Samuelian, Baldo, Pattison and Weber, 2007

Samuelian, Baldo, Pattison and Weber, 2007

Supplemental Table S1. List of all Rosaceae 270 RGA sequences analyzed for classification. From left to right columns are: Sequence code in alignment and Figure A, GenBank accession ID, Species, Cultivar (if known), Sequence ID used in original publication, Nearby mapped Resistance gene or QTL (linkage group in parenthesis), Within-group classification from this study, TIR/NTIR classification from this study, Original published classification, Original published reference.

Code / GenBank ID / Species / Cultivar / Published
Designation / Mapped near resistance (LG) / Within-Genus Group / Our classification / Published
Classification / Ref
1_Fc_CH15 / 48249470 / Fragaria chiloensis / CHILO-15 / Fragaria A / TIR II / TIR / [1]
2_Fc_CH7 / 48249468 / Fragaria chiloensis / CHILO-7 / Fragaria A / TIR II / TIR / [1]
1_Fv_VE10 / 48249466 / Fragaria vesca / VES-10 / TIR IV / TIR / [1]
1_Fa_CA7 / 48249448 / Fragaria x ananassa / Camarosa / CAM-7 / Fragaria A / TIR II / TIR / [1]
2_Fa_GA1 / 48249459 / Fragaria x ananassa / Gaviota / GAV-1 / Fragaria A / TIR II / TIR / [1]
3_Fa_GA10 / 48249462 / Fragaria x ananassa / Gaviota / GAV-10 / TIR VII / TIR / [1]
4_Fa_OS1 / 48249450 / Fragaria x ananassa / Oso Grande / OSO-1 / Fragaria C / TIR / TIR / [1]
5_Fa_OS10 / 48249454 / Fragaria x ananassa / Oso Grande / OSO-10 / Fragaria C / TIR / TIR / [1]
6_Fa_OS15 / 48249456 / Fragaria x ananassa / Oso Grande / OSO-15 / Fragaria C / TIR / TIR / [1]
7_Fa_OS2 / 48249452 / Fragaria x ananassa / Oso Grande / OSO-2 / Fragaria A / TIR II / TIR / [1]
8_Fa_SC10 / 48249446 / Fragaria x ananassa / Sweet Charlie / SCH-10 / Fragaria A / TIR II / TIR / [1]
9_Fa_SC9 / 48249444 / Fragaria x ananassa / Sweet Charlie / SCH-9 / Fragaria B / TIR II / TIR / [1]
10_Fa_U12 / 48249441 / Fragaria x ananassa / US-159 / US-12 / Fragaria B / TIR II / TIR / [1]
11_Fa_U5 / 48249435 / Fragaria x ananassa / US-159 / US-5 / Fragaria B / TIR II / TIR / [1]
12_Fa_U8 / 48249437 / Fragaria x ananassa / US-159 / US-8 / Fragaria A / TIR II / TIR / [1]
13_Fa_U9 / 48249439 / Fragaria x ananassa / US-159 / US-9 / Fragaria A / TIR II / TIR / [1]
1_Mb_II12 / 21745052 / Malus baccata / Borkh / II12 / Malus B / TIR X / TIR / [2]
2_Mb_II27 / 21745056 / Malus baccata / Borkh / II27 / Malus A / TIR / TIR / [2]
3_Mb_II35 / 21745058 / Malus baccata / Borkh / II35 / Malus B / TIR X / TIR / [2]
4_Mb_II45 / 21745060 / Malus baccata / Borkh / II45 / Malus B / TIR X / TIR / [2]
5_Mb_II46 / 21745062 / Malus baccata / Borkh / II46 / Malus B / TIR X / TIR / [2]
6_Mb_R4 / 37574595 / Malus baccata / R4 / Bacterial Spot / Malus B / TIR X / [3]
7_Mb_R4 / 37574599 / Malus baccata / R4 / Bacterial Spot / Malus B / TIR X / [3]
8_Mb_R7 / 37574597 / Malus baccata / R7 / Malus C / TIR X / [4]
1_Mp_I1 / 21745021 / Malus prunifolia / Borkh / I1 / Malus B / TIR X / TIR / [2]
2_Mp_I10 / 21745026 / Malus prunifolia / Borkh / I10 / Malus B / TIR X / TIR / [2]
3_Mp_I14 / 21745028 / Malus prunifolia / Borkh / I14 / Malus C / TIR X / TIR / [2]
4_Mp_I21 / 21745030 / Malus prunifolia / Borkh / I21 / Malus C / TIR X / TIR / [2]
5_Mp_I26 / 21745032 / Malus prunifolia / Borkh / I26 / Malus B / TIR X / TIR / [2]
6_Mp_I31 / 21745034 / Malus prunifolia / Borkh / I31 / Malus A / TIR / TIR / [2]
7_Mp_I36 / 21745036 / Malus prunifolia / Borkh / I36 / Malus B / TIR X / TIR / [2]
8_Mp_I4 / 21745023 / Malus prunifolia / Borkh / I4 / Malus E / TIR XI / TIR / [2]
9_Mp_I44 / 21745038 / Malus prunifolia / Borkh / I44 / Malus A / TIR / TIR / [2]
10_Mp_I45 / 21745040 / Malus prunifolia / Borkh / I45 / Malus A / TIR / TIR / [2]
11_Mp_I50 / 21745042 / Malus prunifolia / Borkh / I50 / Malus A / TIR / TIR / [2]
12_Mp_II24 / 21745054 / Malus prunifolia / Borkh / II24 / Non-TIR IX / Non-TIR / [2]
