Bulletin of Insectology Supplemental Material (supplement 1)
Title: Distribution and genetic variability of Staphylinidae across a gradient of anthropogenically influenced insular landscapes
Authors: José A. P. Marcelino, Rosanna Giordano, Paulo A. V. Borges, Patricia V. Garcia, Felipe N. Soto-Adames, António O. Soares
Bulletin of Insectology, Volume 69 June 2016 pages 117-126
Figure S1. Distribution of Staphylinidae biodiversity per island sampled in the Azores.
Figure S2. Amino acid saturation plots for Staphylinidae.
Figure S3. Mutational saturation by codon position for each Staphylinidae group.
Figure S4. Geographic distribution of haplotypes per island sampled in the Azores and Staphylinidae species.
Table S1. List of Staphylinidae species found in the Azores.
Table S2. Staphylinidae primers designed for this work.
Table S3. Pairwise distances (%) using amino acid sequence data for haplotypes for each Staphylinidae group.
Table S4. Distribution of haplotypes per island for each Staphylinidae group.
Table S5. Taxonomic classification, source data and Genbank accession numbers for all taxa and haplotypes used in the genetic analysis.
Figure S1. Distribution of Staphylinidae biodiversity. Abundance (grey bars) and species richness (white bars), per island and habitat. Whittaker’s species turnover determined as βW= γj/αij–1, where γj is the total diversity for the eight habitats of island j and αij is the common diversity of habitat i with the other habitats of island j. Island discriminated by decreasing geological age in million years (M. yrs) and habitats discriminated by increasing anthropogenic influence for herbaceous (H) and arborescent (A) habitats (underlined). Data based only on taxonomic identifications.
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Figure S2. Absolute saturation plots, using the mitochondrial COI gene (1265 bp) nucleotide datasets of the four putative monophyletic groups of Staphylinidae, i.e., Tachyporine, Staphylinine, Oxyteline and Omaliine. Saturation level was estimated for each dataset by computing the slope of the linear regression between two given species (slope=1 indicates no saturation, i.e., the lower the slope the higher the saturation). Percent pairwise number of inferred substitutions (X axis) obtained in PAUP, plotted against the pairwise number of observed differences (Y axis) obtained by corrected pairwise distances using the Akaike information criterion implemented in MrBayes.
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Figure S3.Mutational saturation by codon position for each Staphylinidae group using the mitochondrial COI gene (1265 bp) nucleotide datasets.
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Figure S4. Geographic distribution of haplotypes for the following species: Atheta fungi (A); Rugilus orbiculatus orbiculatus (B); Phloenomus punctipennis and Phloenomus sp. (C); Paraphloeostiba gaydahensis (D); Ocypus olens (E); Oligota pumilio (F); Quedius simplicifrons (G); Anotylus nitidifrons (H). Haplotypes identified with the nucleotide sequences. Species origin discriminated as native to the Azores or invasive to the region.
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Table S1.List of Staphylinidae species found in the Azores per island and habitat type.
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Table S2.Staphylinidae primers designed for this work (except when referenced *) for PCR amplification and DNA sequencing of the mitochondrial COI gene. Nomenclature follows Simon et al., 1994.
