Conservation: Hsa Mmu Rno Gga Dre Tni Fru Xtr Xla Cel Dme

Chen et al., Suppl. Table 3, p. 9

Conservation: hsa mmu rno gga dre tni fru xtr xla cel dme

dre-let-7e TGAGGTAGTAGATTGAATAGTT

dre-let-7f TGAGGTAGTAGATTGTATAGTT

dre-let-7g TGAGGTAGTAGTTTGTATAGTT

dre-let-7a TGAGGTAGTAGGTTGTATAGTT

dre-let-7d TGAGGTAGTTGGTTGTATGGTT

dre-let-7c TGAGGTAGTAGGTTGTATGGTT

dre-let-7i TGAGGTAGTAGTTTGTGCTGTT

dre-let-7h TGAGGTAGTAAGTTGTGTTGTT

dre-let-7b TGAGGTAGTAGGTTGTGTGGTT

********* *** ***

Conservation: hsa mmu rno gga dre tni fru xtr xla

dre-miR-17a CAAAGTGCTTACAGTGCAGGTA-

dre-miR-17b CAAAGTGCTCACAGTGCAGGTAG

dre-miR-20 TAAAGTGCTTATAGTGCAGGTAG

dre-miR-93 AAAAGTGCTGTTTGTGCAGGTA-

dre-miR-18a TAAGGTGCATCTAGTGCAGATA

dre-miR-18b TAAGGTGCATTTAGTGCAGATA

dre-miR-18c TAAGGTGCATCTTGTGTAGTTA

** **** *** ** **

Conservation: hsa mmu rno gga dre tni fru xla

dre-miR-16b TAGCAGCACGTAAATATTGGAG

dre-miR-16c TAGCAGCATGTAAATATTGGAG

dre-miR-16a TAGCAGCACGTAAATATTGGTG

dre-miR-457a AAGCAGCACATCAATATTGGCA

dre-miR-457b AAGCAGCACATAAATACTGGAG

******* * **** ***

Conservation: hsa mmu rno gga dre tni fru xtr

dre-miR-27d TTCACAGTGGCTAAGTTCTTCA

dre-miR-27b TTCACAGTGGCTAAGTTCTGCA

dre-miR-27c TTCACAGTGGTTAAGTTCTGC-

dre-miR-27a TTCACAGTGGCTAAGTTCCGCT

dre-miR-27e TTCACAGTGGCTAAGTTCAGTG

********** *******

Conservation: hsa mmu rno gga dre tni fru xtr

dre-miR-30d TGTAAACATCCCCGACTGGAAG

dre-miR-30a TGTAAACATTCCCGACTGGAAG

dre-miR-30e TGTAAACATCCTTGACTGGAAG

dre-miR-30c TGTAAACATCCTACACTCTCAG

dre-miR-30b TGTAAACATCCTACACTCAGCT

********* * ***

Conservation: hsa mmu rno gga dre tni fru xtr xla cel dme

dre-miR-200c TAATACTGCCTGGTAATGATGC

dre-miR-200b TAATACTGCCTGGTAATGATGA

dre-miR-141 TAACACTGTCTGGTAACGATGC

dre-miR-200a TAACACTGTCTGGTAACGATGT

dre-miR-z19 TAATACTGTCTGGTAATGCCGT

*** **** ******* * *

Conservation: dre tni fru xla

dre-miR-430a TAAGTGCTATTTG-TTGGGGTAG

dre-miR-430i TAAGTGCTATTTG-TTGGCGTAG

dre-miR-430c TAAGTGCTTCTCT-TTGGGGTAG

dre-miR-430b AAAGTGCTATCAAGTTGGGGTAG

dre-miR-430j AAAGTGCTATCAAATTGGGGTA-

******* **** ***

Conservation: hsa mmu rno gga dre tni fru xtr xla cel dme

dre-miR-10c TACCCTGTAGATCCGGATTTGT-

dre-miR-10a TACCCTGTAGATCCGAATTTGT-

dre-miR-10b TACCCTGTAGAACCGAATTTGTG

dre-miR-10d TACCCTGTAGAACCGAATGTGTG

*********** *** ** ***

Conservation: hsa mmu rno gga dre tni fru xtr xla

dre-miR-19b TGTGCAAATCCATGCAAAACTGA

dre-miR-19a TGTGCAAATCTATGCAAAACTGA

dre-miR-19d TGTGCAAACCCATGCAAAACTGA

dre-miR-19c TGTGCAAATCCATGCAAAACTCG

******** * **********

Conservation: hsa mmu rno gga dre tni fru xtr xla cel dme

dre-miR-25 CATTGCACTTGTCTCGGTCTGA

dre-miR-92a TATTGCACTTGTCCCGGCCTGT

dre-miR-92b TATTGCACTCGTCCCGGCCTCC

******** *** *** **

Conservation: hsa mmu rno gga dre tni fru xtr

dre-miR-125b TCCCTGAGACCCT-AACTTGTGA

dre-miR-125c TCCCTGAGACCCT-AACTCGTGA

