NBAF Complete bibliography
Please note that the list of publications for 2017 will be completed early 2018.
2017
[NBAF-B]
1. Calosi P, Melatunan S, Turner LM, Artioli Y, Davidson RL, Byrne JJ, Viant MR, Widdicombe S, Rundle SD (2017) Regional adaptation defines sensitivity to future ocean acidification. Nature Communications. (10.1038/ncomms13994)
2. Clark MS, Sommer U, Sihra JK, Thorne MAS, Morley SA, King M, Viant MR, Peck LS (2017) Biodiversity in marine invertebrate responses to acute warming revealed by a comparative multi-omics approach. Global Change Biology 23, 318–330. (10.1111/gcb.13357)
[NBAF-E]
1. Campos J, Qiu S, Guirao-Rico S, Bergero R, Charlesworth D (2017) Recombination changes at the boundaries of fully and partially sex-linked regions between closely related Silene species pairs. Heredity. (10.1038/hdy.2016.113)
2. Eyres I, Duvaux L, Gharbi K, Tucker R, Hopkins D, Simon JC, Ferrari J*, Smadja CM*, Butlin RK* (2017) Targeted re-sequencing confirms the importance of chemosensory genes in aphid host race differentiation. Molecular Ecology 26, 43-58 (10.1111/mec.13818) (*joint senior authors)
3. Clucas GV, Younger JL, Kao D, Rogers AD, Gharbi K, Miller KJ, Hart T (2017) Recognising metapopulation structure in emperor penguins is critical for their future conservation. Molecular Ecology (in press)
4. Gruenheit N, Parkinson K, Stewart B, Howie JA, Wolf JB, Thompson CR (2017) A polychromatic 'greenbeard' locus determines patterns of cooperation in a social amoeba. Nature Communications 25, 14171. (10.1038/ncomms14171)
5. Hahn C,Martin J.Genner,George F.Turner,Domino A.Joyce (submitted) The genomic basis of adaptation to the deep water 'twilight zone' in Lake Malawi cichlid fishes. Evolution Letters. https://doi.org/10.1101/102830
6. Jeffries DL, Copp GH, Maes G, Lawson Handley L, Hänfling B (2017) Genetic evidence challenges the native status of a threatened freshwater fish (Carassius carassius) in England. Ecology and Evolution (in press).
7. Mable BK, Hagmann J, Kim S-T, Adam A, Kilbride E, Weigel D, Stift M (2017) What causes mating system shifts in plants? Arabidopsis lyrata as a case study. Heredity118, 52-63 (10.1038/hdy.2016.99)
8. Mock T, Otillar RP, Strauss J et al (2017) Evolutionary genomics of the cold-adapted diatomFragilariopsis cylindrus. Nature 541, 536–540. (10.1038/nature20803)
9. Schell T, Feldmeyer B, Schmidt H, Greshake B, Tills O, Truebano Garcia M, Rundle SD, Juraj Paule J, Ebersberger I, Pfenninger M (2017) An annotated draft genome for Radix auricularia (Gastropoda, Mollusca). Genome Biology and Evolution. (10.1093/gbe/evx017)
10. Sobczyk MK, Smith JAC, Pollard AJ, Filatov DA (2017) Evolution of nickel hyperaccumulation and serpentine adaptation in the Alyssum serpyllifolium species complex. Heredity 118, 31–41. (10.1038/hdy.2016.93)
11. Timmermans MJTN, Thompson MJ, Collins S, Vogler AP (2017) Independent evolution of sexual dimorphism and female-limited mimicry in swallowtail butterflies (Papilio dardanus and P. phorcas) Molecular Ecology (10.1111/mec.14012)
[NBAF-L]
- Bista I, Carvalho GR, Walsh K, Seymour M, Hajibabaei M, Lallias D, Christmas M, Creer S (2017) Annual time-series analysis of aqueous eDNA reveals ecologically relevant dynamics of lake ecosystem biodiversity. Nature Communications 8, 14087. (10.1038/ncomms14087)
- Høyland-Kroghsbo NM, Paczkowski J, Mukherjee S, Broniewski J, Westra E, Bondy-Denomy J, Bassler BL (2017) Quorum sensing controls the Pseudomonas aeruginosa CRISPR-Cas adaptive immune system. Proc Natl Acad Sci USA 114, 131-135. (10.1073/pnas.1617415113)
3. Morley D, Broniewski JM, Westra ER, Buckling A, van Houte S (2017) Host diversity limits the evolution of parasite local adaptation. Molecular Ecology 14 (10.1111/mec.13917)
4. Plan D, Sanz L, Whiteley G, Wagstaff SC, Harrison RA, Casewell NR, Calvete JJ (2017) What killed Karl Patterson Schmidt? Combined venom gland transcriptomic, venomic and antivenomic analysis of the South African green tree snake (the boomslang), Dispholidus typus. Biochinica et Biophysica Acta. (in press)
[NBAF-S]
1. Almalki, M., K. Kupán, M C Carmona-Isunza, P Lopez, Ana Veiga, A Kosztolányi, T Székely & C Küpper. 2016. Morphological and genetic differentiation among Kentish Plover Charadrius alexandrinus populations in Macaronesia. Ardeola (accepted).
