Table S3. List of Avr-Pita alleles used for combined analysis and downloaded from public databases

Accession no. / Strain / Host / Country / Reference / Sequence / Group
DQ855954 / G-223 / Pennisetumtyphoideum / Burkina Faso / Khang et al. 2008 / BF1 / OTH
AB607344 / Br29 / Digitaria horizontalis / Brazil / Chuma et al., 2011 / BR1 / OTH
AB607345 / Br36 / Cenchusechinatus / Brazil / Chuma et al., 2011 / BR2 / OTH
FJ842869 / C12 / O. sativa / Colombia / Dai et al., 2010 / CO1 / OTH
FJ842891 / FC23 / O. sativa / Colombia / Dai et al., 2010 / CO2 / OTH
AB607333 / PO-02-7306 / O. sativa / Indonesia / Chuma et al., 2011 / ID1 / OTH
AB607338 / PO-12-7301-2 / Oryza sativa / Indonesia / Chuma et al., 2011 / ID2 / OTH
AB607339 / PO-02-7306 / O. sativa / Indonesia / Chuma et al., 2011 / ID3 / OTH
DQ855955 / G-78 / Pennisetumpolystachyon / Philippines / Khang et al. 2008 / PH1 / OTH
FJ842890 / RP44 / O. sativa / Philippines / Dai et al., 2010 / PH2 / OTH
FJ842892 / RP9 / O. sativa / Philippines / Dai et al., 2010 / PH3 / OTH
AB607335 / Y93-245c-2 / O. sativa / China / Chuma et al., 2011 / CH1 / CHN
FJ842865 / China20 / O. sativa / China / Dai et al., 2010 / CH2 / CHN
EU055560 / LP4 / O. sativa / China / Ma et al., unpublished (2007) / CH3 / CHN
EU055561 / LP5 / O. sativa / China / Ma et al., unpublished / CH4 / CHN
EU055562 / WJ1 / O. sativa / China / Ma et al., unpublished / CH5 / CHN
EU055563 / WJ7 / O. sativa / China / Ma et al., unpublished / CH6 / CHN
EU055564 / WJ22 / O. sativa / China / Ma et al., unpublished / CH7 / CHN
EU055565 / WJ25 / O. sativa / China / Ma et al., unpublished / CH8 / CHN
EU055566 / WJ32 / O. sativa / China / Ma et al., unpublished / CH9 / CHN
EU055567 / YC21 / O. sativa / China / Ma et al., unpublished / CH10 / CHN
EU055568 / YC26 / O. sativa / China / Ma et al., unpublished / CH11 / CHN
EU055569 / YC35 / O. sativa / China / Ma et al., unpublished / CH12 / CHN
FJ842893 / IN24 / O. sativa / India / Dai et al., 2010 / IN1 / IND
FJ842894 / IN46 / O. sativa / India / Dai et al., 2010 / IN2 / IND
AB607340 / IN77-20-1-1 / Setaria italica / India / Chuma et al., 2011 / IN3 / IND
DQ855956 / G-213 / D. smutsii / Japan / Khang et al. 2008 / JA1 / JAP
AB607334 / 84R-62B / O. sativa / Japan / Chuma et al., 2011 / JA2 / JAP
AB607336 / 84R-62B / O. sativa / Japan / Chuma et al., 2011 / JA3 / JAP
AB607337 / Ken54-04 / O. sativa / Japan / Chuma et al., 2011 / JA4 / JAP
AB607341 / KANSV1-4-1 / Setaria italic / Japan / Chuma et al., 2011 / JA5 / JAP
AB607342 / NNPM1-2-1 / Panicum miliaceum / Japan / Chuma et al., 2011 / JA6 / JAP
AB607343 / Dig41 / D. sanguinalis / Japan / Chuma et al., 2011 / JA7 / JAP
JQ409300 / TS 2.3 / O. sativa / Thailand / Kasetsomboon et al., 2013 / TH1 / THD
JQ409301 / TS 13.2 / O. sativa / Thailand / Kasetsomboon et al., 2013 / TH2 / THD
JQ409302 / TS 16.1 / O. sativa / Thailand / Kasetsomboon et al., 2013 / TH3 / THD
JQ409303 / TS 16.2 / O. sativa / Thailand / Kasetsomboon et al., 2013 / TH4 / THD
JQ409304 / TS 17.2 / O. sativa / Thailand / Kasetsomboon et al., 2013 / TH5 / THD
JQ409305 / TS 19.2 / O. sativa / Thailand / Kasetsomboon et al., 2013 / TH6 / THD
JQ409306 / TS 20.2 / O. sativa / Thailand / Kasetsomboon et al., 2013 / TH7 / THD
JQ409307 / TS 21.2 / O. sativa / Thailand / Kasetsomboon et al., 2013 / TH8 / THD
JQ409308 / TS 22.1 / O. sativa / Thailand / Kasetsomboon et al., 2013 / TH9 / THD
JQ409309 / TS 23.2 / O. sativa / Thailand / Kasetsomboon et al., 2013 / TH10 / THD
JQ409310 / TS 24.1 / O. sativa / Thailand / Kasetsomboon et al., 2013 / TH11 / THD
JQ409311 / TS 25.1 / O. sativa / Thailand / Kasetsomboon et al., 2013 / TH12 / THD
