Solid Tumor Form for submission

IMPORTANT NOTES: The Author(s) is/are the sole responsible in case of copyright conflicts with previous sources of data; the Editor of the Atlas cannot check if figures or parts of texts are "copied-and-pasted" from other sources, including other databases; "copy-and-paste" data are not accepted in the Atlas.

Please, write directly your paper in this form, don't export it in another file, don't write the tags/beacons (e.g. AUTHORS … GENE_NAME … TOP_NOTE …) in lower case, do not create Word tables, such as here:

DATE / 2017-13
AUTHORS / Paddington Bear
CITATION / Bear P
AUTHORS_AFFILIATIONS / In the deep montains
e-Mail /

do not add semi colon or other: computers dislike any fantasy !!!

Tables: send them in separate files in Excel

Human genes must be written in cap. Please, use Hugo names (HGNC official nomenclature), with usual name in brackets if necessary: avoid the most confusing "p21", erk", or "mek"!

You will find official gene names either at https://www.genenames.org/ or, in the Atlas, at http://atlasgeneticsoncology.org/Genes/Geneliste.html ; http://www.genecards.org/Search/ section Aliases and Descriptions may also be very useful.

______

Author(s) ------>

AUTHORS (first name and surname)

DATE

CITATION (surname and initials first name)

AUTHORS_AFFILIATIONS / e-Mail

AUTHORS

UPDATE

CITATION

AUTHORS_AFFILIATIONS

International Classification of Diseases see: http:/atlasgeneticsoncology.org//Tumors/Solid_Nosology.html

ICD-O3_TOPO

ICD-O3_MORPH

Abstract /Keywords ------>

ABSTRACT

KEYWORDS

Identity ------>

NAME

ALIAS

NOTE

IMAGE on a separate file Drawings in powerpoint; Photographs in jpg or png or psd

IMAGE LEGEND

Classification ------>

NOTE

IMAGE on a separate file

IMAGE_LEGEND

CLASSIFICATION

Clinics and Pathology ------>

NOTE

Clinical Entity ------>

DISEASE

NOTE

PHENOTYPE_STEM_CELL_ORIGIN

EMBRYONIC_ORIGIN

ETIOLOGY

EPIDEMIOLOGY

CLINICS

CLINICS_IMAGE on a separate file

CLINICS_IMAGE_LEGEND

CYTOLOGY_IMAGE on a separate file

CYTOLOGY_IMAGE_LEGEND

CYTOLOGY

PATHOLOGY

PATHOLOGY_IMAGE on a separate file

PATHOLOGY_IMAGE_LEGEND

PATHOLOGY_IMAGE_2 on a separate file

PATHOLOGY_IMAGE_2_LEGEND

PATHOLOGY_IMAGE_3 on a separate file

PATHOLOGY_IMAGE_3_LEGEND

OTHER_FEATURES

OTHER_FEATURES_IMAGE on a separate file

OTHER_FEATURES_IMAGE_LEGEND

CYTOGENETICS

GENES

TREATMENT

EVOLUTION

PROGNOSIS

... again if necessary :

Clinical Entity ------>

DISEASE

NOTE

PHENOTYPE_STEM_CELL_ORIGIN

ETIOLOGY

EPIDEMIOLOGY

CLINICS

CLINICS_IMAGE on a separate file

CLINICS_TXT_IMAGE

CYTOLOGY_IMAGE on a separate file

CYTOLOGY_IMAGE_LEGEND

CYTOLOGY

PATHOLOGY

PATHOLOGY_IMAGE on a separate file

PATHOLOGY_IMAGE_LEGEND

PATHOLOGY_IMAGE_2 on a separate file

PATHOLOGY_IMAGE_2_LEGEND

PATHOLOGY_IMAGE_3 on a separate file

PATHOLOGY_IMAGE_3_LEGEND

CYTOGENETICS

GENES

TREATMENT

EVOLUTION

PROGNOSIS

... again if necessary :