Primer namea / Positionb / Primer site / Species sequenced / Sequence (5’-3’)C1-J-1718* / 1718 / COI / All / GGA GGA TTT GGA AAT TGA TTA GTT CC
TL2-N-3013-10A* / 3013 / COI / All except Coproporus pulchellus / AAT GCA CTA ATC TGC CAT ATT AG
TL2-N-3007-A* / 3007 / COI / Coproporus pulchellus / TCC AAT GCA CTA ATC TGC CAT ATT AGA AAT TA
C1-N-2182-copr / 2182 / COI / Coproporus pulchellus / TTA AAA TGT AAA CTT CAG GAT GGC C
C1-J-2092-frac / 2092 / COI / Gyrohypnus fracticornis / TAG CYG GAG CTA TCA CTA TAC
C1-N-2182-frac / 2182 / COI / Gyrohypnus fracticornis / AGA ATG TAA CTT CTG GGT GTC C
C1-J-2091-tack / 2091 / COI / Tachyporus nitidulus / TTA GCA GGA GCT ATT ACA ATA
C1-N-2182-tack / 2182 / COI / Tachyporus nitidulus / AAT ATA TAC TTC TGG GTG TCC
C1-J-2092-cort / 2092 / COI / Carpelimus corticinus / TTA GCT GGA GCA ATT ACC ATA T
C1-N-2182-cort / 2182 / COI / Carpelimus corticinus / AAA ATA TAA ACT TCA GGA TGC CC
C1-J-2092-penn / 2092 / COI / Quedius curtipennis / TTA GCA GGT GCA ATC ACT ATA C
C1-N-2182-infir / 2182 / COI / Euplectus infirmus / TAA AAT ATA AAC TTC AGG GTG TCC
C1-J-2092-oscu / 2092 / COI / Oxytelus sculptus / TAG CAG GAG CTA TCA CAA TAT
C1-J-2092-oscu1 / 2092 / COI / Oxytelus sculptus / TAG CAG GTG CAA TTA CTA TAC
C1-N-2182-oscu / 2182 / COI / Oxytelus sculptus / TTA AAA TGT AAA CTT CAG GAT GAC C
C1-N-2182-oscu1 / 2182 / COI / Oxytelus sculptus / AGA ATG TAA ACT TCG GAT GTC C
C1-N-2182-tack1 / 2182 / COI / Tachyporus chrysomelinus / AAT ATA TAC TTC TGG GTG TCC
C1-J-2092-rorb / 2092 / COI / Rugilus orbiculatus orbiculatus / TTA GCA GGA GCA ATC ACA ATA C
C1-N-2182-rorb / 2182 / COI / Rugilus orbiculatus orbiculatus / TAG AAT ATA AAC TTC GGG GTG GCC
C1-J-2092-phlo1 / 2092 / COI / Phloeonomus punctipennis / TTA GCC GGA GCT ATT ACA ATA C
C1-J-2092-phlo2 / 2092 / COI / Phloeonomus punctipennis / TTA GCA GGA GCW AYC ACT ATA C
C1-J-2092-phlo3 / 2092 / COI / Phloeonomus punctipennis / TTA GCA GGA GCT ATT ACT ATA C
C1-J-2092-phlo4 / 2092 / COI / Phloeonomus punctipennis / TAC CCG TTT TAG CAG GAG CTA T
C1-N-2182-phlo1 / 2182 / COI / Phloeonomus punctipennis / TAA AAT ATA AAC TTC TGG ATG CCC
C1-N-2182-phlo2 / 2182 / COI / Phloeonomus punctipennis / TAA AAT ATA GAC TTC TGG GTG ACC
C1-N-2182-phlo3 / 2182 / COI / Phloeonomus punctipennis / TAG AAT ATA TAC TTC TGG ATG TCC
C1-J-2094-atra1 / 2094 / COI / Atheta atramentaria / TTA GCT GGA GCT ATT ACT ATA TTG
C1-J-2094-atra2 / 2094 / COI / Atheta atramentaria / TTG CCG GAG CAA TTA CTA TAC TTC
C1-J-2093-atra3 / 2093 / COI / Atheta atramentaria / CTT GCT GGA GCT ATT ACA ATA CTT
C1-N-2182-atra1 / 2182 / COI / Atheta atramentaria / TAA AAT GTA AAC TTC TGG ATG ACC
C1-N-2182-atra2 / 2182 / COI / Atheta atramentaria / TAAAATATAAACTTCAGGATGTCC
C1-N-2182-atra3 / 2182 / COI / Atheta atramentaria / TAAGAATATACACTTCCGGATGCC
Primer namea / Positionb / Primer site / Species sequenced / Sequence (5’-3’)
C1-J-2092-nit / 2092 / COI / Anotylus nitidifrons / TTG CAG GGG CAA TTA CAA TAC
C1-J-2092-nit1 / 2092 / COI / Anotylus nitidifrons / TAG CAG GAG CAA TTA CTA TAC
C1-N-2183-nit / 2183 / COI / Anotylus nitidifrons / AAA ATG TAT ACT TCA GGA TGT CC
C1-N-2183-nit1 / 2183 / COI / Anotylus nitidifrons / AAA ATA TAA ACT TCA GGA TGC CC
C1-J-2089-afun / 2089 / COI / Atheta fungi / TTG CCG GAG CAA TTA CTA TAC
C1-J-2090-afun1 / 2090 / COI / Atheta fungi / TTA GCY GGA GCT ATT ACA ATA C
C1-N-2182-afun1 / 2182 / COI / Atheta fungi / AAG AAT ATA AAC TTC AGG ATG TCC
C1-J-2090-afun2 / 2090 / COI / Atheta fungi / TTA GCA GGA GCA ATT ACA ATA C
