Supplementary Table 3. Cyclophilin Sequences in P.Ramorum Obtained by Analysis of The

Supplementary Table 3. Cyclophilin sequences in P.ramorum obtained by analysis of the P.ramorum draft genome v1.1. The lengths shown represent the number of amino acid (AA) residues. Lengths of sequences with incomplete ORFs are shown (>) while lengths of sequences with possible upstream or downstream exons are denoted (≥).The homologs of PnCyPA and PnCyPB are Pr1 and Pr2 respectively.

Names / JGI Protein code / Locus / No. of introns / Length
(AA) / Predicted molecular weight (kDa) / Availability of P.sojae ESTs / TargetP predicted localization / Additional notes
Pr1 / 71262 / 10:473338-473853 / 0 / 171 / 18.3 / Yes / -
Pr2 / 72076 / 82: 20390-19697 / 1 / 206 / 22.1 / Yes / Secretory pathway / Extended 5' and 3' coding sequence
Pr3 / 96143 / 64: 209292-210130 / 5 / 163 / 18.0 / Yes / -
Pr4 / 49107 / 44: 382544-381969 / 0 / 226 / 22.4 / Yes / - / Extended 5' coding sequence.
Pr5-1 / 41857 / 142: 8222-9320 / 5 / 198 / 21.3 / - / Sequence is identical to Pr5-2
Pr5-2 / 41862 / 142: 19093-17999 / 5 / 198 / 21.3 / - / Sequence is identical to Pr5-1
Pr6 / 49920 / 5: 584714-585383 / 1 / 201 / 21.4 / Yes / Mitochondria / Combined two gene models
Pr7 / 76404 / 18: 81316-82083 / 0 / 256 / 28.1 / Secretory pathway
Pr8 / 84191 / 106: 15091-13841 / 1 / 337 / 36.4 / Yes / Mitochondria / Extended 5' and 3' coding sequence
Pr9 / 73837 / 5: 160247-158705 / 4 / 407 / 44.6 / Yes / -
Pr10 / 53850 / 85: 14720-16135 / 0 / 472 / 54.2 / Secretory pathway / Extended 3’ coding sequence
Pr11 / 39435 / 107: 29263-27688 / 0 / 479 / 52.3 / Yes / -
Pr12 / 53963 / 87: 53919-53268 / 2 / ≥165 / 18.4 / - / Extended 5’ and 3’ coding region
Pr13 / 43509 / 19: 301464-299566 / 0 / 633 / 70.2 / - / Extended 5' and 3' coding sequence
Pr14 / 44162 / 20: 502776-503312 / 0 / > 179
Pr15 / 39387 / 106: 21692-20813 / 5 / 189 / 20.8
Pr16 / 71235 / 9: 363478 - 362569 / 3 / 173 / 20.0 / Yes / - / Lacks an exon compared to P.sojae sequence. Possible mutation at intron/exon junction
Pr17 / 38898 / 1: 134086-135254 / 2 / 340 / 37.6 / -
Pr18 / 42585 / 160: 44230-46502 / 6 / 555 / 62.2 / - / Added exon and extended 5' sequence. Incomplete 5’ end.
Pr19 / 53003 / 76: 182462 -183260 / 5 / ≥164
Pr20 / 85031 / 134: 84194-85627 / 1 / 451 / 50.7 / -