13_Mp_III2 / 21745046 / Malus prunifolia / Borkh / III21 / TIR IV / TIR / [2]
14_Mp_III3 / 21745048 / Malus prunifolia / Borkh / III33 / Malus D / TIR X / TIR / [2]
15_Mp_III4 / 21745044 / Malus prunifolia / Borkh / III4 / TIR X / TIR / [2]
16_Mp_III4 / 21745050 / Malus prunifolia / Borkh / III44 / Malus A / TIR / TIR / [2]
1_Md_2-030 / 86438846 / Malus x domestica / Florina / Md49N23_SdRGH2.030 / Malus G / Non-TIR III / CC-NBS-LRR / [5]
2_Md_3-050 / 86438847 / Malus x domestica / Florina / Md49N23_SdRGH3.050 / Malus G / Non-TIR III / CC-NBS-LRR / [5]
3_Md_1-070 / 86438848 / Malus x domestica / Florina / Md49N23_SdRGH1.070 / Malus G / Non-TIR III / CC-NBS-LRR / [5]
4_Md_AR2 / 34485832 / Malus x domestica / Freedom / ARGH40 / Malus B / TIR X / TIR / [6]
5_Md_AR4 / 34485804 / Malus x domestica / Freedom / ARGH39 / Malus E / TIR XI / TIR / [6]
6_Md_AR6 / 34485836 / Malus x domestica / Freedom / ARGH26 / Malus B / TIR X / TIR / [6]
7_Md_AR8 / 34485834 / Malus x domestica / Freedom / ARGH25 / Malus B / TIR X / TIR / [6]
8_Md_AR9 / 34485840 / Malus x domestica / Freedom / ARGH20 / Apple Scab (D11) / Malus F / Non-TIR I / Non-TIR / [6]
9_Md_AR11 / 34485838 / Malus x domestica / Freedom / ARGH13 / Malus F / Non-TIR I / Non-TIR / [6]
10_Md_AR12 / 34485808 / Malus x domestica / Freedom / ARGH6 / TIR III / TIR / [6]
11_Md_AR13 / 34485856 / Malus x domestica / Freedom / ARGH30 / Non-TIR / Non-TIR / [6]
12_Md_AR16 / 34485854 / Malus x domestica / Freedom / ARGH35 / Malus I / Non-TIR / Non-TIR / [6]
13_Md_AR17 / 34485844 / Malus x domestica / Freedom / ARGH32 / Malus H / Non-TIR V / Non-TIR / [6]
14_Md_AR20 / 34485824 / Malus x domestica / Freedom / ARGH37 / Malus C / TIR X / TIR / [6]
15_Md_AR21 / 34485828 / Malus x domestica / Freedom / ARGH23 / Malus D / TIR X / TIR / [6]
16_Md_AR22 / 34485850 / Malus x domestica / Freedom / ARGH21 / Malus H / Non-TIR V / Non-TIR / [6]
17_Md_AR23 / 34485846 / Malus x domestica / Freedom / ARGH42 / Malus H / Non-TIR V / Non-TIR / [6]
18_Md_AR25 / 34485812 / Malus x domestica / Freedom / ARGH8 / TIR III / TIR / [6]
19_Md_AR26 / 34485814 / Malus x domestica / Freedom / ARGH12 / TIR IV / TIR / [6]
20_Md_AR30 / 34485818 / Malus x domestica / Freedom / ARGH17 / Apple Scab, Vr2 (D2) / Malus C / TIR X / TIR / [6]
21_Md_AR31 / 34485826 / Malus x domestica / Freedom / ARGH16 / Malus D / TIR X / TIR / [6]
22_Md_AR32 / 34485816 / Malus x domestica / Freedom / ARGH2 / Malus A / TIR / TIR / [6]
23_Md_AR34 / 34485830 / Malus x domestica / Freedom / ARGH46 / Vbj, Vr (D2) / Malus B / TIR X / TIR / [6]
24_Md_AR35 / 34485820 / Malus x domestica / Freedom / ARGH9 / Malus C / TIR X / TIR / [6]
25_Md_AR37 / 34485852 / Malus x domestica / Freedom / ARGH34 / Apple Scab, Vf1 (D1) / Malus I / Non-TIR / Non-TIR / [6]
26_Md_AR39 / 34485848 / Malus x domestica / Freedom / ARGH31 / Malus H / Non-TIR V / Non-TIR / [6]
27_Md_AR40 / 34485810 / Malus x domestica / Freedom / ARGH11 / TIR III / TIR / [6]
28_Md_AR41 / 34485842 / Malus x domestica / Freedom / ARGH4 / Non-TIR / Non-TIR / [6]
29_Md_AR42 / 34485822 / Malus x domestica / Freedom / ARGH22 / Non-TIR VIII / TIR / [6]
30_Md_AR46 / 34485806 / Malus x domestica / Freedom / ARGH41 / Malus E / TIR XI / TIR / [6]
31_Md_FA10 / 21744987 / Malus x domestica / Fuji / FRGA-A10 / Malus A / TIR / TIR / [2]
32_Md_FA12 / 21744989 / Malus x domestica / Fuji / FRGA-A12 / Malus B / TIR X / TIR / [2]
33_Md_FA28 / 21744991 / Malus x domestica / Fuji / FRGA-A28 / Malus B / TIR X / TIR / [2]
34_Md_FA3 / 21744980 / Malus x domestica / Fuji / FRGA-A3 / Malus A / TIR / TIR / [2]
35_Md_FA30 / 21744993 / Malus x domestica / Fuji / FRGA-A30 / Malus F / Non-TIR I / Non-TIR / [2]
36_Md_FA34 / 21744995 / Malus x domestica / Fuji / FRGA-A34 / Malus A / TIR / TIR / [2]
37_Md_FA35 / 21744997 / Malus x domestica / Fuji / FRGA-A35 / Malus A / TIR / TIR / [2]
38_Md_FA4 / 21435812 / Malus x domestica / Fuji / FRGA-A4 / Malus C / TIR X / TIR / [2]