dre-miR-125a TCCCTGAGACCCTTAACCTGTG

************* *** ***

Conservation: hsa mmu rno gga dre tni fru xtr xla

dre-miR-130c CAGTGCAATATTAAAAGGGCAT

dre-miR-130a CAGTGCAATGTTAAAAGGGCAT

dre-miR-130b CAGTGCAATAATGAAAGGGCAT

********* * *********

Conservation: hsa mmu rno gga dre tni fru xtr xla cel dme

dre-miR-133b TTTGGTCCCCTTCAACCAGCTA

dre-miR-133a TTTGGTCCCCTTCAACCAGCTG

dre-miR-133c TTTGGTCCCTTTCAACCAGCTA

********* ***********

Conservation: hsa mmu rno gga dre tni fru xtr

dre-miR-153c TTGCATAGTCACAAAAATGATC

dre-miR-153a TTGCATAGTCACAAAAGTGATC

dre-miR-153b TTGCATAGTCACAAAAATGAGC

**************** *** *

Conservation: hsa mmu rno gga dre tni fru xtr xla

dre-miR-181c CACATTCATTGCTGTCGGTGGG-

dre-miR-181b AACATTCATTGCTGTCGGTGGG-

dre-miR-181a AACATTCAACGCTGTCGGTGAGT

******* ********** *

Conservation: hsa mmu rno gga dre tni fru xtr xla

dre-miR-301c CAGTGCAATAGTATTGTCATAG

dre-miR-301a CAGTGCAATAGTATTGTCAAAG

dre-miR-301b CAGTGCAATAGTATTGTCATTG

******************* *

Conservation: hsa mmu rno gga dre tni fru xtr xla cel dme

dre-miR-1 TGGAATGTAAAGAAGTATGTAT

dre-miR-206 TGGAATGTAAGGAAGTGTGTGG

********** ***** ***

Conservation: hsa mmu rno gga dre tni fru xtr xla dme

dre-miR-7a TGGAAGACTAGTGATTTTGTTGT

dre-miR-7b TGGAAGACTTGTGATTTTGTTGT

********* *************

Conservation: hsa mmu rno gga dre tni fru

dre-miR-15a TAGCAGCACAGAATGGTTTGTG

dre-miR-15b TAGCAGCACATCATGGTTTGTA

********** *********

Conservation: hsa mmu rno gga dre tni fru xtr

dre-miR-22a AAGCTGCCAGCTGAAGAACTGT

dre-miR-22b AAGCTGCCAGTTGAAGAGCTGT

********** ****** ****

Conservation: hsa mmu rno gga dre tni fru xtr

dre-miR-23a ATCACATTGCCAGGGATTTCCA

dre-miR-23b ATCACATTGCCAGGGATTACCA

****************** ***

Conservation: hsa mmu rno gga dre tni fru xtr xla

dre-miR-26b TTCAAGTAATCCAGGATAGGTT

dre-miR-26a TTCAAGTAATCCAGGATAGGCT

******************** *

Conservation: hsa mmu rno gga dre tni fru xtr cel dme

dre-miR-29b TAGCACCATTTGAAATCAGTGT

dre-miR-29a TAGCACCATTTGAAATCGGTTA

***************** **

Conservation: hsa mmu rno gga dre tni fru xtr cel dme

dre-miR-99 AACCCGTAGATCCGATCTTGTG

dre-miR-100 AACCCGTAGATCCGAACTTGTG

*************** ******

Conservation: hsa mmu rno gga dre tni fru xtr

dre-miR-101a TACAGTACTGTGATAACTGAAG

dre-miR-101b TACAGTACTATGATAACTGAAG

********* ************

Conservation: hsa mmu rno gga dre tni fru xtr

dre-miR-103 AGCAGCATTGTACAGGGCTATGA

dre-miR-107 AGCAGCATTGTACAGGGCTATCA

********************* *

Conservation: hsa mmu rno gga dre tni fru xtr

dre-miR-142a-5p CATAAAGTAGAAAGCACTACT-

dre-miR-142b-5p CATAAAGTAGACAGCACTACTA

*********** *********

Conservation: hsa mmu rno gga dre tni fru

dre-miR-146a TGAGAACTGAATTCCATAGATGG

dre-miR-146b TGAGAACTGAATTCCAAGGGTG-

**************** * **

Conservation: hsa mmu rno gga dre tni fru xtr

dre-miR-148 TCAGTGCATTACAGAACTTTGT