C1-N-2182-afun2 / 2182 / COI / Atheta fungi / TAA AAT ATA AAC TTC TGG ATG CCC
C1-J-2090-afun3 / 2090 / COI / Atheta fungi / TTA GCT GGA GCT ATC ACT ATG C
C1-N-2182-afun3 / 2182 / COI / Atheta fungi / TAA AAT ATA AAC TTC GGG ATG TCC
C1-N-2182-afun4 / 2182 / COI / Atheta fungi / AAA TGT ATA CCT CAG GAT GCC C
C1-J-2205-afun6 / 2205 / COI / Atheta fungi / GGA CAT CCT GAA GTT TAT ATT TTA
C1-J-1948-afun6 / 1948 / COI / Atheta fungi / ATT ACA GTT GTA ATA AAA TTA ACT GC
C1-J-2301-afun7 / 2301 / COI / Atheta fungi / CTT TTG GGT CTT TAG GAA TAA TCT AT
C1-J-2093-afun4 / 2093 / COI / Atheta fungi / TTAGCAGGAGCTATTACAATAC
C1-J-2093-afun5 / 2093 / COI / Atheta fungi / TTAGCCGGAGCTATTACAATAC
C1-N-2182-afun5 / 2182 / COI / Atheta fungi / TAA AAT GTA TAC CTC AGG ATG CCC
C1-N-2090-afsp20 / 2090 / COI / Atheta fungi / TTA AAA TAT AAA CTT CGG GAT GTC C
C1-N-2090-afsp21 / 2090 / COI / Atheta fungi sp. 2 / TTA GAA TGT AAA CTT CTG GGT GTC C
C1-N-2090-afsp22 / 2090 / COI / Atheta fungi sp. 2 / TTA AAA TAT AAA CTT CAG GAT GGC C
C1-N-1945-afsp1 / 1945 / COI / Atheta fungi sp. 1 / GTT GTA ATG AAA TTT ACG GCA CC
C1-J-2303-afsp1 / 2303 / COI / Atheta fungi sp. 1 / CAT TAG GAA TAA TTT ATG CAA TGA TAG C
C1-J-2206-afsp2 / 2206 / COI / Atheta fungi sp. 2 / GGC CAT CCT GAA GTT TAT ATT TTA A
C1-J-2090-gab / 2090 / COI / Gabrius nigritulus / CTA GCC GGA GCT ATT ACT ATA T
C1-J-2069-gab3 / 2069 / COI / Gabrius nigritulus / TTA GCT GGA GCT ATT ACA ATA C
C1-J-2090-gab1 / 2090 / COI / Paraphloeostiba gayndahensis / TTA GCC GGA GCT ATT ACA ATA C
C1-N-2182-gab1 / 2182 / COI / Paraphloeostiba gayndahensis / TAA AAT ATA AAC TTC AGG GTG ACC
C1-N-2182-gab2 / 2182 / COI / Paraphloeostiba gayndahensis / TAA AA TAT AAA CTT CTG GAT GCC C
C1-N-2182-gab3 / 2182 / COI / Paraphloeostiba gayndahensis / AAG AAT ATA AAC TTC AGG ATG TCC
C1-N-2182-gab4 / 2182 / COI / Paraphloeostiba gayndahensis / TAA AAT GTA TAC CTC AGG ATG CC
C1-J-2093-olen / 2093 / COI / Ocypus olens / CCA GTC TTA GCT GGA GCA ATT ACT ATA C
C1-N-2182-olen / 2182 / COI / Ocypus olens / TAG AAT GTA AAC TTC TGG GTG TCC
C1-J-2093-opar / 2093 / COI / Oligota pumilio / TTA GCT GGA GCT ATT ACA ATA T
C1-N-2093-opar / 2182 / COI / Oligota pumilio / TAG AAT ATA AAC TTC TGG GTG ACC
C1-J-2204-simp1 / 2204 / COI / Quedius simplicifrons / GGA CAT CCA GAA GTT TAC ATT CT
Primer namea / Positionb / Primer site / Species sequenced / Sequence (5’-3’)
C1-N-2020-simp1 / 2020 / COI / Quedius simplicifrons / GCA GTA ATT GCA ACT GAT CAA AC
C1-J-2084-simp2 / 2084 / COI / Quedius simplicifrons / CCT GTA TTA GCA GGT GCA ATC
C1-J-2092-simp3 / 2092 / COI / Quedius simplicifrons / TAG CAG GTG CTA TTA CAA TAC
C1-N-2182-simp3 / 2182 / COI / Quedius simplicifrons / TTA AAA TGT AAA CTT CGG GAT GAC C
C1-J-2092- simp4 / 2092 / COI / Quedius simplicifrons / TAG CAG GTG CTA TTA CAA TAC
C1-J-2090- simp4 / 2309 / COI / Quedius simplicifrons / GAA TAA TCT ACG CAA TAA TAG CGA TTG G
C1-N-2090- simp5 / 1946 / COI / Quedius simplicifrons / AGT CGT GAT AAA ATT CAC TGC TC
C1-J-2042-lus1 / 2042 / COI / Sepedophilus lusitanicus / CAT TTG ATC AGT AGC TAT TAC AGC
C1-N-2182-lus1 / 2182 / COI / Sepedophilus lusitanicus / AAA ATA TAA ACT TCT GGA TGA CC
C1-J-2105-lus2 / 2105 / COI / Sepedophilus lusitanicus / GGA GCT ATC ACT ATA CTT CTT ACA GAT CG
C1-N-2308-lus1 / 2308 / COI / Sepedophilus lusitanicus / CTC ATA CAA CAA ATC CTA AAA TTC C
a With the exception of the first three primers, all others are internal.
b Positions of primers are based on the mitochondrial genome sequence of Drosophila yakuba (Clay and Wolstenholme, 1985), Genbank accession number NC001322.