39_Md_FA45 / 21744999 / Malus x domestica / Fuji / FRGA-A45 / Malus A / TIR / TIR / [2]
40_Md_FA5 / 21744983 / Malus x domestica / Fuji / FRGA-A5 / Malus C / TIR X / TIR / [2]
41_Md_FA7 / 21744985 / Malus x domestica / Fuji / FRGA-A7 / Malus B / TIR X / TIR / [2]
42_Md_R11 / 37549278 / Malus x domestica / Fuji / R11 / Malus B / TIR X / [2]
43_Md_HH10 / 21745003 / Malus x domestica / Hong-ok / HRGA-H10 / Malus B / TIR X / TIR / [2]
44_Md_HH12 / 21745005 / Malus x domestica / Hong-ok / HRGA-H12 / Malus E / TIR XI / TIR / [2]
45_Md_HH32 / 21745007 / Malus x domestica / Hong-ok / HRGA-H32 / Malus B / TIR X / TIR / [2]
46_Md_HH33 / 21745009 / Malus x domestica / Hong-ok / HRGA-H33 / Malus A / TIR / TIR / [2]
47_Md_HH4 / 21745001 / Malus x domestica / Hong-ok / HRGA-H4 / Malus A / TIR / TIR / [2]
48_Md_HH40 / 21745011 / Malus x domestica / Hong-ok / HRGA-H40 / Non-TIR X / Non-TIR / [2]
49_Md_HH45 / 21745013 / Malus x domestica / Hong-ok / HRGA-H45 / TIR / TIR / [2]
50_Md_HH53 / 21745015 / Malus x domestica / Hong-ok / HRGA-H53 / Malus D / TIR X / TIR / [2]
51_Md_HH57 / 21745017 / Malus x domestica / Hong-ok / HRGA-H57 / Malus B / TIR X / TIR / [2]
52_Md_HH62 / 21745019 / Malus x domestica / Hong-ok / HRGA-H62 / Malus A / TIR / TIR / [2]
1_Pa_Cd134 / 84142754 / Prunus armeniaca / Stark Early Orange / Cd134 / Sharka (G1) / Prunus A / TIR IX / TIR / [7]
2_Pa_Cd76 / 84142749 / Prunus armeniaca / Stark Early Orange / Cd76 / Sharka (G1) / Prunus A / TIR IX / TIR / [7]
3_Pa_RGA1 / Prunus armeniaca / RGA1 / Prunus B / TIR X / TIR / [8]
4_Pa_RGA2 / Prunus armeniaca / RGA2 / TIR XI / TIR / [8]
5_Pa_RGA3 / Prunus armeniaca / RGA3 / TIR VIII / TIR / [8]
6_Pa_RGA4 / Prunus armeniaca / RGA4 / TIR / TIR / [8]
7_Pa_RGA5 / Prunus armeniaca / RGA5 / TIR / TIR / [8]
8_Pa_RGA6 / Prunus armeniaca / RGA6 / TIR III / TIR / [8]
1_Pp_A12 / 84142767 / Prunus persica / Nemared / A12 / Sharka / Prunus B / TIR X / TIR / [7]
2_Pp_D12 / 84142771 / Prunus persica / Nemared / D12 / Powdery Mildew, Sharka (G1, G6, G7) / TIR IX / TIR / [7]
3_Pp_D9 / 84142774 / Prunus persica / Nemared / D9 / Nematode (G2) / Non-TIR VI / Non-TIR / [7]
4_Pp_E5 / 84142772 / Prunus persica / Nemared / E5 / Sharka (G7) / TIR VI / TIR / [7]
5_Pp_F4 / 84142773 / Prunus persica / Nemared / F4 / Nematode (G7) / Non-TIR II / Non-TIR / [7]
6_Pp / 47059739 / Prunus persica / Okubo / Non-TIR VI / [9]
1_Pc_02 / 40644893 / Pyrus communis / Old Home / RGA02 / Pyrus C / Non-TIR / [10]
2_Pc_03 / 40644895 / Pyrus communis / Old Home / RGA03 / Pyrus B / Non-TIR V / [10]
3_Pc_04 / 40644897 / Pyrus communis / Old Home / RGA04 / Non-TIR / [10]
4_Pc_06 / 40644864 / Pyrus communis / Old Home / RGA06 / Non-TIR / [10]
5_Pc_07 / 40644866 / Pyrus communis / Old Home / RGA07 / TIR III / [10]
6_Pc_09 / 40644870 / Pyrus communis / Seckel / RGA09 / Pyrus A / TIR X / [10]
7_Pc_10 / 40644872 / Pyrus communis / Seckel / RGA10 / Pyrus A / TIR X / [10]
8_Pc_13 / 40644878 / Pyrus communis / Seckel / RGA13 / Pyrus B / Non-TIR V / [10]
9_Pc_14 / 40644880 / Pyrus communis / Seckel / RGA14 / Pyrus C / Non-TIR / [10]
10_Pc_15 / 40644882 / Pyrus communis / Seckel / RGA15 / TIR IV / [10]
11_Pc_16 / 40644884 / Pyrus communis / Seckel / RGA16 / Pyrus A / TIR X / [10]
1_Rh_10g1- / 73658552 / Rosa hybrid cultivar / 88/124-46 / 10g1-F8 / Non-TIR X / LZ / [11]
2_Rh_11a-G / 73658576 / Rosa hybrid cultivar / 88/124-46 / 11a-G11 / Non-TIR IV / LZ / [11]
3_Rh_11a-G / 73658570 / Rosa hybrid cultivar / 88/124-46 / 11a-G16 / Rosa K / Non-TIR I / LZ / [11]
4_Rh_11a-G / 73658572 / Rosa hybrid cultivar / 88/124-46 / 11a-G8 / Rosa O / Non-TIR VII / LZ / [11]
5_Rh_11a-H / 73658562 / Rosa hybrid cultivar / 88/124-46 / 11a-H10 / Non-TIR / LZ / [11]
6_Rh_11b-L / 73658574 / Rosa hybrid cultivar / 88/124-46 / 11b-L4 / Non-TIR / LZ / [11]
7_Rh_11g1- / 73658558 / Rosa hybrid cultivar / 88/124-46 / 11g1-I16 / Non-TIR X / LZ / [11]