JQ409312 / TS 32.1 / O. sativa / Thailand / Kasetsomboon et al., 2013 / TH13 / THD
JQ409313 / BCC 100 / O. sativa / Thailand / Kasetsomboon et al., 2013 / TH14 / THD
JQ409314 / BCC 301 / O. sativa / Thailand / Kasetsomboon et al., 2013 / TH15 / THD
JQ409315 / BCC 302 / O. sativa / Thailand / Kasetsomboon et al., 2013 / TH16 / THD
JQ409316 / BCC 459 / O. sativa / Thailand / Kasetsomboon et al., 2013 / TH17 / THD
JQ409317 / BCC 551 / O. sativa / Thailand / Kasetsomboon et al., 2013 / TH18 / THD
JQ409318 / BCC 581 / O. sativa / Thailand / Kasetsomboon et al., 2013 / TH19 / THD
JQ409319 / BCC 732 / O. sativa / Thailand / Kasetsomboon et al., 2013 / TH20 / THD
JQ409320 / BCC 760 / O. sativa / Thailand / Kasetsomboon et al., 2013 / TH21 / THD
JQ409321 / BCC 812 / O. sativa / Thailand / Kasetsomboon et al., 2013 / TH22 / THD
JQ409322 / BCC 837 / O. sativa / Thailand / Kasetsomboon et al., 2013 / TH23 / THD
JQ409323 / BCC 941 / O. sativa / Thailand / Kasetsomboon et al., 2013 / TH24 / THD
JQ409324 / BCC 945 / O. sativa / Thailand / Kasetsomboon et al., 2013 / TH25 / THD
JQ409325 / BCC 971 / O. sativa / Thailand / Kasetsomboon et al., 2013 / TH26 / THD
JQ409326 / BCC 985 / O. sativa / Thailand / Kasetsomboon et al., 2013 / TH27 / THD
JQ409327 / BCC 993 / O. sativa / Thailand / Kasetsomboon et al., 2013 / TH28 / THD
JQ409328 / BCC 1108 / O. sativa / Thailand / Kasetsomboon et al., 2013 / TH29 / THD
JQ409329 / BCC 1109 / O. sativa / Thailand / Kasetsomboon et al., 2013 / TH30 / THD
DQ855953 / G-1 / D. sanguinalis / U.S.A / Khang et al. 2008 / US1 / USA
FJ842861 / 91A38 / O. sativa / U.S.A / Dai et al., 2010 / US2 / USA
FJ842862 / 80F1 / O. sativa / U.S.A / Dai et al., 2010 / US3 / USA
FJ842863 / ZN41 / O. sativa / U.S.A / Dai et al., 2010 / US4 / USA
FJ842864 / ZN49 / O. sativa / U.S.A / Dai et al., 2010 / US5 / USA
FJ842866 / PTr24 / O. sativa / U.S.A / Dai et al., 2010 / US6 / USA
FJ842867 / 85M5 / O. sativa / U.S.A / Dai et al., 2010 / US7 / USA
FJ842868 / 49D / O. sativa / U.S.A / Dai et al., 2010 / US8 / USA
FJ842870 / ZN39 / O. sativa / U.S.A / Dai et al., 2010 / US9 / USA
FJ842871 / 92M3 / O. sativa / U.S.A / Dai et al., 2010 / US10 / USA
FJ842872 / ZN11 / O. sativa / U.S.A / Dai et al., 2010 / US11 / USA
FJ842873 / 91T59 / O. sativa / U.S.A / Dai et al., 2010 / US12 / USA
FJ842874 / 75A19 / O. sativa / U.S.A / Dai et al., 2010 / US13 / USA
FJ842875 / A119 / O. sativa / U.S.A / Dai et al., 2010 / US14 / USA
FJ842876 / ZN27 / O. sativa / U.S.A / Dai et al., 2010 / US15 / USA
FJ842877 / SEF6 / O. sativa / U.S.A / Dai et al., 2010 / US16 / USA
FJ842878 / CG3 / Crabgrass / U.S.A / Dai et al., 2010 / US17 / USA
FJ842879 / X25 / Crabgrass / U.S.A / Dai et al., 2010 / US18 / USA
FJ842880 / X54 / Crabgrass / U.S.A / Dai et al., 2010 / US19 / USA
FJ842881 / ZN04 / O. sativa / U.S.A / Dai et al., 2010 / US20 / USA
FJ842882 / 91A55 / O. sativa / U.S.A / Dai et al., 2010 / US21 / USA
FJ842883 / 93A17 / O. sativa / U.S.A / Dai et al., 2010 / US22 / USA
FJ842884 / 92A8 / O. sativa / U.S.A / Dai et al., 2010 / US23 / USA
FJ842885 / 81F3 / O. sativa / U.S.A / Dai et al., 2010 / US24 / USA
FJ842886 / SEF9 / O. sativa / U.S.A / Dai et al., 2010 / US25 / USA
FJ842887 / ZN25 / O. sativa / U.S.A / Dai et al., 2010 / US26 / USA
FJ842888 / 93L6 / O. sativa / U.S.A / Dai et al., 2010 / US27 / USA
FJ842889 / ZN62 / O. sativa / U.S.A / Dai et al., 2010 / US28 / USA
FJ842895 / SEF10 / O. sativa / U.S.A / Dai et al., 2010 / US29 / USA
FJ842896 / SEF11 / O. sativa / U.S.A / Dai et al., 2010 / US30 / USA
FJ842897 / 93L29 / O. sativa / U.S.A / Dai et al., 2010 / US31 / USA
FJ842898 / PTr25 / O. sativa / U.S.A / Dai et al., 2010 / US32 / USA