* TL2-N-3013-10A and TL2-N-3007-A are modifications from TL2-N-3014 (Simon et al.,1994); C1-J-1718 (Simon et al.,1994).
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Table S3.Pairwise distances (%) using amino acid sequence data for haplotypes (N=49) of the putative Staphylinidae species collected in five islands of the Azores. Species origin discriminated as native to the Azores or invasive to the region.
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Table S4. Distribution of COI haplotypes based on nucleotide sequences for putative species collected in the Azores in the four lineages of Staphylinidae. Habitats are indicated as follows, Nat (Natural forests); Inv (Invasive forest); Pro (Production forest); Orc (Orchard); Med (Meadow); Snp (Semi natural pasture); Pas (Pasture); Cor (Corn). Numbers after habitat acronym indicate the number of individual specimens sequenced if >1. Taxa in bold indicate species for which distribution maps were drawn. Species origin discriminated as native to the Azores or invasive to the region.
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Table S5.Taxonomic classification, source data and Genbank accession numbers for all taxa and haplotypes used in the genetic analysis. Sequences of COI generated for this work are coded as ARZ, catalog number in the Artropotheca of the Univ. of the Azores at Ponta Delgada, Portugal
Group / Sub-family / Tribe / Species and haplotype nr. / ARZ nr. / Origin / Genbank nr.Tachyporine / Tachyporinae / Tachyporini / Tachyporus formosus / - / Germany / AJ293031
Tachyporus nitidulus147 / ARZ126 / Sao Miguel island, PT / JX626000
Tachynus proximus / - / Norway / GQ980859
Tachyporusnitidulus124 / AZ252_1 / Sao Miguel island, PT / JX626001
Tachyporusnitidulus124a / AZ252_2 / Sao Miguel island, PT / JX626002
Tachyporusnitidulus 124b / AZ252_3 / Santa Maria island, PT / JX626003
Tachyporus dispar 125 / AZ127_1 / Flores island, PT / JX626004
Tachyporus dispar 125a / AZ127_2 / Flores island, PT / JX626005
Tachyporus dispar 125b / AZ127_3 / Flores island, PT / JX626006
Tachyporus dispar 125c / AZ127_4 / Flores island, PT / JX626007
Sepedophilus lusitanicus 153 / ARZ277 / Santa Maria island, PT / JX626008
Coproporus pulchellus 156 / ARZ281 / São Miguel Island, PT / JX626143
Habrocerinae / / Habrocerus capillaricornis / - / UK / DQ155843
Aleocharinae / Athetini / Atheta vestita / - / Germany / AJ293032
Acronata sp. prope assecla / - / USA / GQ980884
Acronata sp. prope austiniana / - / USA / GQ980886
Lypoglossa lateralis / - / Russia / GQ980887
Mocyta fungi / - / Germany / GQ980888
Mocyta scopula / - / USA / GQ980890
Nehemitropia lividipennis / - / Greece / GQ980892
Strigota ambigua / - / USA / GQ980893
Amischa analis / - / Norway / GQ980895
Amidobia talpa / - / Norway / GQ980898
Atheta (Alaobia) gagatina / - / Norway / GQ980901
Atheta (Alaobia) membranata / - / France / GQ980903
Atheta (Alaobia) pallidicornis / - / Czech Republic / GQ980904
Atheta (Ceritaxa) pervagata / - / Hungary / GQ980906
Atheta (Datomicra) celata / - / Norway / GQ980910
Atheta (Dimetrota) hampshirensis / - / USA / GQ980916
Atheta (Microdota) subtilis / - / Norway / GQ980919
Atheta (Mycetota) pasadenae / - / France / GQ980921
Atheta (ravilla-group) ravilla / - / Norway / GQ980925
Atheta (s. str.) graminicola / - / Norway / GQ980928
Atheta (vaga-group) vaga / - / France / GQ980930
Atheta atramentaria 101 / ARZ798_1 / Sao Miguel island, PT / JX626015
Atheta atramentaria 101a / ARZ798_2 / Sao Miguel island, PT / JX626016
Atheta fungi 103 / ARZ45_1 / Flores island, PT / JX626021
A. fungi 103a / ARZ45_2 / Pico island, PT / JX626022
A. fungi 103b / ARZ45_3 / Santa Maria island, PT / JX626023
A. fungi 104 / ARZ45_4 / Santa Maria island, PT / JX626024
A. fungi 104a / ARZ45_5 / Santa Maria island, PT / JX626025
Group / Sub-family / Tribe / Species and haplotype nr. / ARZ nr. / Origin / Genbank nr.
