Supplementary Table 1: list of 116 differentially expressed genes in the OsTEF1 mutant

Probe Id / Gene Id / Gene Annotation / Fold Change
Os.26695.1.S1_at / LOC_Os03g60080 / NAC domain-containing protein / 2.84 -
Os.51926.1.S1_at / LOC_Os11g08210 / NAC domain-containing protein / 3.86 +
OsAffx.24166.1.S1_at / LOC_Os02g08440 / OsWRKY71 / 4.68 -
Os.25606.1.S1_at / LOC_Os09g25060 / OsWRKY76 / 3.4 -
Os.48082.1.S1_at / LOC_Os09g25070 / OsWRKY62 / 5.15 -
Os.56922.1.S1_at / LOC_Os02g26430 / OsWRKY42 / 2.82 -
Os.4184.1.S1_at / LOC_Os02g15350 / zinc finger family protein / 5.02 +
Os.1726.1.S1_at / LOC_Os01g18240 / MYB2 / 2.17 -
Os.3388.2.S1_a_at / LOC_Os04g43680 / myb-related protein Myb4 / 2.91 -
Os.1229.2.S1_x_at / LOC_Os01g13740 / myb-like DNA-binding protein / 2.87 +
Os.24561.1.S1_s_at / LOC_Os06g43790 / HAF01 / 2.87 +
Os.34549.1.S1_at / LOC_Os07g43530 / helix-loop-helix DNA binding domain / 2.98 +
Os.4164.2.S1_a_at / LOC_Os03g03164 / homeobox protein HD1 / 4.05 -
Os.6043.1.S1_at / LOC_Os04g23550 / DNA binding like / 4.11 -
Os.8833.1.S1_at / LOC_Os04g48070 / homeobox protein OCL1 / 2.24 -
Os.21636.2.S1_a_at / LOC_Os09g36250 / odorant 1 protein / 3.22 -
Os.11766.1.S1_at / LOC_Os07g36170 / chitin-inducible gibberellin-responsive protein / 2.27 -
Os.14500.1.S1_at / LOC_Os03g53960 / transcriptional adaptor / 2.65 +
Os.3766.1.S1_at / LOC_Os01g58420 / ethylene-responsive transcription factor / 2.47 -
Os.55386.1.A1_at / LOC_Os10g41330 / ethylene-responsive transcription factor / 3.55 -
Os.11944.1.S1_at / LOC_Os09g20350 / DRE binding factor 1 / 2.24 +
Os.40428.1.S1_at / LOC_Os01g73770 / DREB protein 1C / 2.91 -
OsAffx.27442.1.S1_at / LOC_Os06g03670 / DREB protein 1A / 5.90 -
Os.50639.1.S1_at / LOC_Os02g43970 / DREB protein 1A / 2.02 -
Os.57527.1.S1_at / LOC_Os04g48350 / DREB protein 1D / 2.34 -
Os.14125.1.S1_at / LOC_Os09g35030 / sbCBF6, DREB / 2.13 -
Os.12167.1.S1_at / LOC_Os02g44870 / dehydrin COR410 / 4.4 -
Os.51718.1.S1_at / LOC_Os11g26780 / dehydrin Rab16B / 6.56 -
Os.53210.1.S1_at / LOC_Os11g26760 / dehydrin Rab16C / 2.55 -
Os.12633.1.S1_at / LOC_Os11g26790 / water stress-inducible protein Rab21 / 4.43 -
Os.5299.2.S1_a_at / LOC_Os05g37970 / USP family protein / 3.41 -
Os.2209.1.S1_at / LOC_Os08g08980 / Cupin domain, germin-like protein / 3.57-
Os.2210.1.S1_at / LOC_Os08g08970 / Cupin domain, germin-like protein / 4.47 -
Os.2211.1.S1_at / LOC_Os08g09010 / Cupin domain, germin-like protein / 2.51 -
Os.2320.1.S1_at / LOC_Os08g09080 / Cupin domain, germin-like protein / 2.97 -
Os.2321.1.S1_at / LOC_Os08g09060 / Cupin domain, germin-like protein / 4.45 -
Os.51482.1.S1_at / LOC_Os07g07350 / Zinc finger A20 AN1 domain containing stress associated protein / 2.42 +
Os.10166.1.S1_at / LOC_Os04g41680 / endochitinase A precursor / 3.22 +
Os.7991.1.S1_at / LOC_Os04g41620 / endochitinase A precursor / 2.96 +
