SupplementaryTable 1.Newly generated sequences and ex-type strains indicated in bold.

Species name / strain / GenBank accession number
ITS / LSU / SSU / TEF1 / RPB2
Aigialus grandis / BCC 18419Ts / – / GU479774 / GU479738 / GU479838 / GU479813
Alternaria alternata / CBS 916.96T / FJ196306 / DQ678082 / DQ678031 / DQ677927 / DQ677980
Amaranomyces ammophilae / CBS 114595Ts / – / GU301859 / GU296185 / GU349035 / GU371724
Amniculicola immersa / CBS 123083T / – / FJ795498 / GU456295 / GU456273 / GU456358
Ampelomyces quisqualis / CBS 129.79Ts / HQ108038 / EU754128 / EU754029 / – / –
Ascochyta pisi / CBS 126.54Ts / GU237772 / DQ678070 / DQ678018 / DQ677913 / DQ677967
Bambusicolabambusae / MFLUCC 11-0614T / JX442031 / JX442035 / JX442039 / – / –
Bambusicolamassarinia / MFLUCC 11-0389T/Ts / JX442033 / JX442037 / JX442041 / – / –
Bambusicolasplendida / MFLUCC 11-0439T / JX442034 / JX442038 / JX442042 / – / –
Byssosphaeriasalebrosa / SMH2387 / – / GU385162 / – / GU327748 / –
Byssothecium circinans / CBS 675.92Ts / – / AY016357 / AY016339 / GU349061 / DQ767646
Chaetosphaeronema hispidulum / CBS 216.7Ts5 / KF251148 / KF251652 / EU754045 / – / KF252157
Cochliobolus heterostrophus / CBS 134.39Ts / – / AY544645 / AY544727 / DQ497603 / DQ247790
Cucurbitaria berberidis / CBS 130007T/
MFLUCC 11-0384 / – / KC506793 / KC506797 / – / –
Cucurbitaria berberidis / CBS 363.93 / JF740191 / GQ387606 / GQ387545 / – / –
Deniquelata barringtoniae / MFLUCC11-0422T/Ts / JX254654 / JX254655 / JX254656 / – / –
Dermatiopleospora mariae / MFLUCC 13-0612T/Ts / – / KJ749653 / KJ749652 / – / –
Didymella exigua / CBS 183.55T/Ts / GU237794 / EU754155 / EU754056 / – / GU371764
Dothidotthiaaspera / CPC 12933 / – / EU673276 / EU673228 / – / –
Dothidotthia symphoricarpi / CPC 12929/CBS 119687T/Ts / – / EU673273 / EU673224 / – / –
Entodesmium rude / CBS 650.86Ts / – / GU301812 / – / GU349012 / –
Fissuroma aggregata / MFLUCC 10-0554T / JN846718 / JN846722 / JN846732 / – / –
Halojulella avicenniae / BCC 18422Ts / – / GU371823 / GU371831 / GU371816 / GU371787
Halojulella avicenniae / BCC 20173Ts / – / GU371822 / GU371830 / GU371815 / GU371786
Species name / strain / GenBank accession number
ITS / LSU / SSU / TEF1 / RPB2
Halotthia posidoniae / BBH 22481Ts / – / GU479786 / GU479752 / – / –
Herpotrichia diffusa / CBS 250.62 / – / DQ678071 / DQ678019 / DQ677915 / DQ677968
Kalmusia brevispora / KT 2313 / – / AB524601 / AB524460 / AB539113 / AB539100
Katumotoa bambusicola / KT 1517a/MAFF 239641T/Ts / – / AB524595 / AB524454 / AB539108 / AB539095
Letendraea cordylinicola / MFLUCC 11-0148 / KM214001 / KM213995 / KM213998 / – / –
Letendraea cordylinicola / MFLUCC 11-0150 / KM214002 / KM213996 / KM213999 / – / –
Lentithecium aquaticum / CBS 123099T / – / GU301823 / GU296156 / GU349068 / GU371789
