Fig. 3 LOD profiles of both parental maps (‘Yesterday’ and R. wichurana), with 2 studied pathotypes (R-P and R-E). LOD score thresholds, chromosome-specific significance level of 5%. Significances were tested by permutation testing (100 iterations). LG = linkage group

Table 5Details of Kruskal-Wallis one-way analysis of variance tested for both pathotypesand both parental maps

Parental map of ‘Yesterday’

Pathotype / LG / Map position / Marker name / K value / significance
R-P / 2 / 51.960
53.629
57.411
57.731
59.469
62.065
64.836
66.897
70.138
72.541
72.766
73.744
76.896
78.702
79.994
/ Rh48
atc+caa-71
atc+cca-56
RhAB15
atc+cca-25
atc+cca-2
acc+cac-40
aac+caa-96
RhEO506
aca+caa-17
atc+ctc-34
atc+cga-19
atc+cga-13
agg+ctg-36
aag+cag-40
/ 9.090
0.038
3.794
0.358
0.160
0.307
0.000
1.102
16.299
3.358
0.349
1.018
0.198
0.083
0.036
/ **
-
*
-
-
-
-
-
*****
*
-
-
-
-
-
R-P / 3 / 0.000
6.203
11.137
13.709
18.791
26.488
30.389
32.621
32.951
35.799
36.971
37.729
37.916
37.946
37.946
38.236
38.703
38.785
39.170
39.414
/ act+cat-23
aca+caa-16
atc+caa-74
act+cat-9
agg+caa-39
RhM405
atc+ctc-35
atc+cca-48
aca+cag-34
acc+cat-42
act+cat-4
atc+caa-53
atc+caa-28
act+cat-13
act+cat-38
agg+caa-26
aac+cag-35
acc+cac-38
aag+ctt-8
atc+caa-7
/ 3.153
4.873
0.020
4.195
0.000
4.554
1.053
2.468
0.021
2.823
5.450
2.597
4.870
4.716
4.716
3.303
3.479
2.837
1.017
2.778
/ *
**
-
**
-
-
-
-
-
*
**
-
**
**
**
*
*
*
-
*
R-E / 3 / 0.000
6.203
11.137
13.709
18.791
26.488
30.389
32.621
32.951
35.799
36.971
37.729
37.916
37.946
37.946
38.236
38.703
38.785
/ act+cat-23
aca+caa-16
atc+caa-74
act+cat-9
agg+caa-39
RhM405
atc+ctc-35
atc+cca-48
aca+cag-34
acc+cat-42
act+cat-4
atc+caa-53
atc+caa-28
act+cat-13
act+cat-38
agg+caa-26
aac+cag-35
acc+cac-38
/ 0.304
2.763
1.467
2.572
1.453
2.814
2.762
0.724
0.885
3.422
3.006
0.064
4.392
4.254
4.254
3.059
4.113
3.306
/ -
-
-
-
-
-
*
-
-
*
*
-
**
**
**
*
**
*
R-E / 6 / 3.143
4.683
6.075
10.447
10.467
22.975
23.816
27.137
27.767
34.455
35.695
36.899
39.701
42.002
42.672
42.810
43.014
/ agg+ctg-27
agg+cag-6
aac+cag-15
atc+caa-51
aag+cag-2
atc+cta-27
Rw14H21
RhAB38
aca+caa-21
acc+cat-2
agg+ctg-23
aac+cag-2
atc+caa-24
atc+caa-22
aac+caa-43
act+cat-3
Rw18N19
/ 3.878
0.815
0.069
0.246
0.245
6.862
7.191
6.783
1.751
1.232
1.583
1.684
1.240
0.696
1.013
0.570
3.112
/ **
-
-
-
-
***
*
*
-
-
-
-
-
-
-
-
-

Significance levels: in this work the asterisk(s) *, **, ***, **** and ***** respectively indicate significance levels of P≤0.1, P≤0.05, P≤0.01, P≤0.005 and P≤0.001 for KW significance test

Parental map of Rosa wichurana

Pathotype / LG / Map Position / Marker name / K Value / Significance
R-P / 2 / 83.342
96.259
96.845
101.504
/ agg+caa-41
atc+cga-40
agg+cag-30
agg+cag-31
/ 0.625
3.152
0.407
0.027
/ -
*
-
-
R-P / 2 / 0.000
1.513
16.215
23.582
29.197
30.706
32.999
34.022
/ aca+cag-14
agg+cag-3
aca+caa-35
RhEO506
aca+caa-17
atc+cga-20
Rh48
01a6
/ 1.306
0.047
0.344
16.299
3.346
0.333
0.000
0.065
/ -
-
-
*****
*
-
-
-
R-P / 5 / 47.846
48.876
55.393
63.588
66.805
67.481
70.025
71.180
/ aag+cat-30
aac+cag-16
aac+caa-88
aag+cat-15
aag+cag-8
aag+cat-18
aac+caa-30
aac+caa-75
/ 0.012
0.032
3.490
1.058
0.030
0.244
1.301
1.114
/ -
-
*
-
-
-
-
-
R-E / 5 / 27.998
28.272
28.284
28.832
29.742
30.480
33.418
/ aag+cat-9
agg+ctg-28
act+cac-29
atc+cta-27
atc+caa-9
agg+caa-1
aac+caa-98
/ 0.063
6.368
6.746
1.534
5.489
1.835
1.453
/ -
**
***
-
**
-
-
R-E / 6 / 0.000
5.379
5.911
8.927
11.439
15.161
18.614
20.410
/ atc+caa-33
Rw14H21
acc+cat-6
RhAb38
aag+ctt-36
aac+cag-2
acc+cat-2
atc+cca-32
/ 0.534
1.538
0.674
6.783
4.926
1.684
0.000
2.900
/ -
-
-
*
**
-
-
*

Significance levels: in this work the asterisk(s) *, **, ***, **** and ***** respectively indicate significance levels of P≤0.1, P≤0.05, P≤0.01, P≤0.005 and P≤0.001 for KW significance test