Supplementary Table 1 Lists of interactors associated with Ku70 and non-specific interactors as identified by mass spectrometry analysis
Supplementary Table 1a Complete list of proteins copurified with GS-TAP-Ku70
GROUP / ACCESSION No. / NAME / SPECIES / MOLECULAR MASS / No. UNIQUE PEPTIDES1 / IPI00220834.7 / ATP-dependent DNA helicase 2 subunit 2 / Homo sapiens / 82.6 / 49
2 / IPI00644712.3 / ATP-dependent DNA helicase 2 subunit 1 / Homo sapiens / 69.7 / 45
IPI00465430.4 / G22P1 protein / Homo sapiens / 69.9 / 44
IPI00412259.2 / PREDICTED: similar to ATP-dependent DNA helicase II, 70 kDa subunit (Lupus Ku autoantigen protein p70) (Ku70) (70 kDa subunit of Ku antigen) (Thyroid-lupus autoantigen) (TLAA) (CTC box binding factor 75 kDa subunit) (CTCBF) (CTC75) isoform 1 / Homo sapiens / 54.4 / 21
IPI00375805.2 / 41 kDa protein / Homo sapiens / 40.9 / 2
3 / IPI00013452.8 / glutamyl-prolyl tRNA synthetase / Homo sapiens / 170.6 / 31
4 / IPI00414676.5 / Heat shock protein HSP 90-beta / Homo sapiens / 83.1 / 30
IPI00382470.2 / Heat shock protein HSP 90-alpha 2 / Homo sapiens / 98.1 / 30
IPI00334775.5 / Hypothetical protein DKFZp761K0511 / Homo sapiens / 84.8 / 25
IPI00604607.2 / Hsp89-alpha-delta-N / Homo sapiens / 63.3 / 20
IPI00334775.4 / Heat shock protein HSP 90-beta / Homo sapiens / 83.2 / 20
IPI00031523.2 / PREDICTED: heat shock 90kDa protein 1, alpha-like 3 / Homo sapiens / 86.8 / 14
IPI00555614.1 / Heat shock protein 90Bc / Homo sapiens / 68.3 / 14
IPI00027230.3 / Endoplasmin precursor / Homo sapiens / 92.5 / 13
IPI00514027.1 / Heat shock 90kDa protein 1, beta / Homo sapiens / 19.1 / 10
IPI00411633.3 / Heat shock protein beta / Homo sapiens / 17.0 / 8
IPI00555565.1 / Heat shock protein 90Bd / Homo sapiens / 58.3 / 7
IPI00455599.2 / Heat shock protein 90Bb / Homo sapiens / 49.1 / 6
IPI00515119.2 / Heat shock 90kDa protein 1, beta / Homo sapiens / 17.3 / 6
IPI00640129.1 / Heat shock 90kDa protein 1, beta / Homo sapiens / 16.4 / 5
IPI00555876.1 / Heat shock protein 90Ae / Homo sapiens / 38.7 / 5
IPI00514659.2 / Heat shock 90kDa protein 1, beta / Homo sapiens / 19.7 / 4
IPI00455463.1 / PREDICTED: similar to Heat shock protein HSP 90-alpha / Homo sapiens / 49.9 / 4
IPI00555957.1 / Heat shock protein 90Ad / Homo sapiens / 47.4 / 2
5 / IPI00011654.2 / Tubulin beta-2 chain / Homo sapiens / 49.7 / 20
IPI00645452.1 / Tubulin, beta polypeptide / Homo sapiens / 47.8 / 20
IPI00007752.1 / Tubulin beta-2C chain / Homo sapiens / 49.8 / 19
IPI00647896.1 / Tubulin, beta polypeptide / Homo sapiens / 41.7 / 18
IPI00031370.3 / Tubulin, beta polypeptide paralog / Homo sapiens / 50.0 / 17
IPI00013475.1 / tubulin, beta 2 / Homo sapiens / 49.9 / 16
IPI00719595.1 / Tubulin, beTa, 2 / Homo sapiens / 50.9 / 15
IPI00160897.3 / Tubulin, beta 4 / Homo sapiens / 49.6 / 15
IPI00655896.1 / Tubulin, beTa, 2 / Homo sapiens / 52.0 / 15
IPI00023598.1 / Tubulin beta-4 chain / Homo sapiens / 49.6 / 14
IPI00719494.1 / Tubulin beta-2 chain / Homo sapiens / 38.3 / 12
IPI00719118.1 / Tubulin beta-2 chain / Homo sapiens / 35.6 / 12
IPI00719575.1 / Tubulin beta-2 chain / Homo sapiens / 40.8 / 12
IPI00013683.2 / Tubulin beta-3 chain / Homo sapiens / 50.4 / 11
IPI00152453.1 / Tubulin, beta, 4 / Homo sapiens / 88.4 / 11
IPI00719252.1 / TUBB protein (Fragment) / Homo sapiens / 49.9 / 11
IPI00640115.1 / TUBB3 protein / Homo sapiens / 42.4 / 10
IPI00644620.1 / 35 kDa protein / Homo sapiens / 34.6 / 9
IPI00292496.1 / Beta-tubulin 4Q / Homo sapiens / 49.8 / 9
IPI00335160.1 / 50 kDa protein / Homo sapiens / 49.6 / 9
IPI00640845.1 / Similar to Tubulin beta-4 chain / Homo sapiens / 46.6 / 9
IPI00514047.1 / Novel protein similar to beta-tubulin 4Q / Homo sapiens / 45.5 / 8
IPI00174849.4 / 50 kDa protein / Homo sapiens / 49.6 / 8
IPI00182840.3 / 47 kDa protein / Homo sapiens / 47.4 / 7
IPI00647682.1 / 34 kDa protein / Homo sapiens / 34.1 / 7
IPI00641706.1 / 46 kDa protein / Homo sapiens / 45.8 / 7
