / EF445991 Arthrobotrys paucispora / EF445991 / Smith et al. (2009)
Orbiliomycetes / GU171371 Arthrobotrys scaphoides / GU171371 / Zhang et al. (unpublished)
Orbiliomycetes / EF445994 Arthrobotrys eudermata / EF445994 / Smith et al. (2009)
Orbiliomycetes / EF445990 Gamsylella gephyropaga / EF445990 / Smith et al. (2009)
Orbiliomycetes / KT215238 Orbilia serpentina / KT215238 / Baral et al. (unpublished)
Orbiliomycetes / KT215248 Orbilia carpoboloides / KT215248 / Baral et al. (unpublished)
Orbiliomycetes / KF741604 Orbilia xanthoguttulata / KF741604 / Quijada et al. (2014)
Orbiliomycetes / KT215285 Orbilia eucalypti / KT215285 / Baral et al. (unpublished)
Orbiliomycetes / U72595 AY261178 Orbilia delicatula / U72595 / AY261178 / Pfister et al. (1997) / Li et al. (unpublished)
Orbiliomycetes / KT215282 Orbilia leucostigma / KT215282 / Baral et al. (unpublished)
Orbiliomycetes / KT222384 Lilapila oculispora (ined.) / KT222384 / Baral et al. (unpublished)
Orbiliomycetes / KT222383 Lilapila oculisporella (ined.) / KT222383 / Baral et al. (unpublished)
Orbiliomycetes / KT215220 Lecophagus longisporus / KT215220 / Baral et al. (unpublished)
Orbiliomycetes / KT222385 Lecophagus ellipsoideus (ined.) / KT222385 / Baral et al. (unpublished)
Orbiliomycetes / AY997058 DQ273799 Lecophagus muscicola / AY997058 / DQ273799 / James et al. (2006) / James et al. (2006)
Orbiliomycetes / KU955284 Lecophagus vermicola / KU955284 / Magyar et al. (2016)
Orbiliomycetes / Retiarius superficiaris IMI223459 / Retiarius / in this study / in this study
Orbiliomycetes / Retiarius bovicornutus IMI223460 / Retiarius / in this study / in this study
Orbiliomycetes / GU174293 uncultured fungus ES / GU174293 / Hassett et al. (unpublished)
Orbiliomycetes / KC965667 uncultured fungus ES / KC965667 / Timling et al. (2014)
Orbiliomycetes / KF296873 uncultured fungus ES / KF296873 / Timling et al. (2014)
Orbiliomycetes / KP889859 uncultured fungus ES / KP889859 / Guichon et al. (unpublished)
Orbiliomycetes / EU489983 Uncultured Ascomycota / EU489983 / Hollister et al. (2010)
Orbiliomycetes / EU489994 Uncultured Ascomycota / EU489994 / Hollister et al. (2010)
Orbiliomycetes / EU489947 Uncultured Ascomycota / EU489947 / Hollister et al. (2010)
Orbiliomycetes / KT380069 Amphosoma atroolivacea (ined.) / KT380069 / Hermant et al. (2015)
Orbiliomycetes / KT222387 Amphosoma atroolivacea (ined.) / KT222387 / Baral et al. (unpublished)
Orbiliomycetes / KT222389 Amphosoma resinicola (ined.) / KT222389 / Baral et al. (unpublished)
Orbiliomycetes / KT222388 Amphosoma resinicola (ined.) / KT222388 / Baral et al. (unpublished)
Orbiliomycetes / KT186373 KT186371 Mycoceros antennatissimus / KT186373 / KT186371 / in this study / in this study
Orbiliomycetes / KT186372 KT186370 Mycoceros antennatissimus / KT186372 / KT186370 / in this study / in this study
Pezizomycetes / KM215630 Trichophaea sp. / KM215630 / Raja et al. (2015)
Pezizomycetes / JN942777 JN941091 Otidea tuomikoskii / JN942777 / JN941091 / Hansen et al. (unpublished) / Hansen et al. (unpublished)
Pezizomycetes / FJ404767 Otidea subterranea / FJ404767 / Smith et al. (2009)
Pezizomycetes / DQ491495 AY544654 Aleuria aurantia / DQ491495 / AY544654 / James et al. (unpublished) / Lutzoni et al. (2004)
Pezizomycetes / EU552114 Conoplea fusca / EU552114 / Marincowitz et al. (2008)
Saccharomycetes / AY342214 Candida africana / AY342214 / Lachance et al. (unpublished)
Saccharomycetes / L28817 YSARRB Candida albicans / L28817 / YSARRB / Srikantha et al. (1994)
Saccharomycetes / AF405231 Candida dubliniensis / AF405231 / Kim et al. (unpublished)
Saccharomycetes / JQ277730 Saccharomyces cerevisiae / JQ277730 / Stumpferl et al. (2012)