Tachyporine / Aleocharinae / Athetini / A. fungi 104b / ARZ45_6 / Pico island, PT / JX626026
A. fungi 105 / ARZ45_7 / Flores island, PT / JX626027
A. fungi 105a / ARZ45_8 / Flores island, PT / JX626028
A. fungi 105b / ARZ45_9 / Flores island, PT / JX626029
A. fungi 105c / ARZ45_10 / Sao Miguel island, PT / JX626030
A. fungi 105d / ARZ45_11 / Sao Miguel island, PT / JX626031
A. fungi 105e / ARZ45_12 / Pico island, PT / JX626032
A. fungi 105f / ARZ45_13 / Pico island, PT / JX626033
A. fungi 105g / ARZ45_14 / Pico island, PT / JX626034
A. fungi 105h / ARZ45_15 / Pico island, PT / JX626035
A. fungi 105i / ARZ45_16 / Pico island, PT / JX626036
A. fungi 105j / ARZ45_17 / Santa Maria island, PT / JX626037
A. fungi 105l / ARZ45_18 / Santa Maria island, PT / JX626038
A. fungi 105m / ARZ45_19 / Santa Maria island, PT / JX626039
A. fungi 105n / ARZ45_20 / Terceira island, PT / JX626040
A. fungi 105o / ARZ45_21 / Terceira island, PT / JX626041
A. fungi 105p / ARZ45_22 / Terceira island, PT / JX626042
A. fungi 105q / ARZ45_23 / Terceira island, PT / JX626043
A. fungi 105r / ARZ45_24 / Terceira island, PT / JX626044
A. fungi 105s / ARZ45_25 / Terceira island, PT / JX626045
A. fungi 105t / ARZ45_26 / Terceira island, PT / JX626046
A. fungi 105u / ARZ45_27 / Sao Miguel island, PT / JX626047
A. fungi 105v / ARZ798_3 / Flores island, PT / JX626017
A. fungi 105x / ARZ798_4 / Santa Maria island, PT / JX626018
A. fungi 105z / ARZ798_5 / Santa Maria island, PT / JX626019
A. fungi 105aa / ARZ798_6 / Santa Maria island, PT / JX626020
A. fungi 106 / ARZ45_28 / Sao Miguel island, PT / JX626049
A. fungi sp. 1 108 / ARZ45_29 / Pico island, PT / JX626051
A. fungi sp. 2 109 / ARZ45_30 / Pico island, PT / JX626052
A. fungi 110 / ARZ45_31 / Flores island, PT / JX626053
A. fungi 110a / ARZ45_32 / Flores island, PT / JX626054
A. fungi 110b / ARZ45_33 / Sao Miguel island, PT / JX626055
A. fungi 110c / ARZ45_34 / Sao Miguel island, PT / JX626056
A. fungi 110d / ARZ45_35 / Sao Miguel island, PT / JX626057
A. fungi 110e / ARZ45_36 / Sao Miguel island, PT / JX626058
A. fungi 110f / ARZ45_37 / Pico island, PT / JX626059
A. fungi 110g / ARZ45_38 / Pico island, PT / JX626060
A. fungi 110h / ARZ45_39 / Pico island, PT / JX626061
A. fungi 110i / ARZ45_40 / Pico island, PT / JX626062
A. fungi 110j / ARZ45_41 / Pico island, PT / JX626063
A. fungi 110l / ARZ45_42 / Pico island, PT / JX626064
A. fungi 110m / ARZ45_43 / Santa Maria island, PT / JX626065
A. fungi 110n / ARZ45_44 / Santa Maria island, PT / JX626066
A. fungi 110o / ARZ45_45 / Santa Maria island, PT / JX626067
A. fungi 110p / ARZ45_46 / Flores island, PT / JX626096
A. fungi 111 / ARZ45_47 / Santa Maria island, PT / JX626068
A. fungi 112 / ARZ45_48 / Sao Miguel island, PT / JX626069
A. fungi 113 / ARZ45_49 / Sao Miguel island, PT / JX626070
A. fungi 114 / ARZ45_50 / Terceira island, PT / JX626071
Group / Sub-family / Tribe / Species and haplotype nr. / ARZ nr. / Origin / Genbank nr.
