Supplemental Table 1. Genes with 15 to 49 tags.

Cluster ID / Tags / Secreted / GO Molecular Function(s) / §Conserved Protein Domain(s)
¶Function by Homology / Cluster Method‡
8191 / 49 / Yes / n.d.¥ / Haem peroxidase, plant/fungal/bacterial (PF00141; IPR002016) / a
Contig1329 / 48 / Unknown / n.d. / ¶Lignin peroxidase CKG4 (M18743.1; E=0) / c
134565 / 48 / No / n.d. / Mitochondrial substrate carrier (PF00153; IPR001993) / a
6992 / 48 / No / n.d. / n.d. / a
3805 / 48 / Yes / n.d. / Glycoside hydrolase, family 28 (PF00295; IPR000743) / a
*3-948571-948742 / 46 / Unknown / n.d. / ¶Cellulase CBHI.2 (Z29653.1; E=2.9E-67) / b
Contig209 / 46 / Unknown / n.d. / ¶Lignin peroxidase CKG4 (M18743.1; E=0) / c
5517 / 46 / Yes / n.d. / Barwin-related endoglucanase (SSF50685; IPR009009) / a
5517 / 46 / Yes / n.d. / Rare lipoprotein A (PF03330; IPR005132) / a
3765 / 46 / Yes / n.d. / n.d. / a
2618 / 46 / No / n.d. / Ribosomal protein S27a (PF01599; IPR002906) / a
2618 / 46 / No / n.d. / Ubiquitin (PF00240; IPR000626) / a
*15-466493-466786 / 45 / Unknown / n.d. / ¶1,3-beta-glucosidase (AB234181.1; E=6.9E-148) / b
Contig353 / 45 / Unknown / n.d. / ¶endo-1,4-B-xylanase (AF301904.1; E=0) / c
130224 / 45 / No / n.d. / Bacterial rhodopsin (PF01036; IPR001425) / a
123909 / 45 / Yes / n.d. / Concanavalin A-like lectin/glucanase (SSF49899; IPR008985) / a
3622 / 45 / No / n.d. / n.d. / a
136318 / 44 / No / n.d. / Ribosomal protein L10E (PF00826; IPR001197) / a
29136 / 44 / No / n.d. / 1Ubiquitin (PF00240; IPR000626) / a
10849 / 44 / No / n.d. / Ribosomal protein L19e (PF01280; IPR000196) / a
10009 / 44 / No / n.d. / Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (PF00578; IPR000866) / a
*4-239896-240188 / 43 / Unknown / n.d. / n.d. / b
130095 / 43 / No / n.d. / S25 ribosomal protein (PF03297; IPR004977) / a
6482 / 43 / Yes / n.d. / n.d. / a
130118 / 42 / No / n.d. / Glutamine synthetase, catalytic region (PF00120; IPR008146) / a
127127 / 42 / No / n.d. / Alcohol dehydrogenase GroES-like (PF08240; IPR013154) / a
10767 / 42 / No / n.d. / Calcium-binding EF-hand (PF00036; IPR002048) / a
134615 / 41 / No / n.d. / Dienelactone hydrolase (PF01738; IPR002925) / a
132198 / 41 / No / n.d. / Glyceraldehyde 3-phosphate dehydrogenase (PF02800; IPR000173) / a
126415 / 41 / No / n.d. / Ubiquitin-conjugating enzyme, E2 (PF00179; IPR000608) / a
8407 / 41 / No / n.d. / General substrate transporter (PF00083; IPR005828) / a
Contig776 / 40 / Unknown / n.d. / n.d. / c
Contig1096 / 40 / Unknown / n.d. / ¶laminariniase (AB092837.2; E=0) / c
138739 / 40 / Yes / n.d. / n.d. / a
6357 / 40 / No / n.d. / 6-phosphogluconate dehydrogenase, C-terminal (PF00393; IPR006114) / a