IPI00034283.3 / Similar to Tubulin beta-5 chain / Homo sapiens / 60.7 / 7
IPI00643158.1 / 43 kDa protein / Homo sapiens / 42.5 / 7
IPI00646779.1 / Tubulin beta-6 chain / Homo sapiens / 49.9 / 7
IPI00018511.1 / Tubulin beta-4q chain / Homo sapiens / 48.4 / 6
IPI00642243.1 / Novel protein similar to beta-tubulin 4Q / Homo sapiens / 25.0 / 6
IPI00397746.2 / PREDICTED: similar to tubulin, beta 8; HSA10p15 beta-tubulin 4Q (TUBB4Q) gene / Homo sapiens / 40.4 / 6
IPI00006510.1 / Tubulin beta-1 chain / Homo sapiens / 50.3 / 5
IPI00398982.1 / PREDICTED: similar to tubulin, beta 5 / Homo sapiens / 12.1 / 3
IPI00217903.3 / PREDICTED: similar to tubulin, beta 5 / Homo sapiens / 24.2 / 3
6 / IPI00387144.4 / Tubulin alpha-ubiquitous chain / Homo sapiens / 50.2 / 20
IPI00180675.4 / Tubulin alpha-3 chain / Homo sapiens / 50.1 / 19
IPI00218343.4 / Tubulin alpha-6 chain / Homo sapiens / 49.9 / 18
IPI00552356.1 / alpha-tubulin isotype H2-alpha / Homo sapiens / 50.0 / 16
IPI00179709.4 / Isoform 1 of Tubulin alpha-2 chain / Homo sapiens / 50.0 / 16
IPI00655535.1 / Tubulin alpha-4 chain / Homo sapiens / 50.6 / 16
IPI00007750.1 / Tubulin alpha-1 chain / Homo sapiens / 49.9 / 16
IPI00328163.1 / K-ALPHA-1 protein / Homo sapiens / 37.2 / 15
IPI00719529.1 / Tubulin alpha 6 variant (Fragment) / Homo sapiens / 49.8 / 15
IPI00218345.3 / Splice Isoform 2 of Tubulin alpha-2 chain / Homo sapiens / 46.1 / 13
IPI00414274.2 / 46 kDa protein / Homo sapiens / 46.1 / 13
IPI00166768.2 / TUBA6 protein / Homo sapiens / 37.0 / 10
IPI00646909.1 / Tubulin family protein / Homo sapiens / 56.7 / 10
IPI00410402.1 / Hypothetical protein LOC112714 / Homo sapiens / 49.9 / 10
IPI00335314.3 / 30 kDa protein / Homo sapiens / 29.7 / 7
IPI00478908.1 / PREDICTED: similar to Tubulin alpha-2 chain (Alpha-tubulin 2) isoform 1 / Homo sapiens / 51.4 / 7
IPI00644405.1 / Tubulin alpha-2 chain / Homo sapiens / 37.0 / 6
IPI00015671.3 / tubulin, alpha-like 3 / Homo sapiens / 49.9 / 5
IPI00100470.1 / Alpha-tubulin isotype H2-alpha (Fragment) / Homo sapiens / 10.9 / 4
IPI00017454.3 / CDNA FLJ13940 fis, clone Y79AA1000833, moderately similar to TUBULIN ALPHA-1 CHAIN / Homo sapiens / 27.5 / 3
IPI00457376.1 / PREDICTED: similar to alpha tubulin / Homo sapiens / 70.6 / 3
IPI00062209.4 / AlphA tubulin-like / Homo sapiens / 17.1 / 2
7 / IPI00644165.1 / Similar to Beta actin / Homo sapiens / 44.6 / 20
IPI00021439.1 / Actin, cytoplasmic 1 / Homo sapiens / 41.7 / 20
IPI00642997.1 / Actin, cytoplasmic 2 / Homo sapiens / 43.9 / 20
IPI00021440.1 / Actin, cytoplasmic 2 / Homo sapiens / 41.8 / 20
IPI00023006.1 / Actin, alpha cardiac / Homo sapiens / 42.0 / 14
IPI00021428.1 / Actin, alpha skeletal muscle / Homo sapiens / 42.1 / 14
IPI00008603.1 / Actin, aortic smooth muscle / Homo sapiens / 42.0 / 13
IPI00025416.3 / Actin, gamma-enteric smooth muscle / Homo sapiens / 41.9 / 13
IPI00515047.1 / Actin, alpha 1, skeletal muscle / Homo sapiens / 32.0 / 13
IPI00414057.2 / Actin alpha 1 skeletal muscle protein / Homo sapiens / 28.2 / 12
IPI00640698.1 / Actin, gamma-enteric smooth muscle / Homo sapiens / 43.2 / 12
IPI00514530.3 / AlphA 1 Actin precursor; AlphA skeletAl muscle Actin / Homo sapiens / 37.8 / 12
IPI00645534.1 / Actin, alpha 2, smooth muscle, aorta / Homo sapiens / 16.8 / 8
IPI00719768.1 / ACTA2 protein (Fragment) / Homo sapiens / 36.8 / 8
IPI00248359.4 / PREDICTED: similar to POTE2A / Homo sapiens / 67.3 / 6
IPI00401614.2 / PREDICTED: similar to FKSG30 / Homo sapiens / 117.7 / 6
IPI00003269.1 / hypothetical protein LOC345651 / Homo sapiens / 42.0 / 6
IPI00644182.1 / Similar to Actin, alpha cardiac / Homo sapiens / 23.7 / 5
IPI00157721.7 / PREDICTED: similar to actin-like protein / Homo sapiens / 46.2 / 4
IPI00647074.1 / Similar to Actin 5, muscle-specific / Homo sapiens / 6.2 / 4
IPI00555571.1 / PREDICTED: similar to FKSG30 / Homo sapiens / 42.0 / 4