Tachyporine / Aleocharinae / Athetini / Atheta fungi 116 / ARZ45_51 / Flores island, PT / JX626097
Boreophilia hyperborea / - / Russia / GQ980933
Dinaraea aequata / - / Czech Republic / GQ980935
Liogluta nigropolita / - / Russia / GQ980938
Phihygra debilis / - / Norway / GQ980942
Schistoglossa gemina / - / Norway / GQ980947
Stethusa spuriella / - / USA / GQ980951
Tomoglossa ornatella / - / USA / GQ980952
Dadobia immersa / - / Norway / GQ980953
Geostiba circellaris / - / Norway / GQ980954
Hydrosmecta sp. / - / USA / GQ980955
Trichiusa ursina / - / USA / GQ980964
Gymnusini / Gymnusa variegata / - / Romania / GQ980860
Hypocyphtini / Oligota pumilio126 / ARZ296_1 / Sao Miguel island, PT / JX626009
Oligota pumilio126a / ARZ296_2 / Sao Miguel island, PT / JX626010
Oligota pumilio126b / ARZ296_3 / Flores island, PT / JX626011
Oligota pumilio126c / ARZ296_4 / Terceira island, PT / JX626012
Oligota pumilio126d / ARZ296_5 / Santa Maria island, PT / JX626013
Oligota pumilio127 / ARZ296_6 / Terceira island, PT / JX626014
Lomechusini / Zyras collaris / - / Germany / AJ293033
Zyras haworthi / - / Germany / AJ293034
Drusilla canaliculata / - / Austria / AJ293035
Drusilla canaliculata / - / Norway / GQ980873
Pella caliginosa / - / USA / GQ980878
Myllaenini / Myllaena audax / - / USA / GQ980881
Oxypodini / Oxypoda longipes / - / Germany / AJ293036
Haploglossa villosula / - / Germany / AJ293037
Oxypoda praecox / - / Germany / GQ980882
Hoplandriini / Hoplandria lateralis / - / USA / GQ980872
Hoplandriini gen. sp. / - / Ecuador / AJ293039
Placusini / Placusa sp. prope tachyporoides / - / USA / GQ980883
Aleocharini / Aleochara clavicornis / - / Austria / AJ293040
Aleochara laticornis / - / France / AJ293048
Aleochara moerens / - / Norway / GQ980861
Aleochara clavicornis141 / - / Pico island, PT / JX626137
Ecitocharini / Ecitophya gracillima / - / Peru / GQ980863
Faligriini / Cordalia obscura / - / Greece / GQ980864
Homalotini / Bolitochara pulchra / - / Norway / GQ980865
Gyrophaena congrua / - / Norway / GQ980867
Silusida marginella / - / USA / GQ980870
Staphylinine / Paederinae / / Astenus sp. / - / California, USA / GU377362
/ Paederus sp. / - / - / GU377386
Rugilus orbiculatus orbiculatus 131 / ARZ483_1 / Sao Miguel island, PT / JX626072
Rugilus orbiculatus orbiculatus 131a / ARZ483_2 / Flores island, PT / JX626073
Rugilus orbiculatus orbiculatus 131b / ARZ483_3 / Flores island, PT / JX626074
Rugilus orbiculatus orbiculatus 131c / ARZ483_4 / Santa Maria island, PT / JX626075
Rugilus orbiculatus orbiculatus 131d / ARZ483_5 / Santa Maria island, PT / JX626076
Rugilus orbiculatus orbiculatus 131e / ARZ483_6 / Santa Maria island, PT / JX626077
Group / Sub-family / Tribe / Species and haplotype nr. / ARZ nr. / Origin / Genbank nr.
Staphylinine / Paederinae / / Rugilus orbiculatus orbiculatus 131f / ARZ483_7 / Terceira island, PT / JX626078
Rugilus orbiculatus orbiculatus 131g / ARZ483_8 / Pico island, PT / JX626079
Rugilus orbiculatus orbiculatus 131h / ARZ483_9 / Terceira island, PT / JX626080
Rugilus orbiculatus orbiculatus 132 / ARZ483_10 / Pico island, PT / JX626081
Staphylininae / Arrowinini / Arrowinus relictus / - / South Africa / GU377361
Diochini / Diochus sp. / - / - / GU377370
Othiini / Atrecus punctiventris / - / California, USA / GU377365
Othius punctulatus / - / - / GU377385
Platyprosopini / Platyprosopus sp. / - / - / GU377391
Xantholinini / Nudobius pugetanus / - / California, USA / GU377381
Gyrohypnus fracticornis 150 / ARZ181_1 / Sao Miguel island, PT / JX626082
Gyrohypnus fracticornis 157 / ARZ181_2 / Pico Island, PT / JX626083
Staphilinini / Tolmerinus sp. / - / Laos / GU377360
Tympanophorus sp. / - / Kansas, USA / GU377401
Holisus sp. / - / - / GU377375
Belonuchus mimeticus / - / Panama / GU377366
Cafius seminitens / - / California, USA / GU377368
Hesperus sp. / - / Laos / GU377374
Neobisnius occidentoides / - / California, USA / GU377379
Hesperopalpus sp. / - / Laos / GU377388
Acyclophorus sp. / - / Bolivia / GU377355
Anaquedius vernix / - / - / GU377358
Bolitogyrus sp. / - / Costa Rica / GU377367
Indoquedius sp. / - / - / GU377376
Velleius dilatatus / - / - / GU377402