3789 / 40 / Yes / n.d. / Extracellular membrane protein, 8-cysteine region, CFEM (PF05730; IPR008427) / a
3640 / 40 / No / n.d. / Major facilitator superfamily MFS_1 (PF07690; IPR011701) / a
134643 / 39 / No / n.d. / Ribosomal protein S27E (PF01667; IPR000592) / a
10872 / 39 / No / n.d. / RNA recognition motif, RNP-1 (PF00076; IPR000504) / a
363 / 39 / No / n.d. / Bacterial rhodopsin (PF01036; IPR001425) / a
Contig39 / 38 / Unknown / n.d. / ¶Cellobiohydrolase (S76141.1; E=1.6E-111) / c
132162 / 38 / No / n.d. / Lactate/malate dehydrogenase (PF02866; IPR001236) / a
11068 / 38 / Yes / n.d. / Domain of unknown function DUF1929 (PF09118; IPR015202) / a
11068 / 38 / Yes / n.d. / Glyoxal oxidase, N-terminal (PF07250; IPR009880) / a
9996 / 38 / No / n.d. / Ribosomal protein L2 (PF00181; IPR002171) / a
Contig741 / 37 / Unknown / n.d. / n.d. / c
Contig206 / 37 / Unknown / n.d. / n.d. / c
120998 / 37 / No / n.d. / Ribosomal protein S26E (PF01283; IPR000892) / a
*11-1214847-1215119 / 36 / Unknown / n.d. / ¶Elogation Factor EF1a (X94913.2; 8.9E-7) / b
129515 / 36 / No / n.d. / Aminotransferase, class I and II (PF00155; IPR004839) / a
137303 / 35 / No / n.d. / n.d. / a
134556 / 35 / Yes / n.d. / Cellulose-binding region, fungal (PF00734; IPR000254) / a
134556 / 35 / Yes / n.d. / Glycoside hydrolase, BNR repeat (PF02012; IPR002860) / a
129869 / 35 / No / n.d. / Methionine synthase, vitamin-B12 independent (PF01717; IPR002629) / a
7453 / 35 / Yes / n.d. / Calreticulin/calnexin (PF00262; IPR001580) / a
*14-757144-757379 / 34 / Unknown / cellulose binding (GO:0030248) / Fungal cellulose binding domain (PF00734) / b
Contig54 / 34 / Unknown / n.d. / ¶Acetylxylan esterase (DQ490499.1; E=7.0E-11) / c
138363 / 34 / Yes / n.d. / Peptidase S8 and S53, subtilisin, kexin, sedolisin (PF00082; IPR000209) / a
Contig681 / 33 / Unknown / n.d. / n.d. / c
137220 / 33 / Yes / n.d. / General substrate transporter (PF00083; IPR005828) / a
125300 / 33 / No / n.d. / Ribosomal protein L7Ae/L30e/S12e/Gadd45 (PF01248; IPR004038) / a
6513 / 33 / No / n.d. / Cytochrome c oxidase, subunit VIa (PF02046; IPR001349) / a
2995 / 33 / Yes / n.d. / Fungal hydrophobin (PF01185; IPR001338) / a
Contig667 / 32 / Unknown / n.d. / n.d. / c
Contig1301 / 32 / Unknown / n.d. / ¶HSP30 (DQ115395.1; E=1.1E-61) / c
138825 / 32 / No / n.d. / Iron-containing alcohol dehydrogenase (PF00465; IPR001670) / a
121564 / 32 / No / n.d. / Translationally controlled tumour-associated TCTP (PF00838; IPR001983) / a
Contig1125 / 31 / Unknown / n.d. / n.d. / c
139500 / 31 / No / n.d. / 14-3-3 protein (PF00244; IPR000308) / a
44135 / 31 / No / n.d. / Histone core (PF00125; IPR007125) / a
7029 / 31 / No / n.d. / n.d. / a
1622 / 31 / Yes / n.d. / n.d. / a