IPI00455475.1 / PREDICTED: similar to cytoskeletal beta actin / Homo sapiens / 36.0 / 3
IPI00455685.1 / PREDICTED: similar to actin alpha 1 skeletal muscle protein / Homo sapiens / 24.9 / 3
IPI00555900.1 / FKSG30 / Homo sapiens / 42.0 / 3
IPI00556391.1 / Actin-like protein (Fragment) / Homo sapiens / 11.5 / 2
IPI00555733.1 / Actin-like protein (Fragment) / Homo sapiens / 11.8 / 2
IPI00655798.1 / Actin-like protein (Fragment) / Homo sapiens / 11.5 / 2
8 / IPI00472102.2 / 60 kDa heat shock protein, mitochondrial precursor / Homo sapiens / 27.1 / 18
IPI00028196.4 / PREDICTED: KIAA1765 protein / Homo sapiens / 165.6 / 4
IPI00076042.2 / Short heat shock protein 60 Hsp60s2 / Homo sapiens / 61.1 / 3
9 / IPI00024067.2 / Similar to Clathrin heavy chain / Homo sapiens / 192.1 / 16
IPI00455383.2 / Similar to Clathrin heavy chain / Homo sapiens / 187.9 / 16
IPI00022881.1 / Isoform 1 of Clathrin heavy chain 2 / Homo sapiens / 187.0 / 3
IPI00300446.1 / Isoform 2 of Clathrin heavy chain 2 / Homo sapiens / 180.3 / 3
IPI00477339.1 / Clathrin, heavy polypeptide-like 1 isoform b / Homo sapiens / 185.3 / 3
10 / IPI00604620.2 / Nucleolin / Homo sapiens / 76.6 / 16
IPI00444262.1 / CDNA FLJ45706 fis, clone FEBRA2028457, highly similar to Nucleolin / Homo sapiens / 66.0 / 15
IPI00604517.2 / 74 kDa protein / Homo sapiens / 74.4 / 14
IPI00183526.5 / NCL protein / Homo sapiens / 51.6 / 9
IPI00604517.1 / Hypothetical protein FLJ34423 / Homo sapiens / 74.3 / 9
11 / IPI00553185.2 / T-complex protein 1 subunit gamma / Homo sapiens / 60.5 / 16
IPI00290770.3 / chaperonin containing TCP1, subunit 3 isoform b / Homo sapiens / 60.5 / 16
IPI00552715.1 / chaperonin containing TCP1, subunit 3 isoform c / Homo sapiens / 56.4 / 15
IPI00514032.1 / Chaperonin containing TCP1, subunit 3 / Homo sapiens / 30.8 / 8
IPI00513814.1 / Chaperonin containing TCP1, subunit 3 / Homo sapiens / 20.9 / 5
IPI00513703.1 / Chaperonin containing TCP1, subunit 3 / Homo sapiens / 17.5 / 5
IPI00514218.1 / Chaperonin containing TCP1, subunit 3 / Homo sapiens / 17.9 / 4
12 / IPI00216049.1 / Isoform 1 of Heterogeneous nuclear ribonucleoprotein K / Homo sapiens / 51.0 / 15
IPI00216746.1 / Isoform 2 of Heterogeneous nuclear ribonucleoprotein K / Homo sapiens / 51.0 / 15
IPI00514561.1 / Heterogeneous nuclear ribonucleoprotein K / Homo sapiens / 47.6 / 14
IPI00647717.1 / Heterogeneous nuclear ribonucleoprotein K / Homo sapiens / 41.8 / 12
IPI00640296.1 / Heterogeneous nuclear ribonucleoprotein K / Homo sapiens / 34.0 / 8
IPI00175108.3 / 36 kDa protein / Homo sapiens / 35.7 / 3
IPI00398052.2 / PREDICTED: similar to heterogeneous nuclear ribonucleoprotein K / Homo sapiens / 43.0 / 3
13 / IPI00027107.4 / Elongation factor Tu, mitochondrial precursor / Homo sapiens / 49.5 / 14
14 / IPI00302925.3 / T-complex protein 1 subunit theta / Homo sapiens / 59.8 / 13
15 / IPI00013068.1 / Eukaryotic translation initiation factor 3 subunit 6 / Homo sapiens / 52.2 / 12
16 / IPI00025491.1 / Eukaryotic initiation factor 4A-I / Homo sapiens / 46.2 / 12
IPI00555602.1 / CD68 antigen variant (Fragment) / Homo sapiens / 42.4 / 11
IPI00386604.1 / Hypothetical protein (Fragment) / Homo sapiens / 51.8 / 10
IPI00385962.1 / 37 kDa protein / Homo sapiens / 37.5 / 8
IPI00163147.5 / 45 kDa protein / Homo sapiens / 44.9 / 6
IPI00328328.3 / Isoform 1 of Eukaryotic initiation factor 4A-II / Homo sapiens / 46.4 / 6
IPI00409717.1 / Isoform 2 of Eukaryotic initiation factor 4A-II / Homo sapiens / 46.5 / 6
IPI00030296.4 / Eukaryotic initiation factor 4A-II / Homo sapiens / 36.2 / 2
IPI00030296.5 / BM-010 / Homo sapiens / 36.2 / 2
17 / IPI00465233.1 / DJ1014D13.1 protein / Homo sapiens / 70.9 / 11
IPI00333473.3 / 32 kDa protein / Homo sapiens / 31.9 / 2
IPI00004208.3 / PREDICTED: similar to bA508N22.1 / Homo sapiens / 51.2 / 2
18 / IPI00009032.1 / Lupus La protein / Homo sapiens / 46.8 / 11
IPI00240894.2 / 32 kDa protein / Homo sapiens / 31.5 / 4