Os.171.1.S1_at / LOC_Os01g47070 / acidic endochitinase precursor / 2.60 -
Os.17479.1.S1_at / LOC_Os01g49320 / acidic endochitinase precursor / 3.45 -
Os.11867.2.S1_at / LOC_Os05g33940 / hsr203J / 2.35 -
Os.5031.1.S1_at / LOC_Os12g36830 / pathogenesis-related protein 10 / 2.09 -
Os.53604.1.S1_at / LOC_Os03g52860 / lipoxygenase 2 / 3.24 -
Os.405.1.S1_a_at / LOC_Os12g37260 / lipoxygenase 2.1, chloroplast precursor / 3.34 -
Os.14415.1.S1_a_at / LOC_Os03g49380 / lipoxygenase 4 / 2.31 -
Os.4416.1.S1_at / LOC_Os08g39840 / lipoxygenase 7, chloroplast precursor / 3.18 -
Os.17509.1.S1_at / LOC_Os02g50490 / endoglucanase 1 precursor / 3.52 -
Os.6247.1.S1_at / LOC_Os09g36350 / endoglucanase 1 precursor / 2.57-
Os.10701.1.S1_at / LOC_Os03g52630 / endo-1,4-beta-glucanase / 2.16 -
Os.2416.1.S1_a_at / LOC_Os01g71340 / glucan endo-1,3-beta-glucosidase / 2.36 -
Os.4159.1.S1_at / LOC_Os01g51570 / glucan endo-1,3-beta-glucosidase / 3.82 -
Os.1385.1.S1_at / LOC_Os01g71670 / glucan endo-1,3-beta-glucosidase / 2.08 +
Os.8178.1.S1_at / LOC_Os11g37970 / win1 precursor / 2.14 +
Os.20289.1.S1_at / LOC_Os11g37960 / win2 precursor / 2.73 -
OsAffx.26050.37.S1_s_at / LOC_Os05g35330 / RuBisCo large chain precursor / 3.80 +
Os.15917.2.A1_at / LOC_Os04g41960 / NADP-dependent oxidoreductase P1 / 2.39 -
Os.8158.1.S1_at / LOC_Os02g54890 / UDP-glucuronate 4-epimerase / 2.0 -
Os.9563.1.S1_at / LOC_Os08g32160 / oxidoreductase / 3.45 -
Os.11556.1.S1_at / LOC_Os07g48030 / peroxidase 2 precursor / 2.56 -
Os.22086.1.S1_at / LOC_Os07g48020 / peroxidase 2 precursor / 3.63 -
Os.2237.1.S1_at / LOC_Os07g48010 / peroxidase 2 precursor / 2.94 +
Os.8684.1.S1_a_at / LOC_Os02g09490 / cinnamyl alcohol dehydrogenase / 2.69 -
Os.10723.1.S1_at / LOC_Os04g48200 / cytochrome P450 87A3 / 2.49 -
Os.12145.1.S1_at / LOC_Os02g47470 / cytochrome P450 90D2 / 2.27 -
Os.14951.1.S1_at / LOC_Os08g39730 / cytochrome P450 76C2 / 3.34 +
Os.15537.1.S1_at / LOC_Os08g39660 / cytochrome P450 76C4 / 2.08 -
Os.7678.1.S1_at / LOC_Os03g12500 / cytochrome P450 74A2 / 2.08 -
OsAffx.10060.1.S1_at / LOC_Os03g12660 / cytochrome P450 724B1 / 2.13 +
Os.12501.1.S1_at / LOC_Os01g55940 / indole-3-acetic acid-amidosynthetase / 3.33 -
Os.10669.1.S1_at / LOC_Os02g08100 / AMP binding protein / 3.04 -
Os.50053.1.A1_at / LOC_Os07g05940 / 9-cis-epoxycarotenoid dioxygenase 1 / 12.94 -
Os.12738.1.S1_a_at / LOC_Os01g48960 / glutamate synthase, chloroplast precursor / 5.39 +
Os.11991.1.S1_at / LOC_Os11g10520 / alcohol dehydrogenase 2 / 3.19 +
Os.7150.1.S1_at / LOC_Os09g31970 / 3-hydroxy-3-methylglutaryl-coenzyme A reductase / 3.46 -
Os.12223.1.S1_at / LOC_Os01g22010 / S-adenosylmethioninesynthetase 1 / 2.28 -
Os.11202.1.S1_at / LOC_Os08g06100 / quercetin 3-O-methyltransferase 1 / 2.47 -
Os.4244.1.S1_at / LOC_Os08g38900 / caffeoyl-CoA O-methyltransferase 1 / 2.32 -
