Genome Coordinates and sequences
Glaberrima 1223 GAGGCCACCACCA------GTGTAAGTACTACA 1251
Rugfipogon 959 GTAGCCACCACCAatgaaacagcaacaa\(..\)cagaggccaccaccaGTGTAAGTACTACA 4498
Glaberrima 14303 CCTTGTAAATAAGcttttttttttggaa\(..\)tataaataagctaggGTTGATTATTAGAT 14366
Rufipogon 19109 TCTTATAAATAAG------\(..\)------GTTGATCATTAGAT 19135
Glaberrima 16232 TATTCAGCAACATcatcggtagctgcat\(..\)ctatttactcagcaaCATCAGTAGCTGC 27782
Rufipogon 20758 TATTCAGCAACAT------\(..\)------CATCAGTAGCTGC 20783
Glaberrima 36290 TAACAGAGTAGAG------\(..\)------TCCAGAACAT-tTT 36315
Rufipogon 29900 TAACAGAGTAGAGagatgcacttgataa\(..\)gctaacagagtagaaTCCAGAACATgcTT 30080
Glaberrima 36973 CTCCGATGTTAAGaaaatggcgagacgg\(..\)tctccgaagttaaaaAAAATAGCAAGAC 43167
Rufipogon 30979 CTCCGATGTTAAG------\(..\)------AAAATAACGAGAC 31008
Glaberrima 54792 TGTACTCATGTAAttctgat------\(..\)------atctagcaAACATATGCCAAT 54832
Rufipogon 47659 TGTACTCATGTAAattgcaatactgtaa\(..\)actcatgtaatttgcAACATATCTCAAT 47817
Glaberrima 66981 ACATCGCAAATGAacaaataccaagaaaatcacaacatcgcaaatgaTGACTTCGTAAGCAA 67035
Rufipogon 72730 ACATCGCAAATGA------TGACTTCGGAAGCAA 72751
Glaberrima 76652 AAGAAACAAGACTtacctgctatttttt\(..\)aaaaaaacctaaaggTACCTGCTATCAC 76831
Rufipogon 82849 AAGAAACAAAACT------\(..\)------TACCTGCTATCAC 82874
Glaberrima 88322 CTTATTTGGTCACaactgtagcattctg\(..\)tgcgtattaaaaaaaAACTGTAGCATTC 88874
Rufipogon 91635 CTTATTTGGTCAC------\(..\)------AACTGTAGCATTC 91657
Rufipogon 9879 CCTTCATCAGGAC------\(..\)------CGTGCAAACGTTG 9918
Japonica 6132 CCTTCATCAGGACcgtgcaaacggaatt\(..\)taaataaaaaaaattCGTGCAAACGTTG 6865
Rufipogon 23298 ATGAGATGTTAAG------TTGATATATCGGA 23323
Japonica 29782 ATGAGATGTTAAGttgatatatcagattaccatgcatcaTTGATATATCGGA 29833
Rufipogon 39317 CAGCCCACTAAAG------CTGCAATGCATGC 39342
Japonica 135486 CAGCCTACTAAAGctgcaaggccagaaggagacgccgcggggacaggcCTGCAATGCATAC 135546
Rufipogon 40362 AACATGCACAAGT------\(..\)------TTCACTCATCCTC 40387
Japonica 137314 AACATGCACAAGTttcactcatcctcct\(..\)caaaacatgcacaagTTCACTCGTCCTC 141426
Rufipogon 58456 CACAAACCTGCAT------\(..\)------AGCACTGAATAC 58480
Japonica 143496 CAGAAACCTGCATgttgctgtgtagaca\(..\)aacacaaacctgcatAGCACTGAATAC 192383
Rufipogon 78369 AGTATGCCTGACTtgagtttgctgcatt\(..\)tgagtgaaggaacagTGAGTTTGCTGCA 87427
Japonica 215283 AGTATGCCTGACT------\(..\)------TGAGTTTGCTGCA 215308
Indica 866944 GACCGTGCAAACG------TTGGCCGAGCGGC 866969
Japonica 723587 GACCGTGCAAACGgaattttttttattt\(..\)aaattcgtgcaaacgTTGGCCGAGCGGC 724306
Indica 868210 AGTAGAAGACTGAgaccgagacggaaga\(..\)ttaaaacagtttcccGACCGAGACAGTG 868623
Japonica 725531 AGTAGAAGACTGA------\(..\)------GACCGAGACAGTG 725556
Indica 859763 CACGACGGCGCCGggagatacatgaaga\(..\)nnnnnnnnnnnnnnnGGAGATACATGAA 905504
Japonica 726941 CACGACGGCGCCG------GGAGATACATGAA 726968
Indica 905857 TTGTCCCTAGTGTtcctcctctggattg\(..\)gcaaggttctcctgcTCCTGCTCTAGAT 915727
Japonica 727048 