Information / Position / Strand / Matrix
similarity / Sequence (red: ci value >60; capitals: core sequence)
from / to / anchor
P$ATSR1.01 / Calmodulin binding / CGCG box binding proteins / -1548 / -1532 / -1540 / (+) / 0.933 / atgCGCGtatttcagtg
P$CARE.01 / MYB-like proteins / -1538 / -1522 / -1530 / (+) / 0.950 / ttcagtgAGTTggaaat
P$GATA.01 / Plant I-Box sites / -1511 / -1495 / -1503 / (-) / 0.940 / gacgaGATAaagccggt
P$DOF3.01 / DNA binding with one finger (DOF) / -1511 / -1495 / -1503 / (-) / 0.994 / gacgagatAAAGccggt
P$GAP.01 / GAP-Box (light response elements) / -1487 / -1473 / -1480 / (+) / 0.929 / catgATGAagatcac
P$WRKY.01 / W Box family / -1462 / -1446 / -1454 / (-) / 0.925 / agaatTTGAcgaaacaa
P$TGA1.01 / Plant G-box/C-box bZIP proteins / -1449 / -1429 / -1439 / (+) / 0.902 / ttctcaTGACgaggatcaaag
P$WUS.01 / Arabidopsis homeobox protein / -1429 / -1419 / -1424 / (-) / 1.000 / aacctTAATgc
P$WRKY.01 / W Box family / -1400 / -1384 / -1392 / (-) / 0.943 / atgttTTGAccctcatc
P$O2.01 / Opaque-2 like transcriptional activators / -1340 / -1324 / -1332 / (+) / 0.907 / aaggttatgTCATcaaa
P$ID1.01 / ID domain factors / -1234 / -1222 / -1228 / (+) / 0.967 / aattTTGTccaag
P$BLR.01 / Arabidopsis homeobox protein / -1209 / -1199 / -1204 / (+) / 0.924 / gaaCTTAtttt
P$DOF1.01 / DNA binding with one finger (DOF) / -1140 / -1124 / -1132 / (-) / 0.983 / ttaaaactAAAGgaaat
P$WRKY.01 / W Box family / -1121 / -1105 / -1113 / (+) / 0.958 / gacttTTGActttgtga
P$HDG9.01 / L1 box, motif for L1 layer-specific expression / -1107 / -1091 / -1099 / (+) / 0.945 / tgaaatTAAAtgctcaa
P$DINR.01 / Core promoter initiator elements / -1058 / -1048 / -1053 / (-) / 0.966 / ggTCAGttgaa
P$SBF1.01 / GT-box elements / -1020 / -1004 / -1012 / (+) / 0.909 / tttggcaTTAAaaaatc
P$WUS.01 / Arabidopsis homeobox protein / -1016 / -1006 / -1011 / (-) / 1.000 / tttttTAATgc
P$CAAT.01 / CCAAT binding factors / -1006 / -998 / -1002 / (+) / 0.991 / atCCAAtgt
P$ICE.01 / Myc-like basic helix-loop-helix binding factors / -981 / -963 / -973 / (+) / 0.977 / gatatACATttgtctttgg
P$ID1.01 / ID domain factors / -976 / -964 / -970 / (+) / 0.943 / acatTTGTctttg
P$TEIL.01 / Ethylen insensitive 3 like factors / -954 / -946 / -950 / (-) / 0.981 / aTGTAtctt
P$RAP22.01 / Light responsive element motif, not modulated by different light qualities / -948 / -938 / -943 / (-) / 0.938 / atATCTacatg
P$BLR.01 / Arabidopsis homeobox protein / -937 / -927 / -932 / (+) / 0.998 / aaaATTAtttt
P$SBF1.01 / GT-box elements / -905 / -889 / -897 / (+) / 0.913 / taaatagTTAAaatgga
P$GT1.01 / GT-box elements / -839 / -823 / -831 / (-) / 0.908 / gatgttGTTAatgtggg
P$WUS.01 / Arabidopsis homeobox protein / -836 / -826 / -831 / (-) / 1.000 / gttgtTAATgt
P$HAHB4.01 / Arabidopsis homeobox protein / -813 / -803 / -808 / (+) / 0.925 / cctatgATTAt
