Table S1. Identification of Putative Conserved Syntenies Between the Common Carp and Zebrafish
Table S1. Identification of putative conserved syntenies between the common carp and zebrafish genomes.
Locus / Chromosome / Chromosome location (bp) / Sequence similarity / Score / Linkage group / Map location (cM)HLJ340 / 1 / 47,574,829 / 88.8 / 382 / LG21 / 0.0
HLJ1563 / 1 / 48,343,259 / 90.9 / 73 / LG21 / 15.5
HLJ536 / 1 / 655,118 / 87.4 / 90 / LG21 / 20.7
SNP1452 / 1 / 55,683,692 / 90.6 / 43 / LG21 / 23.3
SNP0760 / 1 / 55,683,473 / 85.9 / 46 / LG21 / 23.3
HLJE314 / 1 / 14,347,870 / 92.2 / 184 / LG21 / 32.0
HLJ1290 / 1 / 9,192,778 / 90.7 / 174 / LG21 / 41.8
HLJE509 / 1 / 21,643,631 / 91.5 / 427 / LG21 / 46.2
HLJ499 / 1 / 6,121,973 / 87.1 / 86 / LG21 / 53.8
SNP0738 / 1 / 22,047,889 / 89.8 / 86 / LG21 / 55.5
HLJ1438 / 1 / 59,775,374 / 81.4 / 101 / LG3 / 0.0
SNP0382 / 1 / 56,608,653 / 96.6 / 27 / LG3 / 1.9
SNP0451 / 1 / 59,523,909 / 84.8 / 46 / LG3 / 4.2
SNP0307 / 1 / 22,044,435 / 93.5 / 81 / LG3 / 16.0
SNP0343 / 1 / 22,045,798 / 95.8 / 87 / LG3 / 16.0
HLJ335 / 1 / 16,116,176 / 88.6 / 101 / LG3 / 16.0
SNP1358 / 1 / 28,008,584 / 94.2 / 107 / LG3 / 16.0
SNP0330 / 1 / 22,045,826 / 95.5 / 60 / LG3 / 16.0
HLJ2339 / 1 / 47,743,939 / 93.0 / 335 / LG3 / 20.9
SNP0188 / 1 / 52,223,650 / 92.5 / 34 / LG3 / 22.5
SNP1433 / 1 / 4,303,432 / 88.9 / 70 / LG6 / 0.0
HLJ1307 / 2 / 264,791 / 80.8 / 45 / LG12 / 0.0
HLJ419 / 2 / 1,005,585 / 85.4 / 41 / LG12 / 1.7
HLJ035 / 2 / 1,928,179 / 87.0 / 148 / LG12 / 17.1
HLJ030 / 2 / 1,928,179 / 87.0 / 148 / LG12 / 18.2
HLJ2560 / 2 / 1,828,920 / 100.0 / 41 / LG12 / 19.9
SNP0533 / 2 / 5,104,858 / 88.4 / 93 / LG12 / 24.1
SNP0530 / 2 / 19,460,581 / 93.3 / 103 / LG12 / 25.2
SNP1198 / 2 / 3,996,758 / 95.2 / 76 / LG12 / 26.9
SNP1481 / 2 / 24,253,752 / 94.3 / 31 / LG12 / 31.8
HLJ301 / 2 / 28,810,140 / 89.0 / 270 / LG12 / 37.7
SNP0302 / 2 / 27,543,267 / 86.3 / 85 / LG14 / 0.0
HLJ617 / 2 / 26,048,865 / 89.8 / 103 / LG14 / 0.6
SNP1480 / 2 / 26,623,421 / 94.8 / 69 / LG14 / 1.7
SNP0144 / 2 / 5,672,166 / 95.2 / 55 / LG14 / 6.8
SNP0031 / 2 / 5,676,492 / 94.8 / 69 / LG14 / 6.8