Lentithecium fluviatile / CBS 122367Ts / – / GU301825 / GU296158 / GU349074 / –
Leptosphaeria doliolum / CBS 505.75T/Ts / JF740205 / GU301827 / GU296159 / GU349069 / –
Leptosphaeria dryadis / CBS 643.86 / JF740213 / GU301828 / KC584632 / GU349009 / GU371733
Leptosphaeria maculans / DAOM 229267 / – / DQ470946 / DQ470993 / DQ471062 / DQ470894
Leptosphaerulina australis / CBS 311.51T/TS / – / FJ795500 / – / GU456272 / GU456357
Lindgomyces breviappendiculatus / JCM 12701/MAFF 239292T / JF419897 / AB521748 / AB521733 / KF314133 / –
Lindgomyces cinctosporae / R56-1T / JF419905 / AB522431 / AB522430 / – / –
Lindgomyces ingoldianus / ATCC 200398T/Ts / JF419898 / AB521736 / AB521719 / – / –
Loratospora aestuarii / JK 5535BTs / – / GU301838 / GU296168 / – / GU371760
Macroventuria anomochaeta / CBS 525.71T/Ts / GU237881 / GU456315 / GU238208 / GU456262 / GU456346
Massaria inquinans / M 19/CBS 125591T/Ts / HQ599402 / HQ599402 / HQ599444 / HQ599342 / HQ599460
Massarina eburnea / CBS 473.64Ts / – / GU301840 / GU296170 / GU349040 / GU371732
Mauritiana rhizophorae / BCC 28866Ts / – / GU371824 / GU371832 / GU371817 / GU371796
Melanomma pulvis-pyrius / CBS 124080T/Ts / – / GU456323 / GU456302 / GU456265 / GU456350
Montagnula opulenta / CBS 168.34 / – / DQ678086 / NG_013127 / – / DQ677984
Mycopappus aceris / CBS 124109/ CPC 14380 / FJ839625 / FJ839660 / – / – / –
Neoastrosphaeriella krabiensis / MFLUCC 11-0025T/Ts / JN846715 / JN846729 / JN846739 / – / –
Neoroussoellabambusae / MFLUCC11-0124T/Ts / KJ474827 / KJ474839 / – / KJ474848 / KJ474856
Species name / strain / GenBank accession number
ITS / LSU / SSU / TEF1 / RPB2
Neosetophoma samarorum / CBS 138.96T/Ts / KF251160 / KF251664 / GQ387517 / – / KF252168
Neostagonospora caricis / CBS 135092/S616T/Ts / KF251163 / KF251667 / – / – / KF252171
Neostagonospora elegiae / CBS 135101T / KF251164 / KF251668 / – / – / KF252172
Nodulosphaeria modesta / MFLUCC 11-0461 / KM434275 / KM434285 / KM434294 / – / –
Ophiobolus cirsii / MFLUCC 13-0218 / KM014664 / KM014662 / KM014663 / – / –
Ophiobolus erythrosporus / MFLU 12-2225 / – / KM014665 / KM014666 / – / –
Ophiosphaeriella agrostidis / MFLUCC 11-0152 / KM434271 / KM434281 / KM434290 / KM434299 / –
Ophiosphaeriella agrostidis / MFLUCC 12-0007 / KM434272 / KM434282 / KM434291 / KM434300 / KM434308
Ophiosphaerella herpotricha / CBS 620.86 / KF498728 / DQ678062 / DQ678010 / DQ677905 / DQ677958
Ophiosphaerella sasicola / JCM 13134/MAFF 239644 / – / AB524599 / AB524458 / AB539111 / AB539098
Paraphaeosphaeria michotii / CBS 652.86Ts / JX496103 / GQ387581 / GQ387520 / GU456266 / GU456351
Paraphoma radicina / CBS 111.79T/Ts / KF251172 / KF251676 / EU754092 / GU349076 / KF252180
Parastagonospora caricis / CBS 135671/S615T / KF251176 / KF251680 / KF252184