P$GATA.01 / Plant I-Box sites / -783 / -767 / -775 / (+) / 0.968 / ggtgaGATAagactttt
P$GAMYB.01 / MYB-like proteins / -701 / -685 / -693 / (+) / 0.922 / gtatagccGTTAtagcc
P$MSA.01 / M-phase-specific activator elements / -700 / -686 / -693 / (-) / 0.931 / gctatAACGgctata
P$HVMCB1.01 / MYB proteins with single DNA binding repeat / -681 / -665 / -673 / (-) / 0.946 / gatcatATCCatctcca
P$LFY.01 / LFY binding site / -636 / -624 / -630 / (+) / 0.939 / cTCCAgtggtccg
O$PTATA.02 / Plant TATA binding protein factor / -586 / -572 / -579 / (-) / 0.969 / aggcTATAtatacag
P$GT3A.01 / GT-box elements / -569 / -553 / -561 / (-) / 0.902 / gcaactGTTAcatgtgc
P$AS1_AS2_I.01 / MYB-like proteins / -567 / -551 / -559 / (-) / 1.000 / gcgcaaCTGTtacatgt
P$CAAT.01 / CCAAT binding factors / -546 / -538 / -542 / (+) / 0.986 / aaCCAAtgg
P$ID1.01 / ID domain factor / -541 / -529 / -535 / (+) / 0.925 / atggTTGTcgttg
P$GBF1.01 / Plant G-box/C-box bZIP proteins / -535 / -515 / -525 / (-) / 0.956 / cgtatcaaACGTgtcaacgac
P$MYCRS.01 / Myc-like basic helix-loop-helix binding factors / -534 / -516 / -525 / (-) / 0.946 / gtatcaaACGTgtcaacga
P$AS1_AS2_II.01 / AS1/AS2 repressor complex / -534 / -526 / -530 / (+) / 0.932 / tcgTTGAca
P$ABRE.01 / ABA response elements / -532 / -516 / -524 / (-) / 0.931 / tatCGCGtatcaaacgt
P$SBF1.01 / GT-box elements / -516 / -500 / -508 / (+) / 0.903 / cgcgataTTAAaaaatg
P$BLR.01 / Arabidopsis homeobox protein / -493 / -483 / -488 / (+) / 0.902 / gagATTAtttt
P$AS1_AS2_II.01 / AS1/AS2 repressor complex / -477 / -469 / -473 / (-) / 0.906 / tccTTGAtt
P$WUS.01 / Arabidopsis homeobox protein / -457 / -447 / -452 / (+) / 1.000 / attttTAATgg
P$HAHB4.01 / Arabidopsis homeobox protein / -448 / -438 / -443 / (+) / 0.914 / ggtataATTAa
P$HAHB4.01 / Arabidopsis homeobox protein / -418 / -408 / -413 / (+) / 0.923 / ttcattATTAt
P$HMG_IY.01 / High mobility group factors / -412 / -398 / -405 / (-) / 0.951 / aaatTATTtcataat
P$BLR.01 / Arabidopsis homeobox protein / -407 / -397 / -402 / (-) / 0.998 / taaATTAtttc
P$DOF1.01 / DNA binding with one finger (DOF) / -369 / -353 / -361 / (+) / 0.985 / aaggtcctAAAGacatt
P$SEF4.01 / Soybean embryo factor 4 / -348 / -338 / -343 / (-) / 0.998 / tgTTTTtatta
P$WUS.01 / Arabidopsis homeobox protein / -336 / -326 / -331 / (-) / 0.963 / tgattTAATct
P$WUS.01 / Arabidopsis homeobox protein / -317 / -307 / -312 / (-) / 1.000 / taattTAATgt
P$SBF1.01 / GT-box elements / -310 / -294 / -302 / (+) / 0.910 / attatgaTTAAatctgc
P$HAHB4.01 / Arabidopsis homeobox protein / -310 / -300 / -305 / (+) / 0.907 / attatgATTAa
P$WUS.01 / Arabidopsis homeobox protein / -306 / -296 / -301 / (-) / 0.963 / agattTAATca
P$MYBPH3.02 / MYB-like proteins / -298 / -282 / -290 / (-) / 0.929 / aatagtTAGTtggcaga
P$CAAT.01 / CCAAT binding factors / -282 / -274 / -278 / (-) / 0.993 / atCCAAtca