HLJ2532 / 2 / 54,861,648 / 92.7 / 92 / LG14 / 18.0
HLJ2305 / 2 / 55,206,332 / 92.3 / 77 / LG14 / 18.6
SNP0995 / 2 / 56,967,003 / 93.5 / 94 / LG14 / 27.8
HLJ2205 / 2 / 44,717,322 / 92.3 / 208 / LG14 / 29.0
SNP0225 / 2 / 59,491,139 / 87.9 / 51 / LG14 / 44.1
HLJE740 / 2 / 55,849,393 / 89.7 / 324 / LG15 / 6.7
SNP1020 / 2 / 56,966,900 / 91.2 / 84 / LG15 / 7.6
SNP1148 / 2 / 56,962,084 / 91.4 / 96 / LG15 / 7.6
SNP0014 / 2 / 56,953,049 / 95.8 / 110 / LG15 / 9.0
HLJ1190 / 3 / 1,926,687 / 90.6 / 111 / LG31 / 0.0
HLJE9 / 3 / 6,945,635 / 94.4 / 363 / LG31 / 17.8
HLJ870 / 3 / 406,846 / 90.4 / 152 / LG31 / 39.4
SNP0770 / 3 / 39,568,377 / 94.2 / 107 / LG33 / 0.0
HLJ549 / 3 / 35,226,725 / 86.2 / 215 / LG33 / 7.2
SNP0715 / 3 / 32,237,391 / 93.7 / 83 / LG33 / 18.4
SNP0146 / 3 / 32,237,391 / 92.9 / 60 / LG33 / 18.8
SNP0335 / 3 / 20,879,668 / 94.6 / 66 / LG33 / 29.7
SNP0895 / 3 / 17,918,066 / 100.0 / 20 / LG33 / 40.1
SNP0786 / 3 / 61,787,848 / 96.7 / 86 / LG33 / 42.0
SNP0423 / 4 / 15,900,197 / 89.6 / 91 / LG11 / 23.5
SNP0304 / 4 / 22,681,886 / 87.8 / 55 / LG13 / 0.0
SNP0603 / 4 / 24,289,702 / 83.3 / 76 / LG13 / 0.0
SNP1274 / 4 / 24,294,802 / 86.7 / 77 / LG13 / 0.0
HLJ2474 / 4 / 4,341,153 / 93.3 / 129 / LG13 / 28.9
SNP0604 / 4 / 24,286,655 / 88.4 / 86 / LG13 / 37.2
SNP0331 / 4 / 24,279,799 / 93.7 / 55 / LG13 / 37.2
SNP0123 / 4 / 16,783,140 / 88.6 / 61 / LG13 / 39.9
SNP1397 / 4 / 24,267,042 / 91.7 / 91 / LG13 / 39.9
SNP1116 / 4 / 24,265,618 / 87.5 / 72 / LG13 / 39.9
SNP1370 / 4 / 16,776,470 / 87.9 / 75 / LG13 / 39.9
SNP1017 / 4 / 16,783,140 / 97.9 / 46 / LG13 / 39.9
HLJ2544 / 4 / 9,685,728 / 88.5 / 215 / LG13 / 43.8
SNP1272 / 4 / 24,293,118 / 88.0 / 57 / LG13 / 53.2
HLJ526 / 4 / 99,564 / 88.9 / 105 / LG13 / 66.3
HLJ2545 / 4 / 1,852,737 / 90.8 / 170 / LG18 / 17.2
HLJ2235 / 4 / 2,434,116 / 91.0 / 109 / LG18 / 20.6
HLJ1211 / 4 / 13,677,723 / 91.0 / 217 / LG18 / 37.5
HLJ2401 / 4 / 16,055,268 / 89.7 / 236 / LG18 / 41.9
HLJ2364 / 4 / 16,079,896 / 82.9 / 159 / LG18 / 51.7
SNP1191 / 5 / 46,424,954 / 85.4 / 58 / LG1 / 0.0
SNP0048 / 5 / 46,428,814 / 92.3 / 77 / LG1 / 0.0
SNP1227 / 5 / 17,719,102 / 90.9 / 63 / LG1 / 11.1