19 / IPI00025054.1 / Splice Isoform Long of Heterogenous nuclear ribonucleoprotein U / Homo sapiens / 90.5 / 11
IPI00479217.1 / heterogeneous nuclear ribonucleoprotein U isoform b / Homo sapiens / 89.0 / 11
IPI00644079.1 / Heterogenous nuclear ribonucleoprotein U / Homo sapiens / 83.1 / 11
IPI00386491.4 / Splice Isoform Short of Heterogenous nuclear ribonucleoprotein U / Homo sapiens / 88.9 / 11
IPI00644224.1 / Heterogeneous nuclear ribonucleoprotein U / Homo sapiens / 61.8 / 8
IPI00640106.1 / Heterogeneous nuclear ribonucleoprotein U / Homo sapiens / 27.4 / 3
20 / IPI00410693.3 / Isoform 1 of Plasminogen activator inhibitor 1 RNA-binding protein / Homo sapiens / 45.0 / 11
IPI00470498.1 / Isoform 3 of Plasminogen activator inhibitor 1 RNA-binding protein / Homo sapiens / 43.1 / 11
IPI00470497.3 / Isoform 2 of Plasminogen activator inhibitor 1 RNA-binding protein / Homo sapiens / 44.3 / 10
IPI00412714.3 / Isoform 4 of Plasminogen activator inhibitor 1 RNA-binding protein / Homo sapiens / 42.4 / 10
21 / IPI00019502.2 / Myosin-9 / Homo sapiens / 226.4 / 10
IPI00395772.4 / Hypothetical protein DKFZp451J0218 / Homo sapiens / 154.2 / 8
IPI00397526.1 / Myosin-10 / Homo sapiens / 228.9 / 7
IPI00024870.1 / smooth muscle myosin heavy chain 11 isoform SM2A / Homo sapiens / 223.6 / 6
IPI00020501.1 / Myosin-11 / Homo sapiens / 227.3 / 6
IPI00607818.1 / Isoform 2 of Myosin-14 / Homo sapiens / 231.2 / 3
IPI00607760.1 / Isoform 3 of Myosin-14 / Homo sapiens / 171.4 / 3
IPI00029818.3 / Splice Isoform 5 of Myosin-14 / Homo sapiens / 168.0 / 3
IPI00337335.3 / Splice Isoform 1 of Myosin-14 / Homo sapiens / 203.1 / 3
IPI00607778.1 / Isoform 4 of Myosin-14 / Homo sapiens / 228.0 / 3
22 / IPI00657680.1 / 55 kDa protein / Homo sapiens / 55.0 / 10
IPI00025252.1 / Protein disulfide-isomerase A3 precursor / Homo sapiens / 56.8 / 10
23 / IPI00333541.4 / Filamin-A / Homo sapiens / 280.6 / 10
IPI00302592.2 / Filamin A, alpha / Homo sapiens / 280.0 / 10
IPI00644576.1 / Filamin A, alpha / Homo sapiens / 276.6 / 10
IPI00553169.2 / Filamin A, alpha / Homo sapiens / 18.9 / 2
24 / IPI00479366.1 / 31 kDa protein / Homo sapiens / 31.4 / 9
IPI00013485.3 / 40S ribosomal protein S2 / Homo sapiens / 31.3 / 9
IPI00455532.1 / PREDICTED: similar to ribosomal protein S2; 40S ribosomal protein S2 / Homo sapiens / 32.4 / 9
IPI00556325.1 / PREDICTED: similar to ribosomal protein S2; 40S ribosomal protein S2 / Homo sapiens / 31.4 / 9
IPI00478002.1 / 31 kDa protein / Homo sapiens / 31.3 / 5
IPI00165486.9 / PREDICTED: similar to ribosomal protein S2 isoform 1 / Homo sapiens / 30.0 / 5
IPI00455428.3 / PREDICTED: similar to ribosomal protein S2 isoform 1 / Homo sapiens / 29.8 / 5
IPI00479885.1 / PREDICTED: similar to ribosomal protein S2 / Homo sapiens / 29.9 / 5
IPI00479281.1 / 27 kDa protein / Homo sapiens / 26.5 / 4
IPI00457306.1 / PREDICTED: similar to ribosomal protein S2 / Homo sapiens / 90.2 / 4
IPI00414967.1 / 28 kDa protein / Homo sapiens / 27.8 / 4
IPI00414895.3 / PREDICTED: similar to ribosomal protein S2; 40S ribosomal protein S2 / Homo sapiens / 25.5 / 4
IPI00386445.1 / Ribosomal protein S2 / Homo sapiens / 21.7 / 3
IPI00455340.1 / PREDICTED: similar to 40S ribosomal protein S2 / Homo sapiens / 23.2 / 2
IPI00402259.2 / Similar to Ribosomal protein S2 / Homo sapiens / 25.9 / 2
IPI00152242.2 / PREDICTED: similar to ribosomal protein S2; 40S ribosomal protein S2 / Homo sapiens / 27.1 / 2
25 / IPI00300659.4 / Parafibromin / Homo sapiens / 60.6 / 9
IPI00448517.1 / Hypothetical protein (Fragment) / Homo sapiens / 33.5 / 8
26 / IPI00299000.3 / Proliferation-associated protein 2G4 / Homo sapiens / 43.8 / 9
27 / IPI00644989.1 / Protein disulfide-isomerase A6 precursor / Homo sapiens / 48.1 / 8
IPI00299571.4 / CDNA FLJ45525 fis, clone BRTHA2026311, highly similar to Protein disulfide isomerase A6 / Homo sapiens / 53.9 / 8
28 / IPI00009104.6 / RuvB-like 2 / Homo sapiens / 51.0 / 8