Parastagonospora nodorum / CBS 110109Ts / KF251177 / KF251681 / EU754076 / – / KF252185
Parastagonospora poae / CBS 135089/S606T / KF251178 / KF251682 / KF253136 / KF252186
Phaeosphaeria alpina / CBS 456.84T / KF251181 / KF251684 / – / KF252188
Phaeosphaeria avenaria / DAOM 226215/OSC 100096 / – / AY544684 / AY544725 / DQ677885 / DQ677941
Phaeosphaeria chiangraina / MFLUCC 13-0231T / KM434270 / KM434280 / KM434289 / KM434298 / KM434307
Phaeosphaeria eustoma / CBS 573.86 / AF439479 / DQ678063 / DQ678011 / DQ677906 / DQ677959
Phaeosphaeria juncicola / CBS 110108 / KF251183 / KF251686 / – / KF253141 / KF252190
Phaeosphaeria musae / CBS 120026T / DQ885894 / GU301862 / GU296186 / GU349037 / –
Phaeosphaeria musae / MFLUCC 11-0133 / KM434267 / KM434277 / KM434287 / KM434296 / KM434304
Phaeosphaeria musae / MFLUCC 11-0151 / KM434268 / KM434278 / KM434288 / KM434297 / KM434305
Phaeosphaeria nigrans / CBS 307.79 / KF251184 / KF251687 / – / KF253142 / KF252191
Phaeosphaeria oryzae / CBS 110110 T / KF251186 / KF251689 / GQ387530 / – / KF252193
Species name / strain / GenBank accession number
ITS / LSU / SSU / TEF1 / RPB2
Phaeosphaeria oryzae / MFLUCC 11-0170 / KM434269 / KM434279 / – / – / KM434306
Phaeosphaeria papayae / CBS 135416/S528T / KF251187 / KF251690 / – / – / KF252194
Phaeosphaeria phragmiticola / CBS 459.84T / KF251188 / KF251691 / – / KF252195
Phaeosphaeria pontiformis / CBS 117487 / KF251189 / KF251692 / – / – / KF252196
Phaeosphaeria thysanolaenicola / MFLUCC 10-0563T / KM434266 / KM434276 / KM434286 / KM434295 / KM434303
Phaeosphaeria typharum / CBS 296.54 / KF251192 / KF251695 / – / GU456287 / KF252199
Phaeosphaeria vagans / CBS 604.86 / KF251193 / KF251696 / – / KF252200
Phaeosphaeriopsis dracaenicola / MFLUCC 11-0157T / KM434273 / KM434283 / KM434292 / KM434301 / KM434309
Phaeosphaeriopsis dracaenicola / MFLUCC 11-0193 / KM434274 / KM434284 / KM434293 / KM434302 / KM434310
Phaeosphaeriopsis glaucopunctata / MFLUCC 13-0220 / KJ522474 / KJ522478 / KJ522482 / – / –
Phaeosphaeriopsis glaucopunctata / MFLUCC 13-0265T/Ts / KJ522473 / KJ522477 / KJ522481 / – / –
Phaeosphaeriopsis triseptata / MFLUCC 13-0271T / KJ522475 / KJ522479 / KJ522484 / – / KJ522485
Phaeosphaeriopsis triseptata / MFLUCC 13-0347 / KJ522476 / KJ522480 / KJ522483 / – / KJ522486
Phoma herbarum / CBS 276.37T/Ts / JF810524 / DQ678066 / DQ678014 / DQ677909 / DQ677962
Pleomassaria siparia / CBS 279.74Ts / – / DQ678078 / DQ678027 / DQ677923 / DQ677976
Pleospora herbarum / CBS 191.86T/Ts / KC584239 / DQ247804 / DQ247812 / DQ471090 / DQ247794
Prosthemium betulinum / CBS 127468Ts / AB554085 / AB553754 / AB553644 / – / –
Prosthemiumorientale / JCM 12841/MAFF 239509 / AB554079 / AB553748 / AB553641 / – / –
