Table 2. Pairwise comparison of genome sequences, ORFsand proteins among the Czech isolates and between the Czech and other PLRV isolates available in GenBanka

Genome / Isolate / Zim13 / OP / Noir / Fr1 / CIP01 / Cu87 / 14.2 / E / S / A / C / P / N / Meanb / 1/045 / 1/046 / 1/047
complete / 1/045
1/046
1/047 / 97.8
98.4
98.1 / 97.8
98.4
98.1 / 97.6
98.1
97.4 / 97.7
98.3
98.0 / 98.3
97.8
97.4 / 97.9
98.4
98.1 / 97.8
98.5
98.1 / 98.3
98.9
98.7 / 98.0
98.6
98.3 / 93.1
93.4
93.3 / 97.4
98.0
97.7 / 98.3
98.9
98.3 / 97.8
98.4
97.7 / -
-
- / -
98.5
98.0 / 98.5
-
98.7 / 98.0
98.7
-
ORF/Pc / Isolate / Zim13 / OP / Noir / Fr1 / CIP01 / Cu87 / 14.2 / E / S / A / C / P / N / Meanb / 1/045 / 1/046 / 1/047
ORF0/P0 / 1/045
1/046
1/047 / 94.6/93.5
99.1/99.6
98.0/98.0 / 94.6/93.9
99.6/99.6
98.9/98.8 / 94.4/92.7
98.8/98.4
98.5/97.6 / 94.6/93.5
98.8/99.6
97.7/98.0 / 99.1/99.6
94.4/93.9
93.8/92.7 / 94.5/92.3
98.7/98.0
98.1/97.2 / 94.1/93.1
98.8/99.2
98.0/97.6 / 94.5/93.9
99.7/100
98.4/98.4 / 94.2/93.1
98.9/99.2
97.8/97.6 / 93.5/91.9
96.8/96.8
96.4/95.5 / 93.3/90.7
98.1/96.4
97.2/95.5 / 94.5/93.9
99.7/100
98.4/98.4 / 94.8/93.1
98.9/99.2
98.4/97.6 / 94.7/93.5
98.5/98.5
97.7/97.1 / -
94.5/93.9
94.2/92.7 / 94.5/93.9
-
98.5/98.4 / 94.2/92.7
98.5/98.4
-
ORF1/P1 / 1/045
1/046
1/047 / 97.3/95.9
98.4/97.5
98.1/97.2 / 97.2/95.0
98.5/97.2
98.5/97.3 / 96.0/94.7
97.0/96.2
97.1/96.6 / 97.2/95.6
98.3/97.0
98.0/96.7 / 98.8/98.0
97.3/95.6
97.2/95.8 / 97.1/95.6
98.3/97.5
98.2/97.3 / 97.3/95.6
98.6/97.8
98.4/97.7 / 97.8/96.1
99.2/98.9
98.8/98.0 / 97.8/96.1
98.9/97.8
98.5/97.2 / 88.3/87.7
88.9/88.6
89.0/88.6 / 96.2/93.6
97.6/95.8
97.4/95.1 / 97.8/96.1
99.2/98.9
98.8/98.0 / 96.7/94.2
97.7/95.8
97.6/95.8 / 96.6/94.9
97.5/96.5
97.4/96.3 / -
97.9/96.6
97.8/96.2 / 97.9/96.6
-
98.9/98.1 / 97.8/96.2
98.9/98.1
-
ORF2/P2 / 1/045
1/046
1/047 / 98.3/98.1
98.3/97.6
97.9/98.1 / 98.3/99.0
98.4/98.5
98.1/99.0 / 97.4/97.6
97.4/97.1
97.0/97.6 / 98.3/98.2
98.3/97.7
97.9/98.2 / 97.9/98.2
98.0/97.7
97.6/98.2 / 98.8/99.2
99.0/99.0
98.4/99.2 / 98.3/98.4
98.4/97.9
98.1/98.4 / 99.0/99.2
99.0/98.7
98.6/99.2 / 98.7/99.4
98.7/98.9
98.5/99.4 / 95.4/95.8
95.4/95.3
95.5/96.3 / 97.9/97.6
97.8/97.2
97.5/97.6 / 99.0/99.2
99.0/98.7
98.6/99.2 / 97.8/97.2
97.8/96.9
97.4/97.2 / 98.1/98.2
98.1/97.8
97.8/98.3 / -
99.1/99.5
98.5/99.7 / 99.1/99.5
-
98.6/99.2 / 98.5/99.7
98.6/99.2
-
ORF3/P3 / 1/045
1/046
1/047 / 99.5/99.5
99.7/99.5
99.4/99.0 / 99.4/99.0
99.5/99.0
99.2/98.6 / 99.8/100
99.7/100
99.4/99.5 / 99.4/99.0
99.5/99.0
99.2/98.6 / 99.0/99.5
99.2/99.5
98.9/99.0 / 99.0/99.0
98.9/99.0
98.6/98.6 / 99.2/98.6
99.4/98.6
99.0/98.1 / 99.2/100
99.4/100
99.0/99.5 / 98.9/97.6
99.0/97.6
98.7/97.1 / 97.3/97.6
97.1/97.6
96.8/97.1 / 99.5/99.0
99.7/99.0
99.4/98.6 / 99.2/100
99.4/100
99.0/99.5 / 98.9/98.6
99.0/98.6
98.7/98.1 / 99.1/99.0
99.2/99.0
98.9/98.6 / -
99.8/100
99.5/99.5 / 99.8/100
-
99.7/99.5 / 99.5/99.5
99.7/99.5
-
ORF4/P4 / 1/045
1/046
1/047 / 99.6/99.4
99.8/100
99.6/99.4 / 99.4/98.7
99.6/99.4
99.4/98.7 / 99.8/99.4
99.6/98.7