1619 / 31 / Yes / n.d. / n.d. / a
*9-1479131-1479289 / 30 / Unknown / n.d. / n.d. / b
*5-233202-233417 / 30 / Unknown / n.d. / n.d. / b
Contig1265 / 30 / Unknown / n.d. / n.d. / c
135734 / 30 / No / n.d. / Enolase (PF03952; IPR000941) / a
127959 / 30 / No / n.d. / Acyl-coA-binding protein, ACBP (PF00887; IPR000582) / a
125669 / 30 / No / n.d. / Glycoside hydrolase, family 10 (PF00331; IPR001000) / a
7571 / 30 / No / n.d. / Aldo/keto reductase (PF00248; IPR001395) / a
4924 / 30 / No / n.d. / Protein of unknown function DUF1692 (PF07970; IPR012936) / a
3405 / 30 / No / n.d. / n.d. / a
Contig522 / 29 / Unknown / n.d. / n.d. / c
124425 / 29 / No / n.d. / Sec61beta (PF03911; IPR005609) / a
10733 / 29 / No / n.d. / Ubiquitin (PF00240; IPR000626) / a
7874 / 29 / No / n.d. / GPR1/FUN34/yaaH (PF01184; IPR000791) / a
7266 / 29 / No / n.d. / Thioredoxin domain (PF00085; IPR013766) / a
7048 / 29 / Yes / n.d. / Glycoside hydrolase, family 12 (PF01670; IPR002594) / a
4943 / 29 / Yes / n.d. / n.d. / a
3699 / 29 / Yes / n.d. / n.d. / a
1675 / 29 / No / n.d. / Alcohol dehydrogenase GroES-like (PF08240; IPR013154) / a
1675 / 29 / No / n.d. / Alcohol dehydrogenase, zinc-binding (PF00107; IPR013149) / a
913 / 29 / No / n.d. / Ras (PF00071; IPR013753) / a
*12-118013-118262 / 28 / Unknown / n.d. / n.d. / b
Contig196 / 28 / Unknown / n.d. / n.d. / c
Contig1362 / 28 / Unknown / n.d. / ¶Acetylxylan esterase (DQ888226.1; E=3.5E-29) / c
136630 / 28 / Yes / n.d. / Glycoside hydrolase, family 25 (PF01183; IPR002053) / a
10833 / 28 / Yes / n.d. / n.d. / a
5013 / 28 / No / n.d. / Basic leucine zipper (PF07716; IPR011700) / a
3401 / 28 / No / n.d. / n.d. / a
2450 / 28 / No / n.d. / n.d. / a
*4-1828574-1828924 / 27 / Unknown / n.d. / n.d. / b
*1-1423319-1423941 / 27 / Unknown / n.d. / n.d. / b
Contig969 / 27 / Unknown / n.d. / n.d. / c
139619 / 27 / No / n.d. / Alcohol dehydrogenase GroES-like (PF08240; IPR013154) / a
139619 / 27 / No / n.d. / Alcohol dehydrogenase, zinc-binding (PF00107; IPR013149) / a
135376 / 27 / Yes / n.d. / Amino acid permease-associated region (PF00324; IPR004841) / a
134261 / 27 / No / n.d. / Transaldolase (PF00923; IPR001585) / a
130097 / 27 / No / n.d. / Ribosomal protein L6 (PF00347; IPR000702) / a
40899 / 27 / No / n.d. / Glycoside hydrolase, family 18, catalytic domain (PF00704; IPR001223) / a
10757 / 27 / No / n.d. / TGF-beta receptor, type I/II extracellular region (PF00854; IPR000109) / a
4984 / 27 / No / n.d. / Peptidyl-prolyl cis-trans isomerase, FKBP-type (PF00254; IPR001179) / a
2271 / 27 / Yes / n.d. / n.d. / a
987 / 27 / No / n.d. / O-methyltransferase, family 2 (PF00891; IPR001077) / a
*5-1064362-1064810 / 26 / Unknown / n.d. / n.d. / b
