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1H, 13C and 15N chemical shift assignments of dihydrofolate reductase from the psychropiezophile Moritella profunda in complex with NADP+ and folate
E. Joel Loveridge, Stella M. Matthews,Christopher Williams, Sara B.-M. Whittaker, Ulrich L. Günther, Rhiannon M. Evans, William M. Dawson, Matthew P. Crump, Rudolf K. Allemann
Figure S1. Enlarged 2D 1H-15N-HSQC spectrum of 1.1 mM uniformly 15N-labelled MpDHFR in the presence of 11 mM each NADP+ and folate in 50 mM potassium phosphate buffer (pH 7.0) containing 100 mM NaCl, 10 mM 2-mercaptoethanol (90% H2O/10% D2O) and saturated with argon. The spectrum was acquired at 291 K on a Varian VNMRS 600 MHz spectrometer equipped with a cryogenically cooled probe. The assignments are labeled by the one-letter code of amino acids accompanied by a sequence number. The side-chain resonances of asparagine and glutamine residues are connected by horizontal lines.
Figure S2. Chemical shift differences between MpDHFR and EcDHFR. Blue symbol represent conserved residues; red symbols represent non-conserved residues.
Figure S3 (next page). 1H-15N HSQC spectra of MpDHFR as the (A) NADP+:folate ternary complex, (B) folate binary complex, (C) dihydrofolate binary complex, (D) NADP+:dihydrofolate ternary complex (prepared by adding equimolar NADP+ to the dihydrofolate binary complex), (E) NADPH binary complex, (F) NADP+:tetrahydrofolate ternary complex (prepared by adding equimolar dihydrofolate to the NADPH binary complex), (G) apo-enzyme and (H) NADP+:folate ternary complex. Spectra were measured using 1.1 mM MpDHFR with 11 mM ligands at 600 MHz (1H) and 291 K. MpDHFR for the spectra in panels A-G was prepared using argon-saturated buffers; MpDHFR for the spectrum in panel H was prepared without use of argon.
Figure S4. Enlargementsof the 2D 1H-15N-HSQC spectrum of MpDHFR prepared without the use of argon-saturated buffers(shown in panel H of Figure S2) demonstrating multiple resonances for some residues. The assignments are labeled by the one-letter code of amino acids accompanied by a sequence number.
Figure S5. (a) Cartoon representation of MpDHFR showing regions where multiple resonances are seen in the 1H-15N-HSQC spectrum when the protein is prepared without the use of argon-saturated buffers (red). Ligands are shown as sticks. (b) Slice though the HNCA (red), HN(CO)CA (green), HNCACB (blue) and CBCA(CO)NH (orange) spectra of MpDHFR at 15N 113.75 ppm showing the splitting of the Cys105 resonances due to the presence of the oxidized and reduced forms. For the oxidized side chain, the chemical shifts are N 113.71 ± 0.07 ppm, HN 7.90 ± 0.00 ppm, CA 55.56 ± 0.14 ppm and CB 43.73 ± 0.13 ppm. For the reduced side chain, the chemical shifts are N 113.77 ± 0.09 ppm, HN 7.81 ± 0.01 ppm, CA 60.70 ± 0.06 ppm and CB 30.35 ± 0.21 ppm.
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