8_Rh_12g1- / 73658566 / Rosa hybrid cultivar / 88/124-46 / 12g1-G10 / Non-TIR III / LZ / [11]
9_Rh_12g1- / 73658568 / Rosa hybrid cultivar / 88/124-46 / 12g1-K16 / Rosa K / Non-TIR I / LZ / [11]
10_Rh_12g2 / 73658564 / Rosa hybrid cultivar / 88/124-46 / 12g2-C8 / Non-TIR II / LZ / [11]
11_Rh_12g2 / 73658554 / Rosa hybrid cultivar / 88/124-46 / 12g2-E8 / Non-TIR X / LZ / [11]
12_Rh_1g1- / 73658522 / Rosa hybrid cultivar / 88/124-46 / 1g1-E24 / TIR / TIR / [11]
13_Rh_1g2- / 73658500 / Rosa hybrid cultivar / 88/124-46 / 1g2-C6 / TIR X / TIR / [11]
14_Rh_1g2- / 73658502 / Rosa hybrid cultivar / 88/124-46 / 1g2-D10 / TIR I / TIR / [11]
15_Rh_1g2- / 73658512 / Rosa hybrid cultivar / 88/124-46 / 1g2-J13 / TIR XI / TIR / [11]
16_Rh_1g2- / 73658516 / Rosa hybrid cultivar / 88/124-46 / 1g2-M14 / Rosa J / TIR / TIR / [11]
17_Rh_3a-A / 73658546 / Rosa hybrid cultivar / 88/124-46 / 3a-A7 / Rosa E / TIR V / TIR / [11]
18_Rh_3a-C / 73658510 / Rosa hybrid cultivar / 88/124-46 / 3a-C12 / TIR XI / TIR / [11]
19_Rh_3a-C / 73658514 / Rosa hybrid cultivar / 88/124-46 / 3a-C2 / TIR IX / TIR / [11]
20_Rh_3a-C / 73658506 / Rosa hybrid cultivar / 88/124-46 / 3a-C8 / Rosa B / TIR / TIR / [11]
21_Rh_3b-L / 73658540 / Rosa hybrid cultivar / 88/124-46 / 3b-L16 / Rosa G / TIR / TIR / [11]
22_Rh_3g1- / 73658518 / Rosa hybrid cultivar / 88/124-46 / 3g1-E4 / Rosa I / TIR / TIR / [11]
23_Rh_3g1- / 73658498 / Rosa hybrid cultivar / 88/124-46 / 3g1-M19 / Rosa A / TIR / TIR / [11]
24_Rh_3g2- / 73658532 / Rosa hybrid cultivar / 88/124-46 / 3g2-E4 / TIR / TIR / [11]
25_Rh_3g2- / 73658536 / Rosa hybrid cultivar / 88/124-46 / 3g2-I18 / Rosa F / TIR / TIR / [11]
26_Rh_3g2- / 73658548 / Rosa hybrid cultivar / 88/124-46 / 3g2-K19 / Rosa G / TIR / TIR / [11]
27_Rh_3g2- / 73658550 / Rosa hybrid cultivar / 88/124-46 / 3g2-N10 / Rosa F / TIR / TIR / [11]
28_Rh_3g2- / 73658508 / Rosa hybrid cultivar / 88/124-46 / 3g2-O10 / TIR XI / TIR / [11]
29_Rh_4g1- / 73658520 / Rosa hybrid cultivar / 88/124-46 / 4g1-J7 / Rosa I / TIR / TIR / [11]
30_Rh_4g2- / 73658504 / Rosa hybrid cultivar / 88/124-46 / 4g2-I14 / TIR / TIR / [11]
31_Rh_D1-B / 73658530 / Rosa hybrid cultivar / 88/124-46 / D1-B1 / TIR / TIR / [11]
32_Rh_D1-C / 73658544 / Rosa hybrid cultivar / 88/124-46 / D1-C14 / TIR VI / TIR / [11]
33_Rh_D1-D / 73658534 / Rosa hybrid cultivar / 88/124-46 / D1-D1 / Powdery Mildew (4) / TIR VIII / TIR / [11]
34_Rh_D1-H / 73658560 / Rosa hybrid cultivar / 88/124-46 / D1-H6 / Non-TIR VI / LZ / [11]
35_Rh_D1-K / 73658556 / Rosa hybrid cultivar / 88/124-46 / D1-K15 / Non-TIR XI / LZ / [11]
36_Rh_D1-M / 73658538 / Rosa hybrid cultivar / 88/124-46 / D1-M1 / TIR VII / TIR / [11]
37_Rh_D1-N / 73658542 / Rosa hybrid cultivar / 88/124-46 / D1-N13 / Rosa C / TIR II / TIR / [11]
38_Rh_D1-P / 73658528 / Rosa hybrid cultivar / 88/124-46 / D1-P13 / Rosa H / TIR / TIR / [11]
39_Rh_D2-D / 73658524 / Rosa hybrid cultivar / 88/124-46 / D2-D14 / Rosa H / TIR / TIR / [11]
40_Rh_D2-K / 73658526 / Rosa hybrid cultivar / 88/124-46 / D2-K16 / TIR / TIR / [11]
1_Rr / 46948246 / Rosa roxburghii / W1-2 / Rosa J / TIR / [12]
2_Rr / 46948254 / Rosa roxburghii / W1-2 / Rosa B / TIR / [12]
3_Rr / 46948250 / Rosa roxburghii / W1-2 / Rosa C / TIR II / [12]
4_Rr / 46948260 / Rosa roxburghii / W1-2 / Rosa C / TIR II / [12]
5_Rr / 46948248 / Rosa roxburghii / W1-2 / Rosa J / TIR / [12]
6_Rr / 46948244 / Rosa roxburghii / W1-2 / Powdery Mildew (22) / Rosa J / TIR / [12]
7_Rr / 46948240 / Rosa roxburghii / W1-2 / Rosa J / TIR / [12]
8_Rr / 46948242 / Rosa roxburghii / W1-2 / Rosa J / TIR / [12]
9_Rr / 46948258 / Rosa roxburghii / W1-2 / Rosa B / TIR / [12]
10_Rr / 46948256 / Rosa roxburghii / W1-2 / TIR XI / [12]
11_Rr_3 / 47499329 / Rosa roxburghii / W1-2 / RGA 3 / Rosa N / Non-TIR / Non-TIR / [12]
12_Rr_4 / 47499311 / Rosa roxburghii / W1-2 / RGA 4 / Powdery Mildew / Rosa M / Non-TIR / Non-TIR / [12]