Genetics ------>

NOTE

GENETICS_IMAGE on a separate file

GENETICS_IMAGE_LEGEND

GENETICS_IMAGE_2 on a separate file

GENETICS_IMAGE_2_LEGEND

GENETICS_IMAGE_3 on a separate file

GENETICS_IMAGE_3_LEGEND

Cytogenetics ------>

NOTE

CYTOGENETICS_MORPHOLOGICAL_IMAGE on a separate file

CYTOGENETICS_MORPHOLOGICAL_IMAGE_LEGEND

CYTOGENETICS_MORPHOLOGICAL

CYTOGENETICS_MOLECULAR

CYTOGENETICS_MOLECULAR_IMAGE on a separate file

CYTOGENETICS_MOLECULAR_IMAGE_LEGEND

PROBES

ADDITIONAL_ANOMALIES

VARIANTS

Genes involved and Proteins ------>

NOTE

COMPLEMENTATION_GROUPS

Gene ------>

GENE_NAME

LOCATION

NOTE

DNA_RNA_DESCRIPTION

IMAGE on a separate file

IMAGE_LEGEND

PROTEIN_DESCRIPTION

GERMINAL_MUTATIONS

SOMATIC_MUTATIONS

... again if necessary :

Gene ------>

GENE_NAME

LOCATION

NOTE

DNA_RNA_DESCRIPTION

IMAGE on a separate file

IMAGE_LEGEND

PROTEIN_DESCRIPTION

GERMINAL_MUTATIONS

SOMATIC_MUTATIONS

Result of the chromosomal anomaly ------>
Hybrid Gene ------>

NOTE

HYBRID_GENE_IMAGE on a separate file

HYBRID_GENE_IMAGE_LEGEND

DESCRIPTION

TRANSCRIPT

DETECTION_PROTOCOLE

Fusion Protein ------>

NOTE

FUSION_PROTEIN_IMAGE on a separate file

FUSION_PROTEIN_IMAGE_LEGEND

DESCRIPTION

EXPRESSION_LOCALISATION

ONCOGENESIS

To be noted (specific items) ------>

NOTE

IMAGE on a separate file

IMAGE_LEGEND

External links ------>

PROBES

OTHER DATABASES

NOTE

References (Use either: 1- PMID only, or: 2- fill the blocks, herein below
BEGIN_REF
TITLE
AUTHORS
REFERENCE
PMID
END_REF

...Copy and paste another block

BEGIN_REF
TITLE
AUTHORS
REFERENCE
PMID
END_REF

... and again ...

______

Instructions to Authors

References

- Literature references should be included in the text. In the text, they should appear as (first author et al., year). If there is only 2 authors: (first author and second authors, year); e.g. "recent data indicates that teddy bears are very affectionate persons (Paddington et al., 2011; Paddington and The Pooh, 2013)".

- References list at the end of the paper: references should be listed by alphabetical order:

* style (identical to PMID style):

Title.
Author1 AB, Author2 CD, Author3 E.
Journal Year; Vol: first page-last page.
PubMed number

Example:

BEGIN_REF

TITLE All teddy bears are gentle persons.

AUTHORS Paddington B, The Pooh W.

REFERENCE Int J Teddy Bears 2013; 12: 501-509.

PMID 1642873591

END_REF

Images

* Send optimum visual quality iconography; maximum width 710 pixels (25 cm) with a resolution of 72 pixels per inch or 28,4 pixels per cm).

* Images in PNG, JPG, or PSD for photographs (chromosomes, histo-pathology, radiographs, ...).

* Images in PPT for drawings.

* Lettering: please use preferably Arial font, size 12 to 20. Please, don't "lock" your drawing, we may need to enlarge small words or some tiny lines.

* The Editor keeps the right to process drawings for them to conform to our editorial policies.

Send your contribution to:

*AND* Carbon Copy AND* Carbon Copy (for safety)

______

PubMed Central

Once published in the Atlas, authors are encouraged to send their manuscript to PubMed Central http://www.ncbi.nlm.nih.gov/pmc/ with reference to the original paper in the Atlas in http://documents.irevues.inist.fr/handle/2042/15655

see examples:

PMID:25984243

PMID:24174994

PMID:22977462

______

Property/Copyright

As cards are to evolve with further improvements and updates from various authors/contributors, the property of the cards belongs to the editor, and modifications will be made without authorization from the previous contributor. Nonetheless, contributors keep the rights to use further the content of their papers published in the Atlas, provided that the source is cited.

Contributors are listed in an edit history manner e.g.

EWSR1 (Ewing sarcoma breakpoint region 1)

Written 1998-04 Francine Mugneret

Updated 2010-08 Jean-Loup Huret