2. Ball AD, van Dijk RE, Lloyd P, Pogány A, Dawson DA, Dorus S, Bowie RCK, Burke T, Székely T (2017) Levels of extra-pair paternity are associated with parental care in penduline tits (Remizidae). Ibis (10.1111/ibi.12446).
3. Barani-Beiranvanda, H., M. Aliabadiana, M. Irestedt, Y. Quc, J. Darvish, T. Székely, R. E. van Dijk, & P. G. P. Ericson. 2017. Phylogeography of Eurasian penduline tits inferred from mitochondrial and microsatellite genotyping. Journal of Avian Biology (accepted).
4. Carmona-Isunza, M C, Ancona, S I., Székely, T, Ramallo-González, A P., Cruz-López, M, Serrano-Meneses, M A & C. Küpper. 2017. Adult sex ratio and operational sex ratio exhibit different temporal dynamics in the wild. Behavioral Ecology (in press).
5. D’Urban Jackson J, dos Remedios N, Maher KH, Zefania S, Haig S, Oyler-McCance S, Blomqvist D, Burke T, Bruford MW, Székely T, Küpper C (2017) Polygamy slows down population divergence in shorebirds. Evolution (accepted). (10.1111/evo.13212)
6. Grinsted L, Field J(2017)Market forces influence helping behaviour in cooperatively breeding paper wasps.Nature Communications(10.1038/ncomms13750)
7. Holland LP,Jenkins TL,Stevens JR (2017) Contrasting patterns of population structure and gene flow facilitate exploration of connectivity in two widely distributed temperate octocorals. Heredity (10.1038/hdy.2017.14)
8. Höglund J, Wang B, Saether SA, Blom M, Fiske P, Halvarsson P, Horsburgh G, Burke T, Kålås JA, Ekblom R (2017) Blood transcriptomes and de novo identification of candidate loci for mating success in lekking great snipe (Gallinago media). Molecular Ecology. In press.
9. Maher KH, Eberhart-Phillips L, Kosztolányi A, Dos Remedios N, Carmona-Isunza MC, Cruz-López M, Zefania S, James St Clair J, AlRashidi M, Weston MA, Serrano-Meneses MA, Krüger O, Hoffman JI, Székely T, Burke T, Küpper C (2017)High fidelity: extra-pair fertilisations in eight Charadrius plover species are not associated with parental relatedness or social mating system. Journal of Avian Biology. (In press).
10. Mátics R, Hoffmann, Gy, Frantz AC, Dawson DA, Klein Á (2017) Demographic decline and detection of genetic bottleneck in a population of barn owl, Tyto alba, in Hungary. Journal of Ornithology. In press.
11. Mira O, Sánchez-Prieto CB, Dawson DA, Burke T, Tinaut A, Martínez JG (2017) Parnassius apollo nevadensis: identification of recent population structure and source–sink dynamics. Conservation Genetics. (10.1007/s10592-017-0931-0)
12. Moura RF, Dawson DA, Monnerat Nogueira D (2017) The use of microsatellite markers in Neotropical studies of wild birds: a literature review.Annals of the Brazilian Academy of Sciences. (10.1590/0001-3765201620160378)
13. Pantoja PO, Simon-Porcar VI, Puzey JR, Vallejo-Marin M (2017) Genetic variation and clonal diversity in introduced populations of Mimulus guttatus assessed by genotyping at 62 single nucleotide polymorphism loci. Plant Ecology & Diversity. DOI: 10.1080/17550874.2017.1287785 In press.
14. Reynolds SJ, Galbraith JA, Smith JA, Jones DN (In revision) Backyard Bird Feeding: A North-South Comparison provides Valuable Insights into this Global Urban Phenomenon. Frontiers in Ecology and Evolution.