29 / IPI00290566.1 / T-complex protein 1 subunit alpha / Homo sapiens / 60.3 / 8
IPI00550591.1 / T-complex protein 1 isoform b / Homo sapiens / 43.9 / 7
30 / IPI00029012.1 / Eukaryotic translation initiation factor 3 subunit 10 / Homo sapiens / 166.6 / 8
31 / IPI00477179.1 / Isoform 2 of Nucleolar RNA helicase 2 / Homo sapiens / 87.3 / 8
IPI00015953.3 / Isoform 1 of Nucleolar RNA helicase 2 / Homo sapiens / 79.7 / 8
32 / IPI00007423.1 / Isoform 1 of Acidic leucine-rich nuclear phosphoprotein 32 family member B / Homo sapiens / 28.8 / 7
IPI00449263.1 / ANP32A protein (Fragment) / Homo sapiens / 24.1 / 6
IPI00025849.1 / Acidic leucine-rich nuclear phosphoprotein 32 family member A / Homo sapiens / 28.6 / 6
IPI00394706.1 / PHAPI protein (Fragment) / Homo sapiens / 15.3 / 5
IPI00479054.2 / 24 kDa protein / Homo sapiens / 23.9 / 5
IPI00647001.1 / Acidic / Homo sapiens / 18.0 / 3
IPI00455251.1 / PREDICTED: similar to acidic (leucine-rich) nuclear phosphoprotein 32 family, member A; putative human HLA class II associated protein I; cerebellar leucine rich acidic nuclear protein; inhibitor-1 of protein phosphatase-2A; mapmodulin / Homo sapiens / 20.0 / 3
33 / IPI00301311.1 / Isoform 2 of Protein SET / Homo sapiens / 32.1 / 7
IPI00646059.1 / SET translocation / Homo sapiens / 31.1 / 6
IPI00072377.1 / Isoform 1 of Protein SET / Homo sapiens / 33.5 / 6
IPI00397984.2 / PREDICTED: similar to SET protein / Homo sapiens / 28.3 / 4
34 / IPI00396171.3 / Isoform 1 of Microtubule-associated protein 4 / Homo sapiens / 121.0 / 7
IPI00220113.1 / Isoform 2 of Microtubule-associated protein 4 / Homo sapiens / 102.9 / 6
IPI00479737.1 / 67 kDa protein / Homo sapiens / 67.5 / 5
IPI00411375.1 / microtubule-associated protein 4 isoform 2 / Homo sapiens / 92.7 / 2
IPI00470852.1 / Microtubule-associated protein (Fragment) / Homo sapiens / 50.9 / 2
35 / IPI00018350.3 / DNA replication licensing factor MCM5 / Homo sapiens / 82.3 / 7
IPI00555581.1 / Minichromosome maintenance deficient protein 5 variant (Fragment) / Homo sapiens / 45.8 / 4
36 / IPI00017617.1 / Probable ATP-dependent RNA helicase DDX5 / Homo sapiens / 69.1 / 7
IPI00641880.1 / Conserved hypothetical protein / Homo sapiens / 28.0 / 3
IPI00651653.1 / Isoform 3 of Probable ATP-dependent RNA helicase DDX17 / Homo sapiens / 72.6 / 2
IPI00651677.1 / Isoform 2 of Probable ATP-dependent RNA helicase DDX17 / Homo sapiens / 72.5 / 2
IPI00023785.5 / Isoform 1 of Probable ATP-dependent RNA helicase DDX17 / Homo sapiens / 72.4 / 2
37 / IPI00640222.1 / Similar to Elongation factor 1-gamma / Homo sapiens / 49.8 / 7
IPI00000875.5 / Elongation factor 1-gamma / Homo sapiens / 50.0 / 7
38 / IPI00186290.5 / Elongation factor 2 / Homo sapiens / 95.2 / 7
IPI00440662.1 / Antigen MLAA-42 (Fragment) / Homo sapiens / 16.9 / 2
39 / IPI00479191.1 / HNRPH1 protein / Homo sapiens / 51.2 / 6
IPI00479484.1 / 48 kDa protein / Homo sapiens / 47.9 / 6
IPI00477925.1 / 50 kDa protein / Homo sapiens / 50.5 / 6
IPI00013881.5 / heterogeneous nuclear ribonucleoprotein H1 / Homo sapiens / 49.2 / 6
IPI00478348.2 / 46 kDa protein / Homo sapiens / 45.6 / 6
IPI00003881.5 / heterogeneous nuclear ribonucleoprotein F / Homo sapiens / 45.7 / 5
IPI00026230.1 / Heterogeneous nuclear ribonucleoprotein H' / Homo sapiens / 49.3 / 2
40 / IPI00013214.1 / DNA replication licensing factor MCM3 / Homo sapiens / 91.0 / 6
41 / IPI00012535.1 / DnaJ homolog subfamily A member 1 / Homo sapiens / 44.9 / 6
IPI00386128.1 / HDJ2 protein (Fragment) / Homo sapiens / 29.5 / 3
42 / IPI00018349.5 / DNA replication licensing factor MCM4 / Homo sapiens / 96.6 / 6
43 / IPI00438230.1 / Isoform 2 of Transcription intermediary factor 1-beta / Homo sapiens / 79.5 / 6
IPI00438229.1 / tripartite motif-containing 28 protein / Homo sapiens / 88.5 / 6
44 / IPI00021187.3 / RuvB-like 1 / Homo sapiens / 50.2 / 6
45 / IPI00645329.1 / 46 kDa protein / Homo sapiens / 46.2 / 5