SNP0854 / 5 / 17,719,102 / 91.1 / 65 / LG1 / 11.1
SNP0140 / 5 / 72,068,892 / 91.7 / 100 / LG1 / 14.0
SNP1525 / 5 / 32,340,746 / 97.9 / 89 / LG1 / 16.2
SNP1530 / 5 / 32,340,746 / 95.1 / 92 / LG1 / 16.2
SNP0476 / 5 / 24,298,020 / 92.7 / 70 / LG1 / 17.0
HLJ346 / 5 / 59,136,612 / 90.7 / 232 / LG1 / 19.4
SNP0477 / 5 / 24,294,584 / 95.9 / 90 / LG1 / 45.4
SNP1064 / 5 / 30,469,472 / 85.1 / 85 / LG1 / 46.5
SNP0181 / 5 / 39,439,208 / 94.3 / 62 / LG1 / 49.9
SNP0883 / 5 / 39,439,208 / 94.4 / 63 / LG1 / 49.9
HLJ2236 / 6 / 3,747,659 / 96.9 / 146 / LG17 / 51.9
HLJ2576 / 6 / 6,348,499 / 84.6 / 185 / LG17 / 53.4
SNP1466 / 6 / 6,148,514 / 83.5 / 68 / LG17 / 54.3
SNP1521 / 6 / 10,741,875 / 93.2 / 64 / LG17 / 57.4
SNP0096 / 6 / 10,741,875 / 93.2 / 64 / LG17 / 57.4
HLJ2194 / 6 / 26,737,468 / 89.5 / 189 / LG17 / 62.3
HLJ2491 / 6 / 12,811,343 / 88.9 / 49 / LG17 / 62.3
HLJ2182 / 6 / 16,053,676 / 95.7 / 128 / LG17 / 63.5
SNP0495 / 6 / 41,035,897 / 91.6 / 89 / LG17 / 71.1
SNP1211 / 6 / 53,332,732 / 91.1 / 65 / LG17 / 72.8
SNP0609 / 6 / 53,332,732 / 91.0 / 63 / LG17 / 72.8
HLJE418 / 6 / 49,099,260 / 87.4 / 141 / LG17 / 75.7
HLJ2587 / 6 / 57,536,582 / 89.8 / 141 / LG17 / 88.7
HLJ428 / 6 / 58,694,818 / 92.0 / 104 / LG17 / 102.7
SNP1367 / 6 / 15,552,315 / 95.8 / 65 / LG17 / 119.0
SNP0855 / 6 / 9,927,027 / 88.3 / 65 / LG17 / 125.8
SNP1209 / 6 / 9,927,027 / 87.2 / 67 / LG17 / 126.1
SNP0829 / 6 / 7,632,642 / 91.4 / 92 / LG17 / 127.6
SNP0726 / 6 / 7,630,916 / 95.0 / 108 / LG17 / 127.6
SNP0830 / 6 / 7,632,642 / 94.3 / 93 / LG17 / 127.6
SNP0098 / 6 / 9,927,027 / 87.2 / 67 / LG17 / 130.1
SNP0162 / 6 / 55,005,618 / 84.6 / 35 / LG20 / 0.0
SNP0244 / 6 / 460,718 / 98.0 / 47 / LG20 / 2.0
HLJ2494 / 6 / 44,066,228 / 90.5 / 110 / LG20 / 11.0
SNP0184 / 6 / 34,822,908 / 91.3 / 85 / LG20 / 16.1
SNP0183 / 6 / 34,891,234 / 91.5 / 88 / LG20 / 16.1
SNP0003 / 6 / 28,810,457 / 98.6 / 72 / LG20 / 23.3
SNP1156 / 6 / 49,456,750 / 93.2 / 89 / LG20 / 24.8
HLJ571 / 6 / 5,211,670 / 85.1 / 129 / LG20 / 43.3
SNP0132 / 6 / 3,329,748 / 84.0 / 55 / LG20 / 46.0
HLJ1140 / 6 / 9,881,034 / 91.5 / 216 / LG20 / 56.4
HLJ2394 / 6 / 3,347,626 / 90.4 / 132 / LG20 / 72.6