Pyrenochaeta nobilis / CBS 407.76T/Ts / NR_103598 / DQ678096 / EU754107 / DQ677936 / DQ677991
Pyrenophora phaeocomes / DAOM 222769 Ts / DQ491507 / DQ499596 / DQ499595 / DQ497607 / DQ497614
Repetophragma ontariense / HKUCC 10830 / – / DQ408575 / – / DQ435077 / –
Roussoella nitidula / MFLUCC11-0182T/Ts / KJ474835 / KJ474843 / – / KJ474852 / KJ474859
Roussoellopsis macrospora / MFLUCC12-0005T / KJ739604 / KJ474847 / KJ739608 / KJ474855 / KJ474862
Sclerostagonospora cycadis / CBS 123538T / FJ372393 / FJ372410 / – / – / –
Species name / strain / GenBank accession number
ITS / LSU / SSU / TEF1 / RPB2
Sclerostagonospora phragmiticola / CBS 338.86T / KF251230 / KF251733 / – / – / KF252235
Scolicosporium minkeviciusii / MFLUCC 12-0089T / – / KF366382 / KF366383 / – / –
Setomelanomma holmii / CBS 110217Ts / – / GU301871 / GU296196 / GU349028 / GU371800
Setophoma chromolaena / CBS 135105T/CPC 18553 / KF251244 / KF251747 / – / – / KF252249
Setophoma sacchari / CBS 333.39T / KF251245 / KF251748 / GQ387525 / – / KF252250
Setophoma sacchari / MFLUCC11-0154 / KJ476144 / KJ476146 / KJ476148 / KJ461319 / KJ461317
Setophoma sacchari / MFLUCC 12-0241 / KJ476145 / KJ476147 / KJ476149 / KJ461318 / –
Setophoma terrestris / CBS 335.29T/Ts / KF251246 / KF251749 / GQ387526 / – / KF252251
Vrystaatia aloeicola / CBS 135107/CPC 20617T/Ts / KF251278 / KF251781 / – / – / KF252283
Wojnowicia hirta / CBS 295.69Ts / – / EU754223 / EU754124 / – / –
Wojnowicia hirta / CBS 160.73Ts / – / EU754222 / EU754123 / – / –
Wojnowicia viburni / MFLUCC 120733/ICMP 19778T / – / KC594287 / KC594288 / – / –
Xenoseptoria neosaccardoi / CBS 120.43Ts / KF251280 / KF251783 / – / – / KF252285
Xenoseptoria neosaccardoi / CBS 128665T/Ts / KF251281 / KF251784 / – / – / KF252286
Xenostigmina zilleri / CBS 115686 / GU269841 / GU253858 / – / GU384554 / –

Abbreviations: ATCC: American Type Culture Collection, Virginia, U.S.A.; BBH: BIOTEC Bangkok Herbarium, Thailand; BCC: BIOTEC CultureCollection, Bangkok, Thailand;CBS: CentraalbureauvoorSchimmelcultures, Utrecht, The Netherlands; DAOM: Plant Research Institute, Department of Agriculture (Mycology), Ottawa, Canada;HKUCC: University of Hong Kong Culture Collection, Department of Ecology and Biodiversity, Hong Kong, China; JCM: The Japan Collection of Microorganisms, Japan; MAFF: Ministry of Agriculture, Forestry and Fisheries, Japan; MFLU: Mae Fah Luang University Herbarium, Chiang Rai, Thailand; MFLUCC: Mae Fah Luang University Culture Collection, Chiang Rai, Thailand; Culture and specimen abbreviations: CPC:Collection of Pedro Crous housed at CBS; JK: J. Kohlmeyer; KT: K. Tanaka; M19: H. Voglmayr; R: H.A. Raja;S: Working collection of William Quaedvlieg; SMH: S.M. Huhndorf; T: ex-type/ex-epitype isolates; Ts: type species.