SupplementaryTable6Identification of putative targets for conserved and novel C. intermediamiRNAs. Function was inferred using C. intermedia sequences as query for BLASTx searches against non-redundant proteinssequences from the NCBI database

miRNA / Target EST / Annotation / Score/E-value
cin-miR156 b, c, e, h, n, p, q, s
cin-miR157a, b / KC256967 / XP_003553944, squamosa promoter-binding-like protein 16-like [Glycine max]. / 471/8E-161
cin-miR156 n, p / KC256968 / XP_003613183, Knotted-1 homeobox protein [Medicagotruncatula]. / 466/4E-161
cin-miR156e, s / KC256969 / XP_003624118, Cytochrome P450 [Medicagotruncatula]. / 560/0
cin-miR156c / KC256970 / XP_003592432, Speckle-type POZ protein-like protein [Medicagotruncatula]. / 175/7E-48
cin-miR156o / KC256971 / XP_003545948, E3 ubiquitin-protein ligase RMA1H1-like [Glycine max]. / 240/1E-76
cin-miR156k / KC256972 / CAC95126, gag-polpolyprotein [Populusdeltoides]. / 1053/0
cin-miR159c / KC256973 / XP_003551852, HEAT repeat-containing protein 5B-like [Glycinemax]. / 1554/0
cin-miR159a, b, d , cin-miR319a / KC256974 / XP_003541563, transcription factor GAMYB-like [Glycinemax]. / 416/2E-139
cin-miR160 / KC256975 / XP_003540185, auxin response factor 18-like [Glycinemax] / 655/0
cin-miR164a, b, c, d, e, f, / KC256976 / ACD39383, NAC domain protein, partial [Glycinemax]. / 160/1E-45
cin-miR165a, b,
cin-miR166b, d, e, f, h, j, k, l, m, n, p, r / KC256977 / XP_003539765, homeobox-leucine zipper protein REVOLUTA-like isoform 2 [Glycinemax]. / 377/4E-120
cin-miR165a, b,
cin-miR166b d, e, f, h, j, k, l, m, n, p, r / KC256978 / ACI13684,putative REV HD-ZipIII [Malus x domestica]. / 202/9E-59
cin-miR171e / KC256979 / XP_002278756, elongation factor 1-gamma-like [Vitisvinifera]. / 417/3E-142
cin-miR171 c, d, f, g, h, i, / KC256980 / XP_003605197, GRAS family transcription factor [Medicagotruncatula]. / 631/0
cin-miR172g / KC256981 / XP_003536336, vacuolar protein sorting-associated protein 33 homolog isoform 1 [Glycinemax]. / 461/6E-155
cin-miR172c / KC256982 / XP_003546532, pectinesterase/pectinesterase inhibitor PPE8B-like[Glycinemax]. / 828/0
cin-miR172a, b, e, f / KC256983 / XP_002322849,AP2domain-containing transcription factor [Populustrichocarpa] / 91.3 /3E-19
cin-miR172 a, b, d, e, f, / KC256984 / XP_003540753, ethylene-responsive transcription factor RAP2-7-like[Glycinemax]. / 171/8E-47
cin-miR172g / KC256985 / XP_003547455, pathogenesis-related homeodomain protein-like [Glycinemax]. / 96.7/4E-21
cin-miR394 / KC256986 / XP_003627348, Protein FAM48A [Medicagotruncatula]. / 1461/0
cin-miR396a, b, d, e, g / KC256987 / XP_003627270, GRL2 [Medicagotruncatula]. / 139/4E-38
cin-miR396a, b, d, e, g / KC256988 / XP_003627681, Growth-regulating factor [Medicagotruncatula]. / 252/6E-78
cin-miR396a, b, d, e, / KC256989 / XP_003555569, pentatricopeptide repeat-containing protein At1g08610-like [Glycinemax]. / 501/3E-171
cin-miR396b / KC256990 / XP_003547866, phototropin-2-like [Glycinemax]. / 791/0
cin-miR397a, d / KC256991 / XP_003594882, Cellulose synthase [Medicagotruncatula]. / 470/5E-155
cin-miR397a, b, c, d, / KC256992 / XP_003551449, laccase-17-like [Glycinemax]. / 618/0
cin-miR397a, b, c, d, / KC256993 / XP_003604619, Laccase 1a [Medicagotruncatula]. / 548/0
cin-miR397a, b, c, d, / KC256994 / XP_003540719, laccase-2-like [Glycinemax]. / 145/1E-39
cin-miR399c / KC256995 / XP_003627371, COP1-interacting protein 7 (CIP7)-like protein[Medicagotruncatula]. / 942/0
cin-miR399d / KC256996 / XP_003532225, nucleolar GTP-binding protein 1-like [Glycinemax]. / 486/3E-169
cin-miR408a / KC256997 / XP_003546924, pre-mRNA-processing-splicing factor 8-like [Glycinemax]. / 643/0
cin-miR530 / KC256998 / XP_003533290, DNA-binding protein RHL1-like [Glycinemax]. / 450/1E-154
cin-miR1514 / KC256999 / XP_003524978, heat stress transcription factor A-4a-like [Glycine max] / 652/0
cin-miR2118 / KC257000 / XP_003607691, Tir-nbs-lrr resistance protein [Medicagotruncatula] / 97.1/1 E-21
cin-miR2118 / KC257001 / XP_003620205, Disease resistance protein [Medicagotruncatula]. / 283/4E-85
cin-miR2119 / KC257002 / XP_003597674, MMS19 nucleotide excision repair protein-like protein [Medicagotruncatula]. / 258/3E-77
cin-novel-2 / KC257003 / XP_003591240, Ser-thr protein kinase [Medicagotruncatula]. / 568/0
cin-novel-2 / KC257004 / XP_003609305, Kinase-like protein [Medicagotruncatula]. / 181/5E-51