SNP0077 / 7 / 36,532,360 / 94.8 / 86 / LG16 / 0.0
SNP0898 / 7 / 36,524,258 / 88.6 / 68 / LG16 / 1.5
HLJ407 / 7 / 7,915,698 / 95.7 / 125 / LG16 / 24.2
HLJ534 / 7 / 22,958,209 / 84.5 / 235 / LG28 / 0.0
HLJ1316 / 7 / 17,675,814 / 95.4 / 234 / LG28 / 16.6
SNP0922 / 7 / 31,291,790 / 99.1 / 109 / LG28 / 19.8
HLJ596 / 7 / 52,472,304 / 88.1 / 184 / LG28 / 41.9
HLJ2471 / 7 / 63,051,370 / 89.0 / 131 / LG44 / 0.0
SNP0001 / 7 / 69,525,550 / 90.7 / 88 / LG44 / 4.3
SNP0045 / 8 / 2,783,655 / 94.6 / 50 / LG22 / 0.0
SNP0280 / 8 / 19,803,057 / 93.2 / 76 / LG22 / 21.2
HLJ315 / 8 / 19,704,990 / 86.7 / 252 / LG22 / 21.8
SNP0030 / 8 / 21,907,085 / 89.9 / 70 / LG22 / 24.2
HLJE387 / 8 / 22,064,963 / 89.2 / 407 / LG22 / 25.4
SNP1065 / 8 / 24,592,911 / 92.8 / 94 / LG22 / 27.5
SNP0547 / 8 / 26,150,051 / 94.0 / 101 / LG22 / 29.0
SNP1010 / 8 / 29,302,794 / 92.3 / 76 / LG22 / 32.1
HLJE385 / 8 / 34,780,745 / 91.1 / 498 / LG22 / 41.4
SNP0416 / 8 / 41,684,370 / 96.6 / 27 / LG22 / 67.2
HLJ1139 / 8 / 34,623,009 / 90.3 / 225 / LG49 / 0.0
SNP1216 / 8 / 32,285,153 / 97.6 / 78 / LG49 / 1.4
SNP1141 / 9 / 16,479,131 / 85.2 / 57 / LG40 / 4.3
SNP0135 / 9 / 16,480,040 / 92.3 / 88 / LG40 / 4.3
SNP0109 / 9 / 49,759,406 / 81.4 / 64 / LG50 / 0.0
SNP0762 / 9 / 40,057,456 / 80.4 / 45 / LG50 / 2.8
HLJ1314 / 10 / 34,149,618 / 90.0 / 191 / LG48 / 0.0
SNP1371 / 10 / 8,614,363 / 87.9 / 25 / LG48 / 20.1
HLJ119 / 11 / 45,134,550 / 81.6 / 110 / LG32 / 0.0
SNP0705 / 11 / 43,636,609 / 94.2 / 107 / LG32 / 10.2
HLJ2463 / 11 / 45,616,693 / 90.7 / 298 / LG32 / 11.9
SNP1431 / 11 / 6,539,911 / 92.9 / 84 / LG32 / 17.9
SNP0329 / 11 / 6,538,835 / 92.4 / 66 / LG32 / 17.9
SNP0238 / 11 / 5,899,930 / 92.7 / 94 / LG32 / 18.6
HLJ456 / 11 / 25,726,125 / 93.4 / 106 / LG32 / 42.3
HLJ380 / 11 / 25,726,125 / 93.9 / 116 / LG32 / 84.7
HLJ439 / 11 / 43,063,599 / 87.5 / 156 / LG5 / 66.1
SNP1185 / 11 / 212,510 / 88.4 / 58 / LG5 / 73.1
HLJE623 / 12 / 18,591,388 / 98.9 / 87 / LG2 / 17.8
HLJ429 / 12 / 1,265,767 / 100.0 / 66 / LG41 / 0.0
HLJ339 / 12 / 1,719,208 / 93.2 / 61 / LG41 / 28.6
HLJ472 / 13 / 42,028,216 / 88.9 / 125 / LG2 / 0.0