*11-1322077-1322211 / 26 / Unknown / n.d. / n.d. / b
139199 / 26 / No / n.d. / Ribosomal protein S3Ae (PF01015; IPR001593) / a
137271 / 26 / No / n.d. / Ribosomal protein L35Ae (PF01247; IPR001780) / a
130488 / 26 / No / n.d. / Glycoside hydrolase, family 47 (PF01532; IPR001382) / a
8996 / 26 / Yes / n.d. / Lipase, class 3 (PF01764; IPR002921) / a
420 / 26 / Yes / n.d. / Fungal hydrophobin (PF01185; IPR001338) / a
*8-932414-932647 / 25 / Unknown / n.d. / n.d. / b
*7-913756-914124 / 25 / Unknown / n.d. / n.d. / b
*16-506713-506894 / 25 / Unknown / n.d. / n.d. / b
Contig926 / 25 / Unknown / n.d. / ¶Endoglucanase (EGL12-F) (DQ206901.1; E=3.6E-4) / c
Contig368 / 25 / Unknown / n.d. / ¶Cellulase (CBH1.2) (Z29653.1; E=9.6E-95) / c
136994 / 25 / No / n.d. / Protein of unknown function DUF895, eukaryotic (PF05978; IPR010291) / a
133701 / 25 / Yes / n.d. / Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (PF00160; IPR002130) / a
10308 / 25 / No / n.d. / S-adenosyl-L-homocysteine hydrolase (PF05221; IPR000043) / a
10308 / 25 / No / n.d. / S-adenosyl-L-homocysteine hydrolase, NAD binding (PF00670; IPR015878) / a
*12-588529-588680 / 24 / Unknown / n.d. / n.d. / b
*1-1785920-1786564 / 24 / Unknown / n.d. / ¶Cellulose binding Lipase (EF514718.1; E=1.0E-10) / b
*11-77763-78162 / 24 / Unknown / n.d. / n.d. / b
136744 / 24 / No / n.d. / Cytochrome c oxidase, subunit VIb (PF02297; IPR003213) / a
136735 / 24 / No / n.d. / Ribosomal protein L15 (PF00256; IPR001196) / a
134768 / 24 / No / n.d. / Ribosomal protein L32e (PF01655; IPR001515) / a
125651 / 24 / No / n.d. / Cell division/GTP binding protein (PF00735; IPR000038) / a
44752 / 24 / No / n.d. / Heavy metal transport/detoxification protein (PF00403; IPR006121) / a
6254 / 24 / Yes / n.d. / n.d. / a
5826 / 24 / No / n.d. / Translation elongation factor EF1B, beta and delta chains, guanine nucleotide exchange (PF00736; IPR014038) / a
5297 / 24 / Yes / n.d. / Thaumatin, pathogenesis-related (PF00314; IPR001938) / a
5115 / 24 / Yes / n.d. / Cellulose-binding region, fungal (PF00734; IPR000254) / a
5115 / 24 / Yes / n.d. / Glycoside hydrolase, family 5 (PF00150; IPR001547) / a
455 / 24 / No / n.d. / Crotonase, core (PF00378; IPR001753) / a
*3-2135642-2135846 / 23 / Unknown / mating pheromone activity (GO:0000772) / Fungal mating-type pheromone (PF08015) / b
*16-483931-484073 / 23 / Unknown / n.d. / n.d. / b
*1-1124330-1124706 / 23 / Unknown / n.d. / n.d. / b
134311 / 23 / No / n.d. / Glycoside hydrolase, family 18, catalytic domain (PF00704; IPR001223) / a
43144 / 23 / No / n.d. / Peptidase G1, eqolisin (PF01828; IPR000250) / a
40896 / 23 / No / n.d. / Band 7 protein (PF01145; IPR001107) / a