13_Rr_5 / 47499365 / Rosa roxburghii / W1-2 / RGA 5 / Rosa E / TIR V / TIR / [12]
14_Rr_6 / 47499331 / Rosa roxburghii / W1-2 / RGA 6 / Rosa N / Non-TIR / Non-TIR / [12]
15_Rr_7 / 47499337 / Rosa roxburghii / W1-2 / RGA 7 / Powdery Mildew / Rosa N / Non-TIR / Non-TIR / [12]
16_Rr_8 / 47499315 / Rosa roxburghii / W1-2 / RGA 8 / Rosa M / Non-TIR / Non-TIR / [12]
17_Rr_10 / 47499301 / Rosa roxburghii / W1-2 / RGA 10 / Rosa O / Non-TIR VII / Non-TIR / [12]
18_Rr_11 / 47499317 / Rosa roxburghii / W1-2 / RGA 11 / Rosa M / Non-TIR / Non-TIR / [12]
19_Rr_12 / 47499305 / Rosa roxburghii / W1-2 / RGA 12 / Rosa O / Non-TIR VII / Non-TIR / [12]
20_Rr_13 / 47499325 / Rosa roxburghii / W1-2 / RGA 13 / Rosa L / Non-TIR / Non-TIR / [12]
21_Rr_14 / 47499319 / Rosa roxburghii / W1-2 / RGA 14 / Rosa M / Non-TIR / Non-TIR / [12]
22_Rr_15 / 47499309 / Rosa roxburghii / W1-2 / RGA 15 / Non-TIR / Non-TIR / [12]
23_Rr_18 / 47499313 / Rosa roxburghii / W1-2 / RGA 18 / Rosa M / Non-TIR / Non-TIR / [12]
24_Rr_19 / 47499333 / Rosa roxburghii / W1-2 / RGA 19 / Rosa N / Non-TIR / Non-TIR / [12]
25_Rr_20 / 47499327 / Rosa roxburghii / W1-2 / RGA 20 / Rosa L / Non-TIR / Non-TIR / [12]
26_Rr_21 / 47499343 / Rosa roxburghii / W1-2 / RGA 21 / Rosa N / Non-TIR / Non-TIR / [12]
27_Rr_23 / 47499335 / Rosa roxburghii / W1-2 / RGA 23 / Rosa N / Non-TIR / Non-TIR / [12]
28_Rr_24 / 47499323 / Rosa roxburghii / W1-2 / RGA 24 / Rosa M / Non-TIR / Non-TIR / [12]
29_Rr_25 / 47499345 / Rosa roxburghii / W1-2 / RGA 25 / Rosa E / TIR V / TIR / [12]
30_Rr_26 / 47499347 / Rosa roxburghii / W1-2 / RGA 26 / Rosa B / TIR / TIR / [12]
31_Rr_27 / 47499353 / Rosa roxburghii / W1-2 / RGA 27 / Rosa D / TIR II / TIR / [12]
32_Rr_28 / 47499359 / Rosa roxburghii / W1-2 / RGA 28 / Rosa A / TIR / TIR / [12]
33_Rr_29 / 47499361 / Rosa roxburghii / W1-2 / RGA 29 / Rosa A / TIR / TIR / [12]
34_Rr_30 / 47499363 / Rosa roxburghii / W1-2 / RGA 30 / Rosa A / TIR / TIR / [12]
35_Rr_31 / 47499357 / Rosa roxburghii / W1-2 / RGA 31 / Rosa D / TIR II / TIR / [12]
36_Rr_32 / 47499349 / Rosa roxburghii / W1-2 / RGA 32 / Rosa B / TIR / TIR / [12]
37_Rr_33 / 47499351 / Rosa roxburghii / W1-2 / RGA 33 / Rosa B / TIR / TIR / [12]
38_Rr_34 / 47499355 / Rosa roxburghii / W1-2 / RGA 34 / Rosa E / TIR V / TIR / [12]
1_Ri_14-1 / BV681287 / Rubus idaeus / Latham / N14.1 / Rubus K / Non-TIR XI
2_Ri_14-2 / BV681288 / Rubus idaeus / Latham / N14.2 / Rubus K / Non-TIR XI
3_Ri_14-20 / BV681289 / Rubus idaeus / Latham / N14.20 / Rubus K / Non-TIR XI
4_Ri_14-23 / BV681290 / Rubus idaeus / Latham / N14.23 / Rubus K / Non-TIR XI
5_Ri_14-30 / BV681291 / Rubus idaeus / Latham / N14.30 / Rubus K / Non-TIR XI
6_Ri_14-31 / BV681292 / Rubus idaeus / Latham / N14.31 / Rubus K / Non-TIR XI
7_Ri_14-33 / BV681293 / Rubus idaeus / Latham / N14.33 / Rubus K / Non-TIR XI
8_Ri_14-35 / BV681294 / Rubus idaeus / Latham / N14.35 / Non-TIR XI
9_Ri_14-36 / BV681295 / Rubus idaeus / Latham / N14.36 / Phytophthora Root Rot (1) / Rubus G / Non-TIR
10_Ri_14-5 / BV681296 / Rubus idaeus / Latham / N14.52 / Rubus K / Non-TIR XI
11_Ri_16-2 / BV681297 / Rubus idaeus / Latham / N16.2 / Rubus H / Non-TIR
12_Ri_19-2 / BV681298 / Rubus idaeus / Latham / N19.2 / Non-TIR IV
13_Ri_19-2 / BV681302 / Rubus idaeus / Latham / N19.22 / Non-TIR
14_Ri_19-3 / BV681299 / Rubus idaeus / Latham / N19.3_25 / Non-TIR IX
15_Ri_19-7 / BV681300 / Rubus idaeus / Latham / N19.7 / Rubus J / Non-TIR VIII
16_Ri_19-9 / BV681301 / Rubus idaeus / Latham / N19.9 / TIR X
17_Ri_23-1 / BV681303 / Rubus idaeus / Latham / N23.1 / Rubus D / TIR III
18_Ri_23-6 / BV681304 / Rubus idaeus / Latham / N23.6 / Rubus B / TIR
19_Ri_23-9 / BV681305 / Rubus idaeus / Latham / N23.9 / Rubus F / TIR XI
20_Ri_4-1 / BV681230 / Rubus idaeus / Latham / N4.1 / Rubus D / TIR III
21_Ri_4-10 / BV681239 / Rubus idaeus / Latham / N4.10 / Rubus E / TIR XI