SNP1035 / 13 / 33,257,001 / 85.6 / 64 / LG2 / 14.4
HLJ360 / 13 / 34,252,764 / 90.3 / 227 / LG30 / 0.0
SNP1486 / 13 / 40,692,003 / 93.2 / 64 / LG30 / 26.3
SNP0159 / 13 / 18,678,277 / 86.5 / 34 / LG30 / 31.5
SNP0846 / 13 / 18,685,922 / 83.3 / 58 / LG30 / 35.3
SNP0346 / 13 / 18,685,922 / 83.3 / 58 / LG30 / 35.3
SNP1495 / 13 / 4,334,296 / 97.1 / 33 / LG30 / 65.4
SNP0858 / 14 / 37,907,828 / 92.8 / 71 / LG13 / 9.2
SNP0675 / 14 / 26,606,193 / 89.7 / 85 / LG36 / 2.2
SNP1164 / 14 / 33,739,640 / 95.0 / 109 / LG36 / 6.8
SNP0935 / 14 / 33,739,664 / 93.8 / 85 / LG36 / 23.7
HLJ2231 / 14 / 579,936 / 85.3 / 84 / LG4 / 0.0
HLJ2241 / 14 / 34,069,131 / 85.4 / 254 / LG4 / 31.1
HLJ2362 / 14 / 37,208,157 / 94.0 / 88 / LG4 / 36.7
HLJ659 / 14 / 48,108,063 / 86.8 / 106 / LG4 / 49.8
SNP0222 / 14 / 49,151,875 / 91.7 / 50 / LG4 / 51.0
SNP0647 / 14 / 49,102,100 / 93.2 / 89 / LG4 / 51.0
SNP1261 / 14 / 6,918,058 / 94.6 / 66 / LG4 / 61.7
SNP1263 / 14 / 6,913,455 / 88.3 / 85 / LG4 / 61.7
SNP0731 / 14 / 48,570,086 / 93.0 / 98 / LG4 / 70.3
HLJ1285 / 14 / 8,890,163 / 93.9 / 85 / LG42 / 0.0
SNP1390 / 14 / 14,453,282 / 87.4 / 71 / LG42 / 30.7
SNP1221 / 15 / 20,837,843 / 85.5 / 83 / LG47 / 0.0
SNP1190 / 15 / 20,837,498 / 88.8 / 90 / LG47 / 0.0
SNP0470 / 15 / 24,843,871 / 87.9 / 69 / LG47 / 6.3
HLJ726 / 15 / 35,897,665 / 93.1 / 250 / LG47 / 25.8
HLJ1207 / 15 / 42,033,507 / 85.7 / 50 / LG47 / 35.9
HLJ2541 / 15 / 46,614,758 / 91.4 / 117 / LG47 / 38.9
HLJ2447 / 15 / 45,099,795 / 86.2 / 116 / LG5 / 13.0
HLJ2333 / 15 / 35,592,916 / 87.5 / 91 / LG5 / 27.0
SNP0157 / 15 / 20,148,134 / 84.6 / 80 / LG5 / 56.6
HLJ328 / 15 / 13,356,114 / 88.1 / 232 / LG5 / 87.2
HLJE15 / 16 / 3,669,589 / 88.4 / 290 / LG3 / 16.3
HLJ2310 / 16 / 15,273,807 / 87.2 / 157 / LG37 / 0.0
SNP0165 / 16 / 26,201,956 / 86.8 / 89 / LG37 / 1.9
SNP0167 / 16 / 26,201,222 / 89.4 / 82 / LG37 / 1.9
SNP0919 / 16 / 19,256,665 / 91.2 / 75 / LG37 / 5.0
HLJ348 / 16 / 788,775 / 86.9 / 107 / LG37 / 14.4
HLJE518 / 16 / 27,833,398 / 91.7 / 499 / LG8 / 29.0
SNP0126 / 16 / 28,253,544 / 90.1 / 88 / LG8 / 37.7
HLJ385 / 16 / 34,580,672 / 91.3 / 314 / LG8 / 50.0
SNP0729 / 16 / 44,949,315 / 88.3 / 59 / LG8 / 59.4