P$WUS.01 / Arabidopsis homeobox protein / -277 / -267 / -272 / (-) / 0.963 / tttctTAATcc
P$RAP22.01 / Light responsive element motif, not modulated by different light qualities / -237 / -227 / -232 / (-) / 0.909 / ggATCTacatg
P$AGP1.01 / Plant GATA-type zinc finger protein / -234 / -224 / -229 / (+) / 0.925 / gtaGATCcaaa
P$SUCROSE.01 / Sucrose box / -219 / -201 / -210 / (+) / 0.921 / atAAATcaaagtaattaaa
P$RY.01 / Legumin Box family / -212 / -186 / -199 / (-) / 0.917 / gactaatgCATGcactttaattacttt
P$SBF1.01 / GT-box elements / -212 / -196 / -204 / (+) / 0.905 / aaagtaaTTAAagtgca
P$DOF1.01 / DNA binding with one finger (DOF) / -211 / -195 / -203 / (+) / 0.985 / aagtaattAAAGtgcat
P$RY.01 / Legumin Box family / -205 / -179 / -192 / (+) / 0.940 / ttaaagtgCATGcattagtcaaagagg
P$WRKY.01 / W Box family / -195 / -179 / -187 / (-) / 0.982 / cctctTTGActaatgca
P$AS1_AS2_II.01 / AS1/AS2 repressor complex / -189 / -181 / -185 / (-) / 0.932 / tctTTGAct
P$WRKY.01 / W Box family / -179 / -163 / -171 / (-) / 0.949 / ttgatTTGAccaccacc
P$GAMYB.01 / MYB-like proteins / -139 / -123 / -131 / (-) / 0.945 / caaagttgGTTAgcatt
P$MYBC1.01 / MYB IIG-type binding sites / -127 / -113 / -120 / (+) / 0.929 / ctttgGTAGctccgg
P$EMBP1.01 / Plant G-box/C-box bZIP proteins / -85 / -65 / -75 / (-) / 1.000 / gtgaggacACGTggcatggtg
P$HBP1A.01 / Plant G-box/C-box bZIP proteins / -84 / -64 / -74 / (+) / 0.983 / accatgcCACGtgtcctcacc
P$OSIRO2.01 / Myc-like basic helix-loop-helix binding factors / -84 / -66 / -75 / (-) / 0.978 / tgaggaCACGtggcatggt
P$PIF3.01 / Myc-like basic helix-loop-helix binding factors / -83 / -65 / -74 / (+) / 0.911 / ccatgcCACGtgtcctcac
P$RITA1.01 / Opaque-2 like transcriptional activators / -83 / -67 / -75 / (-) / 0.977 / gaggacACGTggcatgg
P$ABRE.01 / ABA response elements / -83 / -67 / -75 / (+) / 0.954 / ccatgccACGTgtcctc
P$RITA1.01 / Opaque-2 like transcriptional activators / -82 / -66 / -74 / (+) / 0.960 / catgccACGTgtcctca
P$ABF1.01 / ABA response elements / -82 / -66 / -74 / (-) / 1.000 / tgaggACACgtggcatg
P$DPBF.01 / Dc3 promoter binding factors / -80 / -70 / -75 / (-) / 0.920 / gACACgtggca
P$ABI4.01 / Coupling element 1 binding factors / -63 / -51 / -57 / (+) / 0.905 / acccCACCggccc
P$ATTCP20.01 / DNA-binding proteins with the plant specific TCP-domain / -58 / -46 / -52 / (+) / 0.946 / accgGCCCaccac
P$GATA.01 / Plant I-Box sites / -31 / -15 / -23 / (-) / 0.940 / gaggaGATAatataagg
P$BPC.01 / GAGA elements / +3 / +30 / +15 / (+) / 1.000 / ttctagAGAGagacaattccctccc
P$BPC.01 / GAGA elements / +5 / +29 / +17 / (+) / 1.000 / ctagagAGAGacaattccctccctt
Supplementary Fig. 4 Putative transcription factor-binding sites and cis-acting elements in the 5′-upstream of the LEAFY COTYLEDON1-LIKE (HaL1L) genomic sequence of sunflower (Helianthus annuus L.). GenBank accession number AJ879074