22_Ri_4-11 / BV681240 / Rubus idaeus / Latham / N4.11 / Rubus A / TIR
23_Ri_4-12 / BV681241 / Rubus idaeus / Latham / N4.12 / Rubus A / TIR
24_Ri_4-13 / BV681242 / Rubus idaeus / Latham / N4.13 / Rubus H / Non-TIR
25_Ri_4-14 / BV681243 / Rubus idaeus / Latham / N4.14 / Rubus K / Non-TIR XI
26_Ri_4-15 / BV681244 / Rubus idaeus / Latham / N4.15 / Rubus G / Non-TIR
27_Ri_4-16 / BV681245 / Rubus idaeus / Latham / N4.16 / Rubus H / Non-TIR
28_Ri_4-17 / BV681246 / Rubus idaeus / Latham / N4.17 / Rubus C / TIR
29_Ri_4-18 / BV681247 / Rubus idaeus / Latham / N4.18 / Rubus F / TIR XI
30_Ri_4-19 / BV681248 / Rubus idaeus / Latham / N4.19 / Non-TIR II
31_Ri_4-2 / BV681231 / Rubus idaeus / Latham / N4.2 / Rubus A / TIR
32_Ri_4-20 / BV681249 / Rubus idaeus / Latham / N4.20 / TIR
33_Ri_4-22 / BV681250 / Rubus idaeus / Latham / N4.22 / TIR
34_Ri_4-23 / BV681251 / Rubus idaeus / Latham / N4.23 / Rubus D / TIR III
35_Ri_4-24 / BV681252 / Rubus idaeus / Latham / N4.24 / Rubus A / TIR
36_Ri_4-25 / BV681253 / Rubus idaeus / Latham / N4.25_30 / Rubus F / TIR XI
37_Ri_4-26 / BV681254 / Rubus idaeus / Latham / N4.26 / Rubus A / TIR
38_Ri_4-28 / BV681255 / Rubus idaeus / Latham / N4.28 / Rubus A / TIR
39_Ri_4-29 / BV681256 / Rubus idaeus / Latham / N4.29 / TIR I
40_Ri_4-3 / BV681232 / Rubus idaeus / Latham / N4.3 / Rubus A / TIR
41_Ri_4-33 / BV681257 / Rubus idaeus / Latham / N4.33 / Rubus A / TIR
42_Ri_4-34 / BV681258 / Rubus idaeus / Latham / N4.34 / Rubus A / TIR
43_Ri_4-36 / BV681259 / Rubus idaeus / Latham / N4.36 / Rubus A / TIR
44_Ri_4-37 / BV681260 / Rubus idaeus / Latham / N4.37 / Rubus E / TIR XI
45_Ri_4-4 / BV681233 / Rubus idaeus / Latham / N4.4 / Rubus B / TIR
46_Ri_4-40 / BV681261 / Rubus idaeus / Latham / N4.40 / Rubus A / TIR
47_Ri_4-41 / BV681262 / Rubus idaeus / Latham / N4.41 / Rubus A / TIR
48_Ri_4-5 / BV681234 / Rubus idaeus / Latham / N4.5 / Rubus A / TIR
49_Ri_4-53 / BV681263 / Rubus idaeus / Latham / N4.53 / Rubus C / TIR
50_Ri_4-54 / BV681264 / Rubus idaeus / Latham / N4.54 / Rubus C / TIR
51_Ri_4-56 / BV681265 / Rubus idaeus / Latham / N4.56 / Rubus I / Non-TIR
52_Ri_4-57 / BV681266 / Rubus idaeus / Latham / N4.57 / Rubus A / TIR
53_Ri_4-58 / BV681267 / Rubus idaeus / Latham / N4.58 / Rubus I / Non-TIR
54_Ri_4-59 / BV681268 / Rubus idaeus / Latham / N4.59 / Rubus A / TIR
55_Ri_4-6 / BV681235 / Rubus idaeus / Latham / N4.6 / Rubus B / TIR
56_Ri_4-60 / BV681269 / Rubus idaeus / Latham / N4.60 / Rubus A / TIR
57_Ri_4-61 / BV681270 / Rubus idaeus / Latham / N4.61 / TIR V
58_Ri_4-62 / BV681271 / Rubus idaeus / Latham / N4.62 / Rubus C / TIR
59_Ri_4-7 / BV681236 / Rubus idaeus / Latham / N4.7 / Rubus K / Non-TIR XI
60_Ri_4-8_ / BV681237 / Rubus idaeus / Latham / N4.8_39 / Rubus E / TIR XI
61_Ri_4-9 / BV681238 / Rubus idaeus / Latham / N4.9 / TIR
62_Ri_6-1 / BV681272 / Rubus idaeus / Latham / N6.1 / Rubus J / Non-TIR VIII
63_Ri_6-10 / BV681276 / Rubus idaeus / Latham / N6.10 / Non-TIR VIII
64_Ri_6-2 / BV681273 / Rubus idaeus / Latham / N6.2 / Rubus J / Non-TIR VIII
65_Ri_6-31 / BV681277 / Rubus idaeus / Latham / N6.31 / Rubus J / Non-TIR VIII
66_Ri_6-32 / BV681278 / Rubus idaeus / Latham / N6.32 / Rubus J / Non-TIR VIII
67_Ri_6-33 / BV681279 / Rubus idaeus / Latham / N6.33 / Rubus J / Non-TIR VIII
68_Ri_6-35 / BV681280 / Rubus idaeus / Latham / N6.35 / Rubus J / Non-TIR VIII
69_Ri_6-5 / BV681274 / Rubus idaeus / Latham / N6.5 / Rubus J / Non-TIR VIII
70_Ri_6-7 / BV681275 / Rubus idaeus / Latham / N6.7 / Rubus J / Non-TIR VIII
71_Ri_9-1 / BV681281 / Rubus idaeus / Latham / N9.1 / Rubus K / Non-TIR XI
72_Ri_9-11 / BV681283 / Rubus idaeus / Latham / N9.11 / Rubus K / Non-TIR XI
73_Ri_9-30 / BV681282 / Rubus idaeus / Latham / N9.30 / Rubus G / Non-TIR
74_Ri_9-32 / BV681284 / Rubus idaeus / Latham / N9.32 / Rubus G / Non-TIR
75_Ri_9-37 / BV681285 / Rubus idaeus / Latham / N9.37 / Non-TIR VII