IPI00328319.7 / Histone-binding protein RBBP4 / Homo sapiens / 47.5 / 5
IPI00645757.1 / Protein / Homo sapiens / 24.4 / 4
IPI00552530.1 / Retinoblastoma binding protein 7 / Homo sapiens / 31.5 / 2
IPI00395865.4 / Histone-binding protein RBBP7 / Homo sapiens / 47.8 / 2
IPI00646512.1 / Retinoblastoma binding protein 7 / Homo sapiens / 52.3 / 2
46 / IPI00410017.1 / Isoform 2 of Polyadenylate-binding protein 1 / Homo sapiens / 61.2 / 5
IPI00008524.1 / Isoform 1 of Polyadenylate-binding protein 1 / Homo sapiens / 70.7 / 5
IPI00478522.1 / 61 kDa protein / Homo sapiens / 61.3 / 5
IPI00301154.3 / Polyadenylate-binding protein 3 / Homo sapiens / 70.0 / 3
IPI00642944.1 / Poly(A) binding protein, cytoplasmic 4 / Homo sapiens / 68.0 / 2
IPI00642904.1 / Poly(A) binding protein, cytoplasmic 4 / Homo sapiens / 72.4 / 2
IPI00644016.1 / Poly(A) binding protein, cytoplasmic 4 / Homo sapiens / 14.4 / 2
IPI00555747.1 / Isoform 2 of Polyadenylate-binding protein 4 / Homo sapiens / 69.6 / 2
IPI00012726.4 / Isoform 1 of Polyadenylate-binding protein 4 / Homo sapiens / 70.8 / 2
47 / IPI00396373.1 / BLOCK 23 / Homo sapiens / 34.4 / 5
IPI00008530.1 / 60S acidic ribosomal protein P0 / Homo sapiens / 34.3 / 5
IPI00556485.2 / RPLP0 protein / Homo sapiens / 27.4 / 4
IPI00719388.1 / RPLP0 protein / Homo sapiens / 27.3 / 3
48 / IPI00069750.1 / fuse-binding protein-interacting repressor isoform a / Homo sapiens / 59.9 / 5
IPI00100716.1 / fuse-binding protein-interacting repressor isoform b / Homo sapiens / 58.2 / 5
49 / IPI00384456.4 / Isoform GTBP-N of DNA mismatch repair protein MSH6 / Homo sapiens / 152.8 / 5
IPI00106847.3 / Isoform GTBP-alt of DNA mismatch repair protein MSH6 / Homo sapiens / 120.6 / 4
50 / IPI00419373.1 / Isoform 1 of Heterogeneous nuclear ribonucleoprotein A3 / Homo sapiens / 39.6 / 5
IPI00455134.1 / Isoform 2 of Heterogeneous nuclear ribonucleoprotein A3 / Homo sapiens / 37.0 / 5
IPI00470658.1 / FBRNP / Homo sapiens / 30.9 / 3
IPI00374686.2 / 31 kDa protein / Homo sapiens / 29.4 / 3
IPI00398984.2 / PREDICTED: similar to heterogeneous nuclear ribonucleoprotein A3 / Homo sapiens / 32.9 / 2
51 / IPI00020599.1 / Calreticulin precursor / Homo sapiens / 48.1 / 5
IPI00383751.1 / CALRETICULIN=CALCIUM binding protein (Fragment) / Homo sapiens / 22.9 / 3
52 / IPI00012442.1 / Ras-GTPase-activating protein-binding protein 1 / Homo sapiens / 52.2 / 5
IPI00442863.1 / CDNA FLJ26493 fis, clone KDN06317, highly similar to Ras-GTPase- activating protein binding protein 1 / Homo sapiens / 34.6 / 3
53 / IPI00016613.2 / CSNK2A1 protein / Homo sapiens / 45.9 / 5
54 / IPI00022977.1 / Creatine kinase B-type / Homo sapiens / 42.6 / 5
55 / IPI00219301.6 / Myristoylated alanine-rich C-kinase substrate / Homo sapiens / 31.4 / 5
56 / IPI00657954.1 / 118 kDa protein / Homo sapiens / 117.6 / 5
IPI00329791.7 / Probable ATP-dependent RNA helicase DDX46 / Homo sapiens / 117.5 / 5
57 / IPI00411559.2 / Isoform 1 of Structural maintenance of chromosomes 4-like 1 protein / Homo sapiens / 147.2 / 4
IPI00328298.6 / Isoform 2 of Structural maintenance of chromosomes 4-like 1 protein / Homo sapiens / 140.3 / 4
58 / IPI00300371.3 / Splicing factor 3B subunit 3 / Homo sapiens / 135.6 / 4
59 / IPI00221106.5 / splicing factor 3B subunit 2 / Homo sapiens / 100.2 / 4
IPI00477803.2 / Similar to Splicing factor 3B subunit 2 / Homo sapiens / 89.8 / 3
60 / IPI00641829.1 / HLA-B associated transcript 1 variant / Homo sapiens / 49.0 / 4
IPI00328343.7 / Spliceosome RNA helicase BAT1 / Homo sapiens / 49.0 / 4
IPI00642800.1 / HLA-B associated transcript 1 / Homo sapiens / 26.4 / 3
IPI00641952.1 / 23 kDa protein / Homo sapiens / 22.7 / 3
IPI00641634.1 / HLA-B associated transcript 1 / Homo sapiens / 24.6 / 3
IPI00643815.1 / HLA-B associated transcript 1 / Homo sapiens / 27.6 / 3
IPI00644541.1 / 30 kDa protein / Homo sapiens / 30.2 / 2