15. Vincze, O., A. Kosztolányi, Z. Barta, C. Küpper, Monif Alrashidi, Juan A. Amat, Araceli Arguelles Tico, Fiona Burns, John Cavitt, Warren C. Conway, Medardo Cruz-Lopez, Atahualpa Eduardo Desucre-Medrano, Natalie dos Remedios, Jordi Figuerola, Daniel Galindo-Espinosa, Gabriel E. Garcıa-Pena, Salvador Gomez Del Angel, Cheri Gratto-Trevor, Paul Jonsson, Penn Lloyd, Tomas Montalvo, Jorge Enrique Parra, Raya Pruner, Pinjia Que, Yang Liu, Sarah T. Saalfeld, Rainer Schulz, Lorenzo Serra, James J. H. St Clair, Lynne E. Stenzel, Michael A. Weston, Maı Yasue, Sama Zefania & T. Székely (2017) Parental cooperation in a changing climate: fluctuating environments predict shifts in care division. Global Ecology and Biogeography 26, 347–358. (10.1111/geb.12540)
Theses
1. Moran P (2017) PhD Thesis (University of St Andrews) A behavioural and genomic approach to studying the evolution of reproductive isolation: a contact zone between closely related field crickets in the genus Teleogryllus. (NBAF-E)
Talks
Kidner C Mining herbariums with hybrid baits. BBSRC STARS Bioinformatics Winter School - 16 March 2017 (NBAF-E)
Isabel Santos Magalhaes, Christoph Hahn, Andrea Robson, Alan Smith, Marcel Haesler, Kyle Young, Martin Genner, Domino Joyce. The genomics of polymorphism in a sexually selected trait, Population Genetics Group meeting, Cambridge Janaury 2017. (NBAF-E)
2016
[Joint nodes]
1. Kim K-W, Griffith S, Burke T (2016) Linkage mapping of a polymorphic plumage locus associated with intermorph incompatibility in the Gouldian finch (Erythrura gouldiae). Heredity 116, 409-416. (10.1038/hdy.2015.114) [NBAF-E/S]
2. Küpper C, Stocks M, Risse JE, dos Remedios N, Farrell LL, McRae SB, Morgan TC, Karlionova N, Pinchuk P, Verkuil YI, Kitaysky AS, Wingfield JC, Piersma T, Zeng K, Slate J, Blaxter M, Lank DB, Burke T (2016) A supergene determines highly divergent male reproductive morphs in the ruff. Nature Genetics 48, 79-83. (10.1038/ng.3443) [NBAF-E/S]
3. Meyer-Lucht Y, Mulder KP, James MC, McMahon BJ, Buckley K, Piertney SB, Hoglund J (2016) Adaptive and neutral genetic differentiation among Scottish and endangered Irish red grouse (Lagopus lagopus scotica). Conservation Genetics 17, 615-630 1–16. (10.1007/s10592-016-0810-0) [NBAF-E/S]
4. Wenzel MA, Douglas A, James MC, Redpath SM, Piertney SB (2016) The role of parasite-driven selection in shaping landscape genomic structure in red grouse (Lagopus lagopus scotica). Molecular Ecology 25, 324-341. (10.1111/mec.13473) [NBAF-E/S]
[NBAF-B]
1. Davidson RL, Weber RJM, Liu H, Sharma-Oates A, Viant MR (2016) Galaxy-M: A galaxy workflow for processing and analysing direct infusion and liquid chromatography mass spectrometry-based metabolomics data. GigaScience 5, 10. (10.1186/s13742-016-0115-8)
2. Edison AS, Hall RD, Junot C, Karp PD, Kurland IJ, Mistrik R, Reed LK, Saito K, Salek RM, Steinbeck C, Sumner LW, Viant MR (2016) The time is right to focus on model organism metabolomes. Metabolites 6, 8. (10.3390/metabo6010008)
3. Hao J, Liebeke M, Sommer U, Viant MR, Bundy JG, Ebbels TMD (2016) Statistical correlations between NMR spectroscopy and direct infusion FT-ICR mass spectrometry aid annotation of unknowns in metabolomics. Analytical Chemistry 8, 2583–2589. (10.1021/acs.analchem.5b02889).