1.Martinez Zamora MG Castagnaro AP Diaz Ricci JC (2004) Isolation and diversity analysis of resistance gene analogues (RGAs) from cultivated and wild strawberries. Mol Gen Gen 2004. 272:480-487

2.Lee S-Y, Seo J-S, Rodriquez-Lanetty M, Lee D-H (2003) Comparative analysis of superfamilies of NBS-encoding disease resistance gene analogs in cultivated and wild apple species. Mol Gen Genomics 269:101-108

3.Lee SY, Lee DH (2003) Putative TIR-NBS type R protein 4 [Malus baccata]: Expression of the MbR4, a TIR-NBS type of apple R gene, confers resistance to bacterial spot disease in Arabidopsis. Genbank accessions http://www.ncbi.nlm.nih.gov

4.Lee SY, Lee DH (2006) TIR-NBS-LRR type R protein 7 [Malus baccata]: Overexpression of the Apple MbR7 Encoding a TIR-NBS-LRR Type of R gene Induce Enhanced Resistance of Transgenic Arabidopsis Infection with Bacterial Pathogen. Genbank accessions http://www.ncbi.nlm.nih.gov

5.Varshochi A (2006) Putative CC-NBS-LRR resistance protein [Malus x domestica]: Sequencing of a Malus domestica BAC associated with resistance to Dysaphis devecta. Genbank Accessions. http://www.ncbi.nlm.nih.gov