Dinothenarus saphyrinus / - / California, USA / GU377369
Hadropinus fossor / - / South Korea / GU380341
Hadrotes crassus / - / California, USA / GU377373
Naddia sp. / - / Laos / GU377377
Tasgius morsitans / - / - / GU377398
Ocypus olens / - / - / GU377382
Ocypus olens 143 / ARZ145_1 / Sao Miguel island, PT / JX626089
Ocypus olens 143a / ARZ145_2 / Flores island, PT / JX626090
Ocypus olens 143b / ARZ145_3 / Santa Maria island, PT / JX626091
Ocypus olens 143c / ARZ145_4 / Pico Island, PT / JX626092
Ocypus olens 143d / ARZ145_5 / Sao Miguel island, PT / JX626093
Ocypus aethiops 144 / ARZ885_1 / Terceira island, PT / JX626094
Ocypus aethiops 144a / ARZ885_2 / Terceira island, PT / JX626095
Ontholestes murinus / - / - / GU377384
Platydracus cinnamopterus / - / Tennessee, USA / GU377389
Platydracus sp. / - / Laos / GU377390
Tasgius predator / - / - / GU377399
Thinopinus pictus / - / California, USA / GU377400
Atanygnathus acuminatus / - / California, USA / GU377363
Atanygnathus sp. / - / Laos / GU377364
Algon sp. / - / Malaysia / GU377356
Elecatopselaphus / - / Bolivia / GU377371
Gastrisus sp. / - / Panama / GU377372
Nausicotus spectabilis / - / Panama / GU377378
Group / Sub-family / Tribe / Species and haplotype nr. / ARZ nr. / Origin / Genbank nr.
Staphylinine / Staphilinini / Nordus fungicola / - / Panama / GU377380
Oligotergus sp. / - / Costa Rica / GU377383
Xanthopygus sp. / - / Bolivia / GU377403
Xenopygus analis / - / Panama / GU377404
Quediini / Quediocafus insolitus / - / - / GU377392
Quedius antipodus / - / - / GU377393
Quedius cruentus / - / - / GU377394
Quedius molochinus / - / - / GU377396
Quedius picipes / - / - / GU377395
Quedius suturalis / - / - / GU377397
Quedius simplicifrons 133 / ARZ889_1 / Sao Miguel island, PT / JX626084
Quedius simplicifrons 133a / ARZ889_2 / Sao Miguel island, PT / JX626085
Quedius simplicifrons 134 / ARZ889_3 / Santa Maria island, PT / JX626086
Quedius simplicifrons 136 / ARZ391 / Sao Miguel island, PT / JX626108
Quedius simplicifrons 145 / ARZ803_1 / Pico Island, PT / JX626109
Quedius simplicifrons 145a / ARZ803_2 / Terceira island, PT / JX626110
Quedius curtipennis 142 / ARZ163_1 / Pico Island, PT / JX626087
Quedius curtipennis 142a / ARZ163_2 / Sao Miguel island, PT / JX626088
Philonthini / Gabrius nigritulus 118 / ARZ297_1 / Sao Miguel island, PT / JX626105
Gabrius nigritulus 118a / ARZ297_2 / Sao Miguel island, PT / JX626106
Philonthus splendens / - / - / GU377387
Philonthus sp. 1 135 / ARZ396 / Sao Miguel island, PT / JX626107
Omaliine / Omaliinae / Omaliini / Omalium rugatum / - / UK / DQ155962
Dropephylla ioptera / - / UK / DQ155920
Olophrum piceum / - / UK / DQ155842
Dropephylla vilis / - / UK / DQ155756
Lesteva pubescens / - / UK / DQ156049
Lesteva longoelytrata / - / UK / DQ156029
Lesteva heeri / UK / DQ155752
Anthobium atrocephalum / - / UK / DQ155885
Anthobium unicolor / - / UK / DQ155841
Omalium rivulare / - / UK / DQ155713
Omalium caesum / - / UK / DQ155696
Neophonus sp. / - / UK / DQ222007
Paraphloeostiba gayndahensis 117 / ARZ302_1 / Flores island, PT / JX626098
Paraphloeostiba gayndahensis 117a / ARZ302_2 / Pico island, PT / JX626099
Paraphloeostiba gayndahensis 117b / ARZ302_3 / Pico island, PT / JX626100
Paraphloeostiba gayndahensis 117c / ARZ302_4 / Santa Maria island, PT / JX626101
Paraphloeostiba gayndahensis 117d / ARZ302_5 / Santa Maria island, PT / JX626102
Paraphloeostiba gayndahensis 117e / ARZ302_6 / Santa Maria island, PT / JX626103
Paraphloeostiba gayndahensis 117f / ARZ302_7 / Pico island, PT / JX626104
Paraphloeostiba gayndahensis 117g / ARZ302_8 / Santa Maria island, PT / JX626050
Phloeonomus punctipennis 121 / ARZ793_1 / Sao Miguel island, PT / JX626112
Phloeonomus punctipennis 121 a / ARZ793_2 / Sao Miguel island, PT / JX626113
Phloeonomus punctipennis 121 b / ARZ793_3 / Sao Miguel island, PT / JX626114
Phloeonomus punctipennis 121 c / ARZ793_4 / Sao Miguel island, PT / JX626115
Phloeonomus punctipennis 121 d / ARZ793_5 / Flores island, PT / JX626116
Phloeonomus punctipennis 121 e / ARZ793_6 / Flores island, PT / JX626117
Group / Sub-family / Tribe / Species and haplotype nr. / ARZ nr. / Origin / Genbank nr.
