Supplementary Table 4 [TS4]. Putative cis-acting regulatory motifs in Cp45 (hypersensitive-induced response) papaya promoter. Putative motifs recognized by transcription factors (TF) were found using PlantCARE program (Selected Matrix Score for all elements is 5. The site name, consensus sequence and the first organism where it was described were indicated. The strand positions (+) and (-) indicate sense or antisense DNA strands.

Function / Motif / Species / Sequence / Motif Sequence Found / Matrix Score / Position / Strand
α Amylase / A-Box / Oryza sativa / AATAACAAACTCC / GAGTTTTTTATT / 12 / 1306-1317 / -
Abscisic acid / ABRE / Arabidopsis thaliana / TACGGTC / GACCGTA / 7 / 902-908 / -
TACGTG / TACGTG / 6 / 461-466 / +
Anaerobic Induction / ARE / Zea mays / TGGTTT / AAACCA / 6 / 655-660 / -
TGGTTT / TGGTTT / 6 / 1467-1472 / +
TGGTTT / AAACCA / 6 / 1232-1237 / -
TGGTTT / TGGTTT / 6 / 2003-2008 / +
AT-rich DNA binding protein / AT-rich element / Glycine max / ATAGAAATCAA / TTGATTTCCAT / 10 / 1358-1368 / -
ATAGAAATCAA / ATAGAAACTAA / 10 / 1512-1522 / +
Defense and Stress / TC-rich repeats / Nicotiana tabacum / ATTTTCTTCA / TCAAGAAAATT / 9 / 581-591 / -
ATTTTCTTCA / TGCAGAAAAT / 9 / 1884-1893 / -
Drought / MBS / Arabidopsis thaliana / TAACTG / CAGTTA / 6 / 1491-1496 / -
TAACTG / TAACTG / 6 / 69-74 / +
Endosperm Expression / AACA motif / Oryza sativa / TAACAAACTCCA / TGGAGTTTGTTA / 11 / 1304-1315 / -
GCN4 motif / CAAGCCA / TGGCTTG / 7 / 1240-1246 / -
Skn-1 motif / GTCAT / GTCAT / 5 / 608-612 / +
Elicitor Responsive / ELI-box3 / Brassica oleracea / AAACCAATT / AAACCAATT / 9 / 655-663 / +
Enhancer / TA-rich region / Nicotiana tabacum / TATATATATATAT / ATATATATATAT / 20 / 709-721 / +
Gibberellin / GARE-motif / Brassica oleracea / AAACAGA / TCTGTTT / 7 / 807-813 / -
TCTGTTG / CAACATA / 7 / 24-30 / -
Heat Stress / HSE / Brassica oleracea / AAAAAATTTC / GAAAAATTTT / 9 / 1170-1179 / +
Light Responsiveness / 3-AF1 binding site / Solanum tuberosum / AAAACGTTTA / AAATATCTCTA / 10 / 1889-1899 / -
ATC- motif / Arabidopsis thaliana / GCCAATCC / GGACTTTT / 8 / 844-851 / -
ATCT motif / Arabidopsis thaliana / AATCTAATCT / AATCTAATCA / 9 / 1499-1510 / +
Box I / Pisum sativum / TTTCAAA / TTTCAAA / 7 / 949-956 / +
TTTCAAA / TTTGAAA / 7 / 1016-1022 / -
Box 4 / Petroselinum crispum / ATTAAT / ATTAAT / 6 / 302-307 / +
ATTAAT / ATTAAT / 6 / 1496-1501 / +
ATTAAT / ATTAAT / 6 / 1545-1550 / +
ATTAAT / ATTAAT / 6 / 1799-1804 / +
G-Box / Antirrhinum majus / CACGTA / TACGTG / 6 / 461-466 / -
G-box / Nicotiana tabacum / CAGACGTGGCA / CAGACGTGGCA / 10 / 733-743 / +
Daucus carota / TACGTG / TACGTG / 6 / 461-466 / +
GAG-motif / Hordeum vulgare / GGAGATG / CATCTCC / 7 / 140-146 / -
MRE / Petroselinum crispum / AACCTAA / AACCTAA / 7 / 329-335 / +
Low Temperature Response / LTR / Hordeum vulgare / CCGAAA / CCGAAA / 6 / 680-685 / +
Methyl jasmonate / CGTCA-motif / Hordeum vulgare / CGTCA / CGTCA / 5 / 781-785 / +
TGACG-motif / TGACG / CGTCA / 5 / 781-785 / -
Meristem
specific activation / dOCT / Arabidopsis thaliana / CaCGGATC / CACGGATC / 8 / 771-778 / +
Salicylic acid / TCA-element / Brassica oleracea / CAGAAAAGGA / TCCTTTTCTA / 9 / 1067-1076 / -