Saccharomycetes / KM029995 Saccharomyces cerevisiae / KM029995 / Springer et al. (unpublished)
Saccharomycetes / FN812686 Candida orthopsilosis / FN812686 / Riccombeni et al. (unpublished)
Saccharomycetes / KT282393 Candida parapsilosis / KT282393 / Golda et al. (unpublished)
Sordariomycetes / JN943635 JN940829 Pestalotiopsis clavispora / JN943635 / JN940829 / Maharachchikumbura et al. (unpublished) / Schoch et al. (2012)
Sordariomycetes / JN943633 JN940831 Pestalotiopsis clavispora / JN943633 / JN940831 / Maharachchikumbura et al. (unpublished) / Schoch et al. (2012)
Sordariomycetes / JF414838 JF414887 Magnaporthe savinii / JF414838 / JF414887 / Zhang et al. (2011) / Zhang et al. (2011)
Sordariomycetes / JF414827 JF414876 Magnaporthe poae / JF414827 / JF414876 / Zhang et al. (2011) / Zhang et al. (2011)
Sordariomycetes / JF414845 JF414894 Magnaporthe rhizophila / JF414845 / JF414894 / Zhang et al. (2011) / Zhang et al. (2011)
Sordariomycetes / JF414846 JF414895 Gaeumannomyces incrustans / JF414846 / JF414895 / Zhang et al. (2011) / Zhang et al. (2011)
Sordariomycetes / JN942174 JN940036 Lasiosphaeris hispida / JN942174 / JN940036 / Schoch et al. (2012) / Schoch et al. (2012)
Sordariomycetes / JN942172 JN940038 Lasiosphaeris hispida / JN942172 / JN940038 / Schoch et al. (2012) / Schoch et al. (2012)
Sordariomycetes / JN942184 JN940028 Lasiosphaeris sp / JN942184 / JN940028 / Schoch et al. (2012) / Schoch et al. (2012)
Sordariomycetes / JN942166 JN940027 Lasiosphaeris sp / JN942166 / JN940027 / Schoch et al. (2012) / Schoch et al. (2012)
Sordariomycetes / JN942332 JN940846 Chrvsooorthe zambiensis / JN942332 / JN940846 / Schoch et al. (2012) / Schoch et al. (2012)
Sordariomycetes / JN942341 JN940855 Chrysoporthe deuterocubensis / JN942341 / JN940855 / Schoch et al. (2012) / Schoch et al. (2012)
Sordariomycetes / JN943357 JN941452 Hypocrea gelatinosa / JN943357 / JN941452 / Schoch et al. (2012) / Schoch et al. (2012)
Sordariomycetes / JN943358 JN941453 Hypocrea gelatinosa / JN943358 / JN941453 / Schoch et al. (2012) / Schoch et al. (2012)
Sordariomycetes / JN943311 JN941398 Cordyceps tuberculata / JN943311 / JN941398 / Schoch et al. (2012) / Schoch et al. (2012)
Sordariomycetes / JN943301 JN941388 Cordyceps nipponica / JN943301 / JN941388 / Schoch et al. (2012) / Schoch et al. (2012)
Sordariomycetes / HQ840389 HQ840380 Neonectria neomacrospora / HQ840389 / HQ840380 / Zhao et al. (2011) / Schoch et al. (2012)
Sordariomycetes / HM054157 HM042435 Neonectria ramulariae / HM054157 / HM042435 / Zhao et al. (2011) / Zhao et al. (2011)
Sordariomycetes / HQ840384 HQ840377 Neonectria fuckeliana / HQ840384 / HQ840377 / Zhao et al. (2011) / Schoch et al. (2012)
Sordariomycetes / HQ840385 HQ840381 Neonectria fuckeliana / HQ840385 / HQ840381 / Zhao et al. (2011) / Schoch et al. (2012)
Sordariomycetes / JN943104 JN099189 Cylindrocladiella lageniformis / JN943104 / JN099189 / Schoch et al. (2012) / Lombard et al. (2012)
Sordariomycetes / JN943094 JN099191 Cylindrocladiella peruviana / JN943094 / JN099191 / Schoch et al. (2012) / Lombard et al. (2012)
Sordariomycetes / GU227825 JN940808 Colletotrichum dematium / GU227825 / JN940808 / Damm et al. (2009) / Schoch et al. (2012)
Sordariomycetes / JN943479 JN939916 Colletotrichum lupini / JN943479 / JN939916 / Schoch et al. (2012) / Schoch et al. (2012)
Sordariomycetes / JN943477 JN939913 Colletotrichum fioriniae / JN943477 / JN939913 / Schoch et al. (2012) / Schoch et al. (2012)
Sordariomycetes / GU227808 JN940811 Colletotrichum spaethianum / GU227808 / JN940811 / Damm et al. (2009) / Schoch et al. (2012)

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