3606 / 23 / No / n.d. / 2-nitropropane dioxygenase, NPD (PF03060; IPR004136) / a
1696 / 23 / Yes / n.d. / n.d. / a
*6-734462-734829 / 22 / Unknown / n.d. / n.d. / b
*3-1565529-1565927 / 22 / Unknown / n.d. / n.d. / b
*2-845367-846041 / 22 / Unknown / n.d. / n.d. / b
*2-1315719-1315831 / 22 / Unknown / n.d. / n.d. / b
*10-536995-537565 / 22 / Unknown / n.d. / n.d. / b
*10-363274-363397 / 22 / Unknown / n.d. / n.d. / b
Contig654 / 22 / Unknown / n.d. / n.d. / c
Contig362 / 22 / Unknown / n.d. / n.d. / c
Contig1000 / 22 / Unknown / n.d. / ¶Ribosomal RNA 18S (AF026593.1; E=0) / c
134076 / 22 / No / n.d. / ARF/SAR superfamily (PF00025; IPR006689) / a
131528 / 22 / No / n.d. / Ribosomal protein L18P/L5E (PF00861; IPR005484) / a
127647 / 22 / Yes / n.d. / Ribosomal protein 60S (PF00428; IPR001813) / a
126191 / 22 / No / n.d. / Carboxylesterase, type B (PF00135; IPR002018) / a
123178 / 22 / No / n.d. / General substrate transporter (PF00083; IPR005828) / a
43468 / 22 / No / n.d. / Succinate dehydrogenase, cytochrome b subunit (PF01127; IPR000701) / a
10819 / 22 / No / n.d. / Protein synthesis factor, GTP-binding (PF00009; IPR000795) / a
10819 / 22 / No / n.d. / Translation elongation factor EFG/EF2, C-terminal (PF00679; IPR000640) / a
10819 / 22 / No / n.d. / Translation elongation factor EFG/EF2, domain IV (PF03764; IPR005517) / a
10819 / 22 / No / n.d. / Translation elongation factor EFTu/EF1A, domain 2 (PF03144; IPR004161) / a
7054 / 22 / Yes / n.d. / n.d. / a
6035 / 22 / No / n.d. / Glycoside hydrolase, family 61 (PF03443; IPR005103) / a
4874 / 22 / No / n.d. / Oligopeptide transporter OPT superfamily (PF03169; IPR004813) / a
*2-1323496-1323836 / 21 / Unknown / n.d. / ¶14-3-3 protein (AY971673.1; E=3.7E-171) / b
*1-1468323-1468704 / 21 / Unknown / n.d. / n.d. / b
*11-160107-160519 / 21 / Unknown / n.d. / n.d. / b
Contig898 / 21 / Unknown / n.d. / ¶yFS275 protein (XM_002174376.1; E=1.5E-11) / c
Contig75 / 21 / Unknown / n.d. / n.d. / c
Contig738 / 21 / Unknown / n.d. / n.d. / c
Contig418 / 21 / Unknown / n.d. / n.d. / c
136196 / 21 / No / n.d. / Ribosomal protein S10 (PF00338; IPR001848) / a
135015 / 21 / No / n.d. / Ribosomal protein L13 (PF00572; IPR005822) / a
133952 / 21 / No / n.d. / Ribosomal protein S12/S23 (PF00164; IPR006032) / a
127246 / 21 / No / n.d. / Ribosomal protein L37ae (PF01780; IPR002674) / a
25929 / 21 / No / n.d. / Oligopeptide transporter OPT superfamily (PF03169; IPR004813) / a
10607 / 21 / No / n.d. / Lipolytic enzyme, G-D-S-L (PF00657; IPR001087) / a
6166 / 21 / Yes / n.d. / n.d. / a
*12-788452-788827 / 20 / Unknown / n.d. / n.d. / b
*1-144677-144911 / 20 / Unknown / n.d. / n.d. / b
Contig873 / 20 / Unknown / n.d. / ¶Laminarinase (AB092837.2; E=1.0E-121) / c