IPI00640787.1 / HLA-B associated transcript 1 / Homo sapiens / 20.4 / 2
IPI00641325.1 / HLA-B associated transcript 1 / Homo sapiens / 18.1 / 2
IPI00552922.1 / HLA-B associated transcript 1 (Fragment) / Homo sapiens / 21.9 / 2
IPI00644431.1 / ATP-dependent RNA helicase DDX39 / Homo sapiens / 49.1 / 2
61 / IPI00219330.2 / Isoform 5 of Interleukin enhancer-binding factor 3 / Homo sapiens / 74.6 / 4
IPI00298789.2 / Isoform 2 of Interleukin enhancer-binding factor 3 / Homo sapiens / 76.0 / 4
IPI00414335.1 / Isoform 3 of Interleukin enhancer-binding factor 3 / Homo sapiens / 82.9 / 4
IPI00418313.3 / Isoform 4 of Interleukin enhancer-binding factor 3 / Homo sapiens / 95.8 / 4
IPI00298788.4 / Isoform 1 of Interleukin enhancer-binding factor 3 / Homo sapiens / 95.3 / 4
IPI00556173.1 / Isoform 6 of Interleukin enhancer-binding factor 3 / Homo sapiens / 76.5 / 4
IPI00556364.1 / Interleukin enhancer binding factor 3 isoform c variant (Fragment) / Homo sapiens / 50.1 / 2
62 / IPI00299033.1 / Importin alpha-3 subunit / Homo sapiens / 57.8 / 4
IPI00012578.1 / Importin alpha-4 subunit / Homo sapiens / 57.9 / 3
63 / IPI00383581.3 / Isoform 1 of Neutral alpha-glucosidase AB precursor / Homo sapiens / 106.9 / 4
IPI00472068.1 / 107 kDa protein / Homo sapiens / 106.8 / 4
IPI00441414.1 / Isoform 3 of Neutral alpha-glucosidase AB precursor / Homo sapiens / 96.2 / 4
IPI00011454.1 / Isoform 2 of Neutral alpha-glucosidase AB precursor / Homo sapiens / 109.4 / 3
IPI00394880.3 / alpha glucosidase II alpha subunit isoform 1 / Homo sapiens / 85.8 / 2
64 / IPI00031517.1 / DNA replication licensing factor MCM6 / Homo sapiens / 92.9 / 4
65 / IPI00215719.5 / 60S ribosomal protein L18 / Homo sapiens / 21.5 / 4
66 / IPI00554737.1 / Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform / Homo sapiens / 65.1 / 4
IPI00419307.2 / alpha isoform of regulatory subunit A, protein phosphatase 2 / Homo sapiens / 65.3 / 4
IPI00168184.6 / CDNA FLJ34068 fis, clone FCBBF3001918, highly similar to SERINE/THREONINE PROTEIN PHOSPHATASE 2A, 65 kDa REGULATORY SUBUNIT A, ALPHA ISOFORM / Homo sapiens / 45.6 / 3
67 / IPI00549248.3 / Nucleophosmin / Homo sapiens / 32.9 / 4
IPI00220740.1 / Isoform 2 of Nucleophosmin / Homo sapiens / 29.5 / 4
IPI00658013.1 / nucleophosmin 1 isoform 3 / Homo sapiens / 28.4 / 4
IPI00478731.1 / 29 kDa protein / Homo sapiens / 29.0 / 3
IPI00455423.1 / PREDICTED: similar to nucleophosmin 1; nucleolar phosphoprotein B23; numatrin; nucleophosmin/nucleoplasmin family, member 1 / Homo sapiens / 33.0 / 2
IPI00478995.1 / 30 kDa protein / Homo sapiens / 30.1 / 2
IPI00140696.5 / 30 kDa protein / Homo sapiens / 29.6 / 2
68 / IPI00472171.2 / Hypothetical protein / Homo sapiens / 37.0 / 3
IPI00011457.1 / WUGSC:H_RG054D04.1 protein / Homo sapiens / 29.0 / 3
IPI00398699.1 / 29 kDa protein / Homo sapiens / 29.2 / 3
IPI00144171.2 / PREDICTED: similar to 60S ribosomal protein L7 isoform 1 / Homo sapiens / 30.5 / 3
IPI00030179.3 / 60S ribosomal protein L7 / Homo sapiens / 29.2 / 3
IPI00397635.2 / PREDICTED: similar to ribosomal protein L7 / Homo sapiens / 34.3 / 2
IPI00027155.4 / PREDICTED: similar to 60S ribosomal protein L7 / Homo sapiens / 57.1 / 2
69 / IPI00021840.1 / 40S ribosomal protein S6 / Homo sapiens / 28.7 / 3
IPI00643522.1 / 25 kDa protein / Homo sapiens / 25.0 / 2
70 / IPI00171664.2 / Nucleoporin 43kDa / Homo sapiens / 48.5 / 3
71 / IPI00013122.1 / Hsp90 co-chaperone Cdc37 / Homo sapiens / 44.5 / 3
72 / IPI00031836.3 / Developmentally-regulated GTP-binding protein 1 / Homo sapiens / 40.5 / 3
73 / IPI00029107.1 / Werner syndrome ATP-dependent helicase / Homo sapiens / 162.5 / 3
74 / IPI00031812.1 / Nuclease sensitive element-binding protein 1 / Homo sapiens / 35.9 / 3
IPI00450235.1 / Nuclease sensitive element binding protein-1 / Homo sapiens / 34.7 / 2
IPI00643351.1 / Protein / Homo sapiens / 41.9 / 2
IPI00385699.1 / DNA-binding protein / Homo sapiens / 35.4 / 2