99.4/98.1 / 99.4/98.7
99.6/99.4
99.4/98.7 / 98.7/96.8
98.9/97.4
98.7/96.8 / 99.4/98.7
99.2/98.1
98.9/97.4 / 99.2/97.4
99.4/98.1
99.2/97.4 / 99.4/98.1
99.6/98.7
99.4/98.1 / 99.2/98.7
99.4/99.4
99.2/98.7 / 97.9/95.5
97.7/94.9
97.5/94.2 / 99.6/99.4
99.8/100
99.6/99.4 / 99.4/98.1
99.6/98.7
99.4/98.1 / 98.7/97.4
98.9/98.1
98.7/97.4 / 99.2/98.2
99.3/98.5
99.1/97.9 / -
99.8/99.4
99.6/98.7 / 99.8/99.4
-
99.8/99.4 / 99.6/98.7
99.8/99.4
-
ORF5/P5 / 1/045
1/046
1/047 / 98.1/97.9
98.1/97.5
98.2/97.8 / 98.2/97.2
98.2/96.8
97.8/95.9 / 98.4/97.9
98.1/97.2
97.8/96.6 / 98.1/97.6
98.1/97.2
98.1/97.5 / 98.1/98.0
98.2/97.4
98.0/97.1 / 98.3/98.5
98.1/97.8
97.9/96.8 / 98.1/97.2
98.1/96.5
98.0/96.5 / 98.5/97.9
98.5/97.5
98.7/98.0 / 98.2/97.4
98.2/96.8
98.0/96.5 / 95.5/96.7
95.3/96.2
95.0/95.7 / 98.1/97.6
98.1/96.9
98.0/96.6 / 98.5/97.9
98.5/97.5
98.7/98.0 / 98.4/98.0
98.6/97.6
98.4/97.5 / 98.0/97.7
98.0/97.1
97.9/97.0 / -
98.9/98.5
98.4/97.2 / 98.9/98.5
-
98.6/97.1 / 98.4/97.2
98.6/97.1
-
ORF6/P6 / 1/045
1/046
1/047 / 97.4/95.2
97.4/95.2
97.9/96.8 / 98.9/96.8
98.9/96.8
99.5/98.4 / 98.4/95.2
98.4/95.2
98.9/96.8 / 96.8/95.2
96.8/95.2
97.4/96.8 / 98.4/96.8
98.4/96.8
98.9/98.4 / 96.8/59.7
96.8/61.3
97.4/61.3 / 97.4/96.8
97.4/96.8
97.9/98.4 / 98.9/98.4
98.9/98.4
99.5/100 / 98.4/96.8
98.4/96.8
98.9/98.4 / 96.8/58.1
96.8/59.7
97.4/59.7 / 98.4/96.8
98.4/96.8
98.9/98.4 / 98.9/98.4
98.9/98.4
99.5/100 / 98.9/98.4
98.9/98.4
99.5/100 / 98.0/91.0
98.0/91.2
98.6/95.2 / -
98.9/96.8
99.5/98.4 / 98.9/96.8
-
99.5/98.4 / 99.5/98.4
99.5/98.4
-
ORF7/P7 / 1/045
1/046
1/047 / 96.8/96.8
96.0/92.8
96.8/95.2 / 96.8/94.4
96.0/90.4
95.0/88.8 / 98.1/97.6
96.8/93.6
96.0/92.0 / 96.8/96.8
96.0/92.8
96.8/95.2 / 97.4/96.0
96.6/92.0
96.3/92.0 / 97.6/98.4
96.8/94.4
95.8/92.0 / 97.1/94.4
95.8/90.4
96.6/93.6 / 97.4/95.2
96.6/91.2
97.9/96.0 / 97.4/96.0
96.6/92.0
96.0/92.0 / 95.8/96.0
94.4/92.0
93.9/91.2 / 97.4/96.8
96.6/93.6
96.0/92.0 / 97.4/95.2
96.6/91.2
97.9/96.0 / 97.6/98.4
96.8/94.4
96.3/93.6 / 97.2/96.3
96.3/92.4
96.3/93.0 / -
97.6/96.0
96.6/93.6 / 97.6/96.0
-
96.3/91.2 / 96.6/93.6
96.3/91.2
-
Rap1/
Rap1 / 1/045
1/046
1/047 / 99.3/89.1
99.3/89.1
99.3/89.1 / 99.3/89.1
99.3/89.1
99.3/89.1 / 79.6/80.4
79.6/80.4
79.6/80.4 / 99.3/89.1
99.3/89.1
99.3/89.1 / 97.2/93.5
97.2/93.5
97.2/93.5 / 99.3/97.8
99.3/97.8
99.3/97.8 / 99.3/97.8
99.3/97.8
99.3/97.8 / 100/100
100/100
100/100 / 99.3/89.1
99.3/89.1
99.3/89.1 / 72.7/56.5
72.7/56.5
72.7/56.5 / 100/100
100/100
100/100 / 100/100
100/100
100/100 / 99.3/97.8
99.3/97.8
99.3/97.8 / 95.7/90.8
95.7/90.8
95.7/90.8 / -
100/100
100/100 / 100/100
-
100/100 / 100/100
100/100
-

a Sequences with the highest nucleotide identity(%) are indicated in bold letters, the sequences with the lowest nucleotide identity are indicated in cursive. Mean values werealso compared with each other. The comparisonsamong the Czech isolates were judged separately.

b The mean is the arithmetic average of 13 values of comparisons between Czech and worldwide isolates in the same row.

cNucleotide/amino acid identity