Table S1DNA microarray datasets from TAIR used for global expression profiling in the different tissues of A.thaliana (Columbia) under control growth conditions

Tissue / TAIR Submission Number / Age of plant (days) / Experiments / Number of control datasets used
Root
(Data from 6 independent labs) / ME00325 / 18 / Cold stress / 6
ME00326 / 18 / Genotoxic stress / 6
ME00340 / 18 / Oxidative stress / 6
ME00330 / 18 / Wounding stress / 6
ME00329 / 18 / UV-B stress / 6
ME00339 / 18 / Heat stress / 6
Shoot
(Data from 7 independent labs: of which 6 labs were those from where data for root was also downloaded) / ME00321 / 18 / Response to cold soil plants / 2
ME00325 / 18 / Cold stress / 6
ME00326 / 18 / Genotoxic stress / 6
ME00340 / 18 / Oxidative stress / 6
ME00330 / 18 / Wounding stress / 6
ME00329 / 18 / UV-B stress / 6
ME00339 / 18 / Heat stress / 6
Rosette leaf
(Data from 5 independent labs) / ME00353 / 28 / Pseudomonas half leaf infection / 6
ME00341 / 28 / Response to Botrytis cinerea / 6
ME00354 / 28 / Response to Erysiphe orontii infection / 6
ME00331 / 35 / Response to virulent, avirulent, type-III secretion system deficient non host bacterium / 4
ME00315 / 14 / Responses to overexpression of wild type and constitutively active Arabidopsis MAP Kinase Kinase 2 / 1
Whole plant
(Data from 3 independent labs) / ME00333 / 7 / ABA time course in cold seeds / 3
ME00356 / 21 / Cytokinin treatment / 2
ME00378 / 14 / Herbicidal 2-4D application / 1
Stem / ME00318 / Unavailable / Tissue type array of columbia-0-ecotype / 3
Flower / ME00318 / 29 / Tissue type array of columbia-0-ecotype / 4
Total number of datasets used for analysis / 110