Table S4. Probes used for Southern hybridisation, FISH and fiber-FISH.

Probe / Primer code / Sequence (5’→3’) / Location in BAC clone
Sukkula / Sukkula-F / AAT GAA CGA AGA AAA GAT AAA GAA / 65,581 - 66,737
Sukkula-R / ATA CTC CGA TGT GAA TAC CAA T
C04-1 / C04-1F / CTC CGG CAC CAT CCA AGT CG / 34,722 - 35,635
C04-1R / AAG GCG GTT TTC CAT TCA TCA
CR2-1 / CR2-1F / AGG ACA TCA ATA CCA TTG TTA CA / 80,473 - 80,777
CR2-1R / CAC TCC TTA TGG CGG CTT CAA A
CR2-2 / CR2-2F / CCT CAA GGG CCA CGA AAT C / 80,961 - 81,169
CR2-2R / TTG CAA TCT GGA TAT TGC GAA T
CR2-3 / CR2-3F / TCG GTG AGA TTT TAC AGT TTT TC / 81,411- 82,434
CR2-3R / GAT AGA GCG ATT GTC AGG GAG AGT
CR2-4 / CR2-4F / CCA CCA CCG GCT GCA TCT AAC G / 82,809- 83,481
CR2-4R / CCT CAA CAA TAC CAC ATC TAA TCA
CR2-5 / CR2-5F / AGG CAT TGG CGC GGA CTA ACT TT / 83,620 - 84,949
CR2-5R / TGT ACT TGA CGC ATA ATC TCC TTC
CR2-6 / CR2-6F / TTA GTG CCG AAA AAG GAT / 85,011 - 85,494
CR2-6R / CAA CAT AGC CAA GAA AAG ATA C
CR2-7 / CR2-7F / CGC ATC CCA AAA CGG TCA CA / 85,552 - 86,440
CR2-7R / GCA ACA AAA CGC TCA ACATCC
CR2-8 / CR2-8F / TCG AAC AAA GAA GGG GAG GGA TAG / 86,561 - 86,955
CR2-8R / TAG TAG TAG AAT GCA ATG AAC GAT
INT / INT-F / TTG ATT TGC GCA GAT TAG GAA / 69,240 – 70,050
INT-R / CGG GAT GTT GAG CGT TTT G
365-1 / 365-1F / ACT CCT TAT GGC GGC TTC AA / 27,062 – 27,384
365-1R / TAT TCG TTC ATA GGT GAT GAG
gag / pBs301-like-F / AAA GAG GCC ATT GAG AAG ATA GAT / 82,716-82,991
pBs301-like-R / ATC TCC GGC AAA ATC ATC CTC CTC
LTR / 733-F / GAC GCA GCA CCT AGA ATA GCC TA / 26,987 - 27,384
365-R1 / TAT TCG TTC ATA GGT GAT GAG
LTRm / LTR-F / TgA TgA ggA CAT (g/C)A(C/A) TAC C / -
LTR-R / TgA TAg Agg C(g/A)A (g/A)gg TgT / -

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