SNP0438 / 17 / 24,445,929 / 81.9 / 67 / LG39 / 0.0
HLJ392 / 17 / 23,402,631 / 91.6 / 168 / LG39 / 0.0
HLJ476 / 17 / 27,534,229 / 87.1 / 310 / LG39 / 0.0
HLJE398 / 17 / 53,976,545 / 86.8 / 333 / LG39 / 36.8
HLJ688 / 17 / 53,720,472 / 92.2 / 129 / LG45 / 0.0
HLJ541 / 17 / 577,689 / 82.8 / 103 / LG46 / 0.0
SNP0881 / 17 / 758,953 / 93.1 / 87 / LG46 / 4.3
HLJ765 / 17 / 8,475,879 / 89.9 / 274 / LG9 / 0.0
HLJ1115 / 17 / 26,518,766 / 93.6 / 41 / LG9 / 3.0
HLJ2397 / 17 / 15,467,766 / 84.8 / 223 / LG9 / 9.5
SNP0657 / 17 / 15,276,856 / 92.1 / 75 / LG9 / 9.8
HLJ938 / 17 / 22,246,619 / 83.1 / 113 / LG9 / 10.6
HLJ673 / 17 / 21,452,470 / 82.8 / 131 / LG9 / 11.3
HLJ529 / 17 / 24,059,545 / 80.4 / 172 / LG9 / 22.9
SNP0286 / 18 / 7,785,059 / 88.4 / 53 / LG34 / 5.1
SNP1201 / 18 / 7,785,329 / 97.3 / 71 / LG34 / 5.1
HLJ853 / 18 / 9,701,823 / 86.3 / 227 / LG34 / 8.2
SNP0240 / 18 / 17,278,404 / 88.5 / 60 / LG34 / 12.1
HLJ393 / 18 / 19,547,771 / 92.3 / 222 / LG34 / 15.3
HLJ2300 / 18 / 35,643,770 / 91.4 / 291 / LG38 / 0.0
HLJ342 / 19 / 40,356,598 / 92.3 / 109 / LG19 / 45.9
SNP0044 / 19 / 42,373,965 / 95.7 / 42 / LG19 / 49.1
SNP0041 / 19 / 42,373,844 / 93.8 / 28 / LG19 / 49.1
HLJ2382 / 19 / 45,042,033 / 88.9 / 71 / LG19 / 55.4
SNP0375 / 19 / 45,290,399 / 93.4 / 105 / LG19 / 57.0
HLJ2347 / 19 / 8,425,892 / 86.7 / 142 / LG19 / 70.0
SNP0475 / 19 / 2,128,426 / 81.8 / 77 / LG19 / 73.5
HLJ357 / 19 / 868,115 / 90.0 / 136 / LG19 / 84.4
SNP0663 / 19 / 35,739,866 / 80.0 / 33 / LG19 / 87.6
HLJ055 / 19 / 9,495,483 / 87.8 / 327 / LG19 / 92.4
SNP0124 / 19 / 9,907,442 / 91.3 / 58 / LG19 / 102.5
SNP1120 / 19 / 1,978,565 / 90.1 / 73 / LG19 / 110.6
SNP1077 / 19 / 22,299,487 / 95.2 / 94 / LG23 / 14.1
SNP1079 / 19 / 22,299,449 / 88.9 / 63 / LG23 / 14.1
HLJ229 / 19 / 20,314,386 / 92.7 / 198 / LG23 / 15.5
HLJ2353 / 19 / 17,306,840 / 83.2 / 126 / LG43 / 0.0
HLJ390 / 19 / 15,510,607 / 85.5 / 106 / LG43 / 1.4
SNP0400 / 20 / 51,537,407 / 94.7 / 85 / LG29 / 0.0
SNP0401 / 20 / 51,537,210 / 92.5 / 57 / LG29 / 0.0
SNP1242 / 20 / 42,720,262 / 88.3 / 40 / LG29 / 7.7
SNP1093 / 20 / 42,730,273 / 98.2 / 53 / LG29 / 7.7