Os.5638.1.S1_at / LOC_Os03g16610 / Laccase precursor / 5.39 -
Os.12346.1.S1_at / LOC_Os01g62480 / Laccase precursor / 4.66 -
Os.25677.1.S1_at / LOC_Os03g28330 / sucrose synthase 2 / 3.03 -
Os.4666.1.S1_at / LOC_Os10g37340 / O-succinylhomoserinesulfhydrylase, / 2.48 -
Os.11510.1.S1_s_at / LOC_Os09g31430 / non-cyanogenic beta-glucosidase precursor / 6.8 -
Os.12416.1.S1_at / LOC_Os11g32650 / chalcone synthase / 2.30 -
Os.7879.2.S1_at / LOC_Os04g56400 / glutamine synthetase / 2.97 +
Os.7657.1.S1_at / LOC_Os03g60090 / methylenetetrahydrofolatereductase / 2.13 -
Os.53946.1.S1_at / LOC_Os08g41440 / NAD-dependent epimerase / 2.55 -
Os.47761.1.S1_at / LOC_Os03g13300 / glutamate decarboxylase / 2.75 -
Os.25687.1.S1_at / LOC_Os02g41680 / Phenylalanine ammonia lyase / 7.94 -
Os.37893.1.S1_at / LOC_Os04g43760 / Phenylalanine ammonia lyase / 3.35 -
Os.9330.1.S2_x_at / LOC_Os02g41630 / Phenylalanine ammonia lyase / 2.40 -
Os.28397.1.S1_at / LOC_Os02g41650 / Phenylalanine ammonia lyase / 4.36 -
Os.12288.1.S1_at / LOC_Os08g13920 / Glycosyl hydrolase family 16 / 4.96 -
Os.12452.1.S1_s_at / LOC_Os08g36910 / alpha-amylase isozyme 3D precursor / 4.72 -
Os.6092.1.S1_at / LOC_Os02g44230 / CPuORF22 - conserved peptide uORF-containing transcript / 2.0 -
Os.6287.1.S1_at / LOC_Os08g14580 / haloaciddehalogenase-like hydrolase domain-containing protein / 3.11 -
OsAffx.30475.5.S1_x_at / LOC_Os12g10570 / ATP synthase beta chain / 19.70 +
Os.12096.4.S1_s_at / LOC_Os12g01530 / ferritin-1, chloroplast precursor / 6.1 +
Os.12520.1.S1_a_at / LOC_Os02g32814 / heavy metal-associated domain containing protein / 2.08 +
Os.15701.1.S1_x_at / LOC_Os07g47350 / potassium transporter 7 / 2.14 -
Os.12092.2.S1_a_at / LOC_Os03g05620 / inorganic phosphate transporter 1-2 / 2.07 -
Os.46160.2.S1_at / LOC_Os10g30790 / inorganic phosphate transporter 1-4 / 2.88 -
Os.50175.2.S1_at / LOC_Os04g51820 / cation transporter HKT4 / 2.06 -
Os.53188.1.S1_at / LOC_Os05g10940 / zinc transporter 4, chloroplast precursor / 2.80 +
OsAffx.12141.1.S1_at / LOC_Os02g21009 / vacuolar cation/proton exchanger 1c / 2.91 +
Os.11450.1.S1_at / LOC_Os01g52110 / RING finger and CHY zinc finger protein / 3.60 +
Os.2256.1.S1_at / LOC_Os05g11320 / metallothionein-like protein type 3 / 2.13 +
Os.37571.1.S1_at / LOC_Os08g37660 / blue copper protein precursor / 4.28 -
Os.27683.2.S1_s_at / LOC_Os03g14370 / ACT domain containing protein / 2.80 -
Os.6671.1.S1_a_at / LOC_Os05g11320 / Spotted leaf protein 11 / 2.75 -
Os.10109.1.S1_at / LOC_Os12g40890 / OsIAA30 / 3.28 -
Os.15798.1.S1_at / LOC_Os06g07040 / OsIAA20 / 2.89 -
Os.9945.1.S1_at / LOC_Os03g43410 / OsIAA12 / 2.2 -
Os.14563.1.S1_at / LOC_Os07g49460 / two-component response regulator-like PRR37 / 5.30 +
Os.9332.2.S1_at / LOC_Os03g32830 / Retrotransposon protein / 2.04 +
Os.57426.1.S1_s_at / LOC_Os05g13940 / Retrotransposon like hypothetical protein / 2.55 -