75 / IPI00471915.1 / 48 kDa protein / Homo sapiens / 47.6 / 3
IPI00003918.4 / 60S ribosomal protein L4 / Homo sapiens / 47.7 / 3
76 / IPI00470590.1 / splicing factor 3a, subunit 1, 120kDa isoform 2 / Homo sapiens / 81.7 / 3
IPI00017451.1 / Splicing factor 3 subunit 1 / Homo sapiens / 88.9 / 3
77 / IPI00329389.5 / 60S ribosomal protein L6 / Homo sapiens / 32.6 / 3
IPI00373918.2 / PREDICTED: similar to 60S ribosomal protein L6 / Homo sapiens / 24.5 / 3
IPI00375789.2 / PREDICTED: similar to ribosomal protein L6 / Homo sapiens / 21.7 / 2
78 / IPI00465044.2 / Protein RCC2 / Homo sapiens / 56.1 / 2
79 / IPI00024364.2 / Transportin-1 / Homo sapiens / 102.4 / 2
80 / IPI00031556.5 / Splicing factor U2AF 65 kDa subunit / Homo sapiens / 53.5 / 2
IPI00552483.1 / U2 (RNU2) small nuclear RNA auxiliary factor 2 isoform b / Homo sapiens / 53.1 / 2
81 / IPI00465361.3 / 60S ribosomal protein L13 / Homo sapiens / 24.1 / 2
82 / IPI00022744.5 / Isoform 1 of Exportin-2 / Homo sapiens / 110.4 / 2
IPI00219994.2 / Isoform 3 of Exportin-2 / Homo sapiens / 107.8 / 2
83 / IPI00003627.1 / Isoform 1 of Actin-like protein 6A / Homo sapiens / 47.5 / 2
IPI00216622.1 / Isoform 2 of Actin-like protein 6A / Homo sapiens / 43.2 / 2
84 / IPI00477468.1 / RNA polymerase-associated protein CTR9 homolog / Homo sapiens / 133.5 / 2
IPI00005625.2 / 136 kDa protein / Homo sapiens / 135.7 / 2
85 / IPI00045396.1 / Isoform 2 of Calumenin precursor / Homo sapiens / 37.1 / 2
IPI00014537.2 / Calumenin precursor / Homo sapiens / 38.1 / 2
86 / IPI00479209.1 / 46 kDa protein / Homo sapiens / 46.0 / 2
IPI00385834.3 / Isoform 2 of KH domain-containing, RNA-binding, signal transduction-associated protein 1 / Homo sapiens / 45.9 / 2
IPI00008575.3 / Isoform 1 of KH domain-containing, RNA-binding, signal transduction-associated protein 1 / Homo sapiens / 48.2 / 2
87 / IPI00643958.1 / Similar to NASCENT polypeptide associated complex alpha subunit / Homo sapiens / 96.1 / 2
IPI00023748.3 / Nascent polypeptide-associated complex subunit alpha / Homo sapiens / 23.4 / 2
88 / IPI00029764.1 / Splicing factor 3A subunit 3 / Homo sapiens / 58.8 / 2
IPI00335026.1 / 46 kDa protein / Homo sapiens / 45.7 / 2
89 / IPI00184330.5 / DNA replication licensing factor MCM2 / Homo sapiens / 101.9 / 2
90 / IPI00005198.2 / Interleukin enhancer-binding factor 2 / Homo sapiens / 43.1 / 2
IPI00556319.1 / Interleukin enhancer binding factor 2 variant / Homo sapiens / 44.7 / 2
91 / IPI00374249.4 / 13 kDa protein / Homo sapiens / 12.6 / 2
IPI00479315.1 / 30 kDa protein / Homo sapiens / 30.2 / 2
IPI00644558.1 / Ribosomal protein L7a / Homo sapiens / 21.5 / 2
IPI00299573.11 / 60S ribosomal protein L7a / Homo sapiens / 29.9 / 2
IPI00397676.3 / PREDICTED: similar to 60S ribosomal protein L7a / Homo sapiens / 58.2 / 2
92 / IPI00395646.1 / thioredoxin domain containing 5 isoform 2 / Homo sapiens / 43.7 / 2
IPI00171438.2 / Thioredoxin domain-containing protein 5 precursor / Homo sapiens / 47.6 / 2
93 / IPI00297452.5 / TRK-fused gene/anaplastic large cell lymphoma kinase extra long form / Homo sapiens / 88.7 / 2
IPI00294619.1 / Protein TFG / Homo sapiens / 43.4 / 2
IPI00099999.1 / TRK-fused gene / Homo sapiens / 43.4 / 2
94 / IPI00005979.2 / Isoform 1 of Translation initiation factor eIF-2B subunit delta / Homo sapiens / 57.6 / 2
IPI00654843.1 / eukaryotic translation initiation factor 2B, subunit 4 delta isoform 3 / Homo sapiens / 57.5 / 2
IPI00220232.1 / Isoform 2 of Translation initiation factor eIF-2B subunit delta / Homo sapiens / 59.7 / 2
95 / IPI00165041.3 / Treacher Collins-Franceschetti syndrome 1 isoform a / Homo sapiens / 148.3 / 2
IPI00298696.1 / Treacle protein / Homo sapiens / 144.3 / 2
96 / IPI00478327.1 / OTTHUMP00000028841 / Homo sapiens / 22.6 / 2
IPI00221088.4 / 40S ribosomal protein S9 / Homo sapiens / 22.5 / 2
Contains peptides identified by MSMS that are specific for the accession number