SNP1491 / 20 / 10,733,581 / 98.0 / 94 / LG35 / 0.0
HLJ845 / 20 / 8,520,901 / 95.6 / 124 / LG35 / 2.4
SNP0653 / 20 / 40,786,174 / 86.8 / 89 / LG35 / 6.9
SNP0652 / 20 / 40,786,408 / 90.7 / 88 / LG35 / 6.9
HLJ2503 / 20 / 32,031,866 / 88.7 / 108 / LG35 / 12.8
HLJ2309 / 21 / 3,755,288 / 89.6 / 160 / LG10 / 0.0
HLJ922 / 21 / 3,305,235 / 87.3 / 193 / LG10 / 0.0
HLJ517 / 21 / 28,063,287 / 81.8 / 185 / LG10 / 1.1
HLJ352 / 21 / 4,012,323 / 88.6 / 100 / LG10 / 6.5
HLJ2467 / 21 / 3,004,447 / 93.9 / 72 / LG7 / 12.5
SNP1055 / 21 / 288,376 / 95.8 / 88 / LG7 / 19.1
SNP1058 / 21 / 289,733 / 92.9 / 83 / LG7 / 19.1
HLJ840 / 21 / 1,109,758 / 96.4 / 104 / LG7 / 31.4
HLJ643 / 21 / 3,357,937 / 87.8 / 78 / LG7 / 40.1
HLJ2591 / 21 / 4,940,868 / 91.6 / 276 / LG7 / 45.5
SNP1359 / 21 / 9,812,324 / 88.7 / 55 / LG7 / 51.8
SNP1302 / 22 / 1,225,822 / 89.4 / 52 / LG27 / 0.0
SNP1218 / 22 / 11,245,787 / 88.1 / 51 / LG27 / 11.7
SNP0086 / 22 / 15,772,368 / 95.7 / 43 / LG27 / 15.5
SNP0282 / 22 / 15,773,571 / 95.4 / 58 / LG27 / 16.3
HLJ1132 / 22 / 20,234,272 / 86.6 / 146 / LG27 / 18.9
HLJ468 / 22 / 22,019,549 / 89.7 / 190 / LG27 / 19.2
SNP0322 / 22 / 23,251,694 / 93.8 / 42 / LG27 / 21.9
HLJ2496 / 22 / 17,235,806 / 85.1 / 156 / LG27 / 25.4
HLJ1331 / 22 / 34,757,260 / 87.1 / 270 / LG27 / 29.0
SNP0029 / 22 / 7,481,630 / 91.5 / 63 / LG6 / 7.6
SNP0633 / 22 / 7,513,998 / 90.0 / 40 / LG6 / 7.6
SNP0417 / 22 / 7,507,655 / 94.0 / 43 / LG6 / 7.6
SNP0340 / 22 / 7,481,636 / 90.8 / 57 / LG6 / 7.6
HLJ1121 / 22 / 2,181,312 / 90.3 / 85 / LG6 / 18.5
HLJ2387 / 22 / 714,299 / 89.1 / 120 / LG6 / 19.5
SNP1418 / 22 / 10,512,905 / 94.0 / 88 / LG6 / 24.9
HLJ2171 / 22 / 29,322,112 / 87.7 / 42 / LG6 / 60.6
HLJ2386 / 23 / 44,617,230 / 93.7 / 69 / LG17 / 0.0
HLJE747 / 23 / 2,565,933 / 92.8 / 364 / LG17 / 11.7
HLJ2295 / 23 / 4,102,744 / 93.3 / 78 / LG17 / 12.6
SNP0686 / 23 / 10,456,849 / 97.6 / 40 / LG17 / 36.4
HLJ2366 / 23 / 45,483,302 / 92.7 / 221 / LG28 / 85.8
SNP1129 / 24 / 17,578,134 / 95.3 / 96 / LG24 / 0.0
SNP0174 / 24 / 41,580,205 / 84.3 / 83 / LG24 / 4.4
SNP0189 / 24 / 12,825,453 / 93.3 / 91 / LG25 / 13.8
SNP0875 / 24 / 3,106,106 / 84.5 / 41 / LG25 / 16.6