6.Baldi P, Patocchi A, Zini E, Toller C, Velaso R, Komjanc M (2004) Cloning and linkage mapping of resistance gene homologues in apple. Theor Appl Genet 109:231-239

7.Lalli DA, Decroocq V, Blenda AV, Schurdi-Levraud V, Garay L, Le Gall O, Damsteegt V, Reighard GL, Abbott AG (2005) Identification and mapping of resistance gene analogs (RGAs) in Prunus: a resistance map for Prunus. Theor Appl Genet 111:1504-1513

8.Soriano JM, Vilanova S, Romero C, Llácer G, Badenes ML (2005). Characterization and mapping of NBS-LRR resistance gene analogs in apricot (Prunus armeniaca L.). Theor Appl Genet 110:980-989

9.Liang FS, Kong FN, Zhou C-J, Cao P-X, Ye C-J, Wang B (2005) Cloning and characterization of a non-TIR-NBS-LRR type disease resistance gene analogue from peach. . DNA Sequence 16:103-110

10.Afunian MR (2004) Nucleotide binding site leucine-rich repeat disease resistance protein [Pyruscommunis]: Molecular approaches to improving disease resistance in apple and pear. Genbank accessions http://www.ncbi.nlm.nih.gov

11.Hattendorf A, Debener T (2007) Molecular Characterization of NBS-LRR-RGAs in the Rose Genome. Physiol Plant

(in press)

12.Xu Q, Wen X, Deng X (2005) Isolation of TIR and nonTIR NBS–LRR resistance gene analogues and identification of molecular markers linked to a powdery mildew resistance locus in chestnut rose (Rosa roxburghii Tratt). Theor Appl Genet 111:819-830

Supplemental Table A, page 1