dre-miR-152 TCAGTGCATGACAGAACTTTGG

********* ***********

Conservation: hsa mmu rno gga dre tni fru xtr dme

dre-miR-182 TTTGGCAATGGTAGAACTCACA

dre-miR-183 TATGGCACTGGTAGAATTCACT

* ***** ******** ****

Conservation: hsa mmu rno gga dre tni fru xtr

dre-miR-193a AACTGGCCTACAAAGTCCCAGT

dre-miR-193b AACTGGCCCGCAAAGTCCCGCT

******** ********* *

Conservation: hsa mmu rno gga dre tni fru

dre-miR-194a TGTAACAGCAACTCCATGTGG-

dre-miR-194b TGTAACAGCCGCTCCATGTGGA

********* **********

Conservation: hsa mmu rno gga dre tni fru xtr xla

dre-miR-196b TAGGTAGTTTCAAGTTGTTGGG

dre-miR-196a TAGGTAGTTTCATGTTGTTGGG

************ *********

Conservation: hsa mmu rno gga dre tni fru xtr

dre-miR-199-3p-2 -ACAGTAGTCCGCACATTGGTTA

dre-miR-199-3p-1,3 TACAGTAGTCTGCACATTGGTT-

********* ***********

Conservation: hsa mmu rno gga dre tni fru xtr

dre-miR-203b GTGAAATGTTCAGGACCACTTG

dre-miR-203a GTGAAATGTTTAGGACCACTTG

********** ***********

Conservation: hsa mmu rno gga dre tni fru

dre-miR-216b TAATCTCTGCAGGCAACTGTGA

dre-miR-216a TAATCTCAGCTGGCAACTGTGA

******* ** ***********

Conservation: hsa mmu rno gga dre tni fru xtr

dre-miR-218b TTGTGCTTGATCTAACCATGCA

dre-miR-218a TTGTGCTTGATCTAACCATGTG

********************

Conservation: hsa mmu rno gga dre tni fru xtr

dre-miR-221 AGCTACAT-TGTCTGCTGGGTTT

dre-miR-222 AGCTACATCTGGCTACTGGGTC-

******** ** ** ******

Conservation: hsa gga dre fru xtr

dre-miR-454a TAGTGCAATATTGCTAATAGGG

dre-miR-454b TAGTGCAATATTGCTTATAGGG

*************** ******

Conservation: hsa mmu rno gga dre tni fru xtr dme

dre-miR-9 TCTTTGGTTATCTAGCTGTATGA

Conservation: hsa mmu rno gga dre tni fru

dre-miR-21 TAGCTTATCAGACTGGTGTTGGC

Conservation: hsa mmu rno gga dre tni fru xtr xla

dre-miR-24 TGGCTCAGTTCAGCAGGAACAG

Conservation: hsa mmu rno gga dre tni xtr

dre-miR-34 TGGCAGTGTCTTAGCTGGTTGT

Conservation: hsa mmu rno gga dre tni fru xtr

dre-miR-122 TGGAGTGTGACAATGGTGTTTG

Conservation: hsa mmu rno gga dre tni fru xtr xla cel dme

dre-miR-124 TAAGGCACGCGGTGAATGCCAA

Conservation: hsa mmu rno gga dre tni fru xtr xla

dre-miR-126 TCGTACCGTGAGTAATAATGC

Conservation: hsa mmu rno gga dre tni fru

dre-miR-128 TCACAGTGAACCGGTCTCTTTT

Conservation: hsa mmu rno dre tni fru xtr

dre-miR-129 CTTTTTGCGGTCTGGGCTTGCT

Conservation: hsa mmu rno dre tni fru xtr

dre-miR-132 TAACAGTCTACAGCCATGGTCG

Conservation: hsa mmu rno gga dre tni fru xtr

dre-miR-135 TATGGCTTTCTATTCCTATGTG

Conservation: hsa mmu rno gga dre tni fru xtr cel

dre-miR-137 TTATTGCTTAAGAATACGCGTA

Conservation: hsa mmu rno gga dre tni fru

dre-miR-138 AGCTGGTGTTGTGAATCAGGCC

Conservation: hsa mmu rno gga dre tni fru xtr

dre-miR-140 CAGTGGTTTTACCCTATGGTAG

Conservation: hsa mmu rno gga dre tni fru xtr

dre-miR-142a,b-3p TGTAGTGTTTCCTACTTTATGG

Conservation: hsa mmu rno dre fru xtr

dre-miR-143 TGAGATGAAGCACTGTAGCTCT

Conservation: hsa mmu rno gga dre tni fru xtr

dre-miR-144 TACAGTATAGATGATGTACT

Conservation: hsa mmu rno dre fru xtr

dre-miR-145 GTCCAGTTTTCCCAGGAATCCC

Conservation: hsa mmu rno dre

dre-miR-150 TCTCCCAATCCTTGTACCAGTG

Conservation: hsa mmu gga dre

dre-miR-155 TTAATGCTAATCGTGATAGGGG

Conservation: hsa mmu rno gga dre tni fru dme

dre-miR-184 TGGACGGAGAACTGATAAGGGC

Conservation: hsa mmu rno gga dre tni fru

dre-miR-187 TCGTGTCTTGTGTTGCAGCCAG

Conservation: hsa mmu rno gga dre tni fru

dre-miR-190 TGATATGTTTGATATATTAGGT

Conservation: hsa mmu rno dre tni fru

dre-miR-462 TAACGGAACCCATAATGCAGCT

Conservation: hsa mmu rno gga dre

dre-miR-192 ATGACCTATGAATTGACAGCCA

Conservation: hsa mmu rno gga dre tni fru xtr

dre-miR-199-5p CCCAGTGTTCAGACTACCTGTT

Conservation: hsa mmu rno gga dre tni fru xtr

dre-miR-202 AGAGGCATAGGGCATGGGAAAA

Conservation: hsa mmu rno gga dre tni fru xtr

dre-miR-204 TTCCCTTTGTCATCCTATGCCT

Conservation: hsa mmu rno gga dre tni fru

dre-miR-205 TCCTTCATTCCACCGGAGTCTG

Conservation: hsa mmu rno dre tni fru xtr xla dme

dre-miR-210 CTGTGCGTGTGACAGCGGCTAA

Conservation: hsa mmu rno dre tni fru xtr xla

dre-miR-214 ACAGCAGGCACAGACAGGCAGA

Conservation: hsa mmu rno gga dre tni fru xtr

dre-miR-217 TACTGCATCAGGAACTGATTGG

Conservation: hsa mmu rno gga dre tni fru xtr dme

dre-miR-219 TGATTGTCCAAACGCAATTCTT

Conservation: hsa mmu rno gga dre tni fru xtr cel dme

dre-miR-220 CCACAACCGTATCGGACACTTT

Conservation: hsa mmu rno gga dre tni fru

dre-miR-223 TGTCAGTTTGTCAAATACCCCA

Conservation: hsa mmu rno dre tni fru xtr

dre-miR-338 TCCAGCATCAGTGATTTTGTTG

Conservation: hsa mmu rno dre xtr

dre-miR-363 AATTGCACGGTATCCATCTGTA

Conservation: hsa mmu rno gga dre tni fru xtr

dre-miR-365 AATGCCCCTAAAAATCCTTAT

Conservation: hsa mmu rno gga dre tni fru

dre-miR-375 TTTGTTCGTTCGGCTCGCGTTA

Conservation: hsa mmu rno dre tni fru xtr

dre-miR-96 TTTGGCACTAGCACATTTTTGCT

Conservation: hsa mmu rno gga dre tni

dre-miR-z11 AAACCGTTACCATTACTGAGTT

Conservation: gga dre tni fru xtr

dre-miR-460-5p CCTGCATTGTACACACTGTGCG

Conservation: gga dre tni fru xtr

dre-miR-460-3p CACAGCGCATACAATGTGGATG

Conservation: dre

dre-miR-461 TCAGGAATGGGCTAAATGCCAA

Conservation: gga dre xtr

dre-miR-456 CAGGCTGGTTAGATGGTTGTCA

Conservation: gga dre tni fru xtr

dre-miR-458 ATAGCTCTTTGAATGGTACTGC

Conservation: hsa mmu rno dre tni fru

dre-miR-459 TCAGTAACAAGGATTCATCCTG

Conservation: hsa mmu rno gga dre tni fru xtr

dre-miR-455 TATGTGCCCTTGGACTACATCG

Key to species:

hsa Homo sapiens (human)

mmu Mus musculus (mouse)

rno Rattus norvegicus (rat)

gga Gallus gallus (chicken)

xtr Xenopus tropicalis (frog)

xla Xenopus laevis (frog)

fru Fugu rubripes (pufferfish)

tni Tetraodon nigroviridis (pufferfish)

dre Danio rerio (zebrafish)

dme Drosophila melanogaster (fruitfly)

cel Caenorhabditis elegans (nematode)