SNP0092 / 24 / 3,106,082 / 89.1 / 55 / LG25 / 16.6
SNP0094 / 24 / 27,271,897 / 98.3 / 56 / LG25 / 23.2
HLJ1336 / 24 / 29,234,806 / 89.0 / 149 / LG25 / 27.6
SNP0112 / 24 / 39,081,037 / 94.9 / 88 / LG25 / 60.6
HLJ519 / 24 / 40,439,764 / 94.2 / 231 / LG25 / 65.2
SNP1171 / 25 / 18,947,749 / 93.0 / 98 / LG11 / 0.0
HLJ1410 / 25 / 4,459,884 / 88.0 / 153 / LG11 / 11.7
HLJ1423 / 25 / 4,459,884 / 86.5 / 158 / LG11 / 26.4
HLJ1343 / 25 / 4,459,884 / 88.0 / 153 / LG11 / 27.1
HLJ1342 / 25 / 4,459,884 / 89.0 / 141 / LG11 / 27.1
HLJ1394 / 25 / 4,459,888 / 84.9 / 135 / LG11 / 27.1
HLJ2274 / 25 / 7,850,192 / 91.0 / 229 / LG11 / 35.6
SNP0628 / 25 / 7,807,345 / 95.5 / 40 / LG11 / 36.8
SNP1177 / 25 / 7,809,160 / 82.1 / 50 / LG11 / 36.8
SNP1094 / 25 / 16,956,458 / 95.1 / 37 / LG11 / 38.2
SNP0757 / 25 / 30,179,717 / 92.3 / 59 / LG11 / 38.2
HLJ1117 / 25 / 23,453,804 / 89.9 / 205 / LG11 / 41.1
SNP1138 / 25 / 17,760,202 / 89.0 / 78 / LG26 / 0.0
HLJ1145 / 25 / 15,227,575 / 94.9 / 210 / LG26 / 4.1
SNP0594 / 25 / 16,952,527 / 94.6 / 50 / LG26 / 5.4
SNP0623 / 25 / 33,283,660 / 93.1 / 75 / LG26 / 15.7
SNP1461 / 25 / 27,754,612 / 91.7 / 70 / LG26 / 15.8
SNP0333 / 25 / 27,754,612 / 91.7 / 70 / LG26 / 15.8
HLJ2371 / Zv9_NA409 / 23,987 / 89.1 / 152 / LG35 / 45.1
HLJ2345 / Zv9_NA472 / 2,258 / 80.7 / 54 / LG23 / 3.1
HLJ909 / Zv9_NA529 / 9,803 / 89.4 / 81 / LG2 / 25.6
SNP0490 / Zv9_NA904 / 5,841 / 90.5 / 77 / LG5 / 56.2
HLJE415 / Zv9_scaffold3455 / 223,494 / 92.8 / 286 / LG5 / 21.1
HLJ378 / Zv9_scaffold3471 / 177,361 / 84.7 / 144 / LG20 / 32.7
HLJ2465 / Zv9_scaffold3491 / 165,556 / 94.1 / 59 / LG7 / 50.3
HLJE13 / Zv9_scaffold3518 / 457,720 / 87.5 / 244 / LG13 / 62.0
HLJ2229 / Zv9_scaffold3527 / 5,733 / 81.6 / 140 / LG26 / 12.6
HLJ821 / Zv9_scaffold3545 / 173,016 / 97.3 / 68 / LG6 / 30.6
Marker loci are named with prefix HLJ and HLJE for microsatellites, and SNP for single nucleotidepolymorphism. ID is the GenBank identifier for the markers (accession numbers).Sequence similarityand score columns describe the most significant similarities between the common carp sequences and the zebrafishsequences.