Omaliine / Omaliinae / Omaliini / Phloeonomus punctipennis 121 f / ARZ793_7 / Flores island, PT / JX626118
Phloeonomus punctipennis 123 / ARZ793_8 / Santa Maria island, PT / JX626121
Phloeonomus sp.122 a / ARZ797_1 / Santa Maria island, PT / JX626120
Pselaphinae / Euplecetini / Euplectus nanus / - / UK / DQ155918
Euplectus infirmus 149 / ARZ886 / Terceira island, PT / JX626111
/ Plectophloeus nitidus / - / UK / DQ155919
Proteininae / / Megarthrus depressus / - / UK / DQ156067
/ Metopsia clypeata / - / UK / DQ155840
Glypholomatinae / / Glypholoma sp. / - / UK / DQ222008
Oxyteline / Oxytelinae / Oxytelini / Anotylus anustus / - / UK / DQ156068
Carpelimus elongatulus / - / UK / DQ156050
Carpelimus similis / - / UK / DQ155978
Carpelimus bilineatus / - / UK / DQ155950
Carpelimus corticinus 148 / ARZ796 / Flores island, PT / JX626122
Anotylus tetracarinatus / - / UK / DQ155804
Carpelimus corticinus / - / UK / DQ155778
Anotylus sculpturatus / - / UK / DQ155747
Platystethus arenarius / - / UK / DQ155733
Anotylus rugosus / - / UK / DQ155729
Anotylus nitidrifons 137 / ARZ283_1 / Pico Island, PT / JX626131
Anotylus nitidifrons 138 / ARZ283_2 / Terceira island, PT / JX626123
Anotylus nitidifrons 138a / ARZ283_3 / Terceira island, PT / JX626124
Anotylus nitidifrons 138b / ARZ283_4 / Flores island, PT / JX626125
Anotylus nitidifrons 138c / ARZ283_5 / Flores island, PT / JX626126
Anotylus nitidifrons 138d / ARZ283_6 / Santa Maria island, PT / JX626127
Anotylus nitidifrons 138e / ARZ283_7 / Pico Island, PT / JX626128
Anotylus nitidifrons 138f / ARZ283_8 / Sao Miguel island, PT / JX626129
Anotylus nitidifrons 138g / ARZ283_9 / Sao Miguel island, PT / JX626130
Anotylus nitidifrons 139 / ARZ283_10 / Sao Miguel island, PT / JX626132
Anotylus nitidifrons 139a / ARZ283_11 / Flores island, PT / JX626133
Anotylus nitidifrons 139b / ARZ283_12 / Flores island, PT / JX626134
Anotylus nitidifrons 139c / ARZ283_13 / Flores island, PT / JX626135
Oxytelus sculptus 128 / ARZ284_1 / Sao Miguel island, PT / JX626138
Oxytelus sculptus 129 / ARZ284_2 / Sao Miguel island, PT / JX626139
Oxytelus sculptus 129a / ARZ284_3 / Sao Miguel island, PT / JX626140
Oxytelus sculptus 129b / ARZ284_4 / Sao Miguel island, PT / JX626141
Oxytelus sculptus 130 / ARZ284_5 / Pico Island, PT / JX626142
Blediini / Bledius femoralis / - / UK / DQ222015
Scaphidiinae / Brachynopus scutellaris / - / New Zealand / JQ267152
Scaphidium quadrimaculatum / - / UK / DQ221993
Outgroup / Infraorder / Family / Species / Origin / Genbank nr.
Staphyliniformia / Histeridae / Notosaprinus sp. / - / KF801964
- Not assigned to a Tribe in Genbank