4. Molloy JC, Sommer U, Viant MR, Sinkins SP(2016) Wolbachia modulates lipid metabolism in Aedes albopictus mosquito cells. Applied and Environmental Microbiology 82, 3109-20. (10.1128/AEM.00275-16)
[NBAF-E]
1. Brennan AC, Hiscock SJ, Abbott RJ (2016) Genomic architecture of phenotypic divergence between two hybridizing plant species along an elevational gradient. AoB Plants 8, plw022. (10.1093/aobpla/plw022)
2. Brown RP, Paterson S, Risse J (2016) Genomic signatures of historical allopatry and ecological divergence in an island lizard. Genome Biology and Evolution 8, 3618-3626. (10.1093/gbe/evw268)
3. Buckley J, Kilbride E, Cevik V, Vicente JG, Holub EB, Mable BK (2016) R-gene variation across Arabidopsis lyrata subspecies: effects of population structure, selection and mating system. BMC Evolutionary Biology 16, 1-17. (10.1186/s12862-016-0665-5)
4. Chapman MA, Hiscock SJ, Filatov DA (2016) The genomic bases of morphological divergence and reproductive isolation driven by ecological speciation in Senecio (Asteraceae). Journal of Evolutionary Biology 29, 98-113. (10.1111/jeb.12765)
5. Eyres I, Jaquiery J, Sugio A, Duvaux L, Legeai F, Gharbi K, Nelson M, Simon JC, Smadja CM*, Butlin RK*, Ferrari J* (2016) Differential gene expression according to race and host plant in the pea aphid. Molecular Ecology 25, 4197-4215. (10.1111/mec.13771) (*joint senior authors)
6. Fountain T, Ravinet M, Naylor R, Reinhardt K, Butlin RK (2016) A linkage map and QTL analysis for pyrethroid resistance in the bed bug Cimex lectularius. G3: Genes|Genomes|Genetics 6, 4059-4066. (10.1534/g3.116.033092)
5. Giron D, Huguet E, Stone GN, Body M (2016) Insect-induced effects on plants and possible effectors used by galling and leaf-mining insects to manipulate their host-plant. Journal of Insect Physiology 84, 70–89.(10.1016/j.jinsphys.2015.12.009)
6. Glucas GV, Younger JL, Kao D, Rogers AD, Handley J, Miller GD, Jouventin P, Nolan P, Gharbi K, Miller KJ, Hart T (2016) Dispersal in the sub-Antarctic: king penguins show remarkably little population genetic differentiation across their range. BMC Evolutionary Biology 16, 211. (10.1186/s12862-016-0784-z)
7. Hamilton PB, Cowx IG, Oleksiak MF, Griffiths AM, Grahn M, Stevens JR, Carvalho GR, Nicol L, Tyler CR (2016) Population-level consequences for wild fish exposed to sub-lethal concentrations of chemicals – a critical review. Fish and Fisheries Reviews 17, 545–566. (10.1111/faf.12125)
8. Hamilton PB, Rolshausen G, Webster TMU, Tyler CR (2016) Adaptive capabilities and fitness consequences associated with pollution exposure in fish. Philosophical Transactions of the Royal Society B 360, 397–413. (10.1098/rstb.2016.0042).
9. Hart ML,Forrest LL,Nicholls JA,Kidner CA (2016) Retrieval of hundreds of nuclear loci from herbarium specimens. Taxon 65, 1081-1092. (10.12705/655.9)
10. Jeffries DL, Copp GH, Lawson Handley L, Olsén KH, Sayer CD, Hänfling B (2016) Comparing RADseq and microsatellites to infer complex phylogeographic patterns, an empirical perspective in the Crucian carp, Carassius carassius, L. Molecular Ecology 25, 2997-3018. (10.1111/mec.13613)
11. Kazama Y, Ishii K, Aonuma W, Ikeda T, Kawamoto H, Koizumi A, Filatov DA, Chibalina M, Bergero R, Charlesworth D, Abe T, Kawano S (2016) A new physical mapping approach refines the sex-determining gene positions on the Silene latifolia Y-chromosome. Scientific Reports 6, 18917. (10.1038/srep18917)
12. Nevado B, Atchison GW, Hughes CE, Filatov DA (2016) Widespread adaptive evolution during repeated evolutionary radiations in New World lupins. Nature Communications 7, 12384. (10.1038/ncomms12384)
13. Nürnberger B, Lohse K, Fijarczyk A, Szymura JM, Blaxter M (2016) Para-allopatry in hybridizing fire-bellied toads (Bombina bombina and B. variegata): inference from transcriptome-wide coalescence analyses. Evolution 70,1803–1818. (10.1111/evo.12978)
14. Lohse K, Chmelik M, Frantz L, Barton NH (2016) Efficient strategies for calculating likelihoods under the coalescent. Genetics 202, 775-786. (10.1534/genetics.115.183814)
15. Mallon EB, Amarasinghe HE, Ott SR (2016) Acute and chronic gregarisation are associated with distinct DNA methylation fingerprints in desert locusts. Scientific Reports 6, 35608 (10.1038/srep35608)
16. Nicholls JA, Melika G, Stone GN (2016) Sweet tetra-trophic interactions: multiple evolutions of nectar secretion, a defensive extended phenotype in cynipid gallwasps. The American Naturalist 189, 67-77. (10.1086/689399)
17. Ouvrard P, Hicks DM, Mouland M, Nicholls JA, Baldock KCR, Goddard MA, Kunin WE, Potts SG, Thieme T, Veromann E, Stone GN (2016) Molecular taxonomic analysis of the plant associations of adult pollen beetles (Nitidulidae; Meligethinae), and the population structure of Brassicogethes aeneus. Genome 59, 1101-1116. (10.1139/gen-2016-0020)
18. Pascoal S, Mendrok M, Mitchell C, Wilson AJ, Hunt J, Bailey NW (2016) Sexual selection and population divergence I. The influence of socially flexible cuticular hydrocarbon expression in male field crickets (Teleogryllus oceanicus). Evolution 70, 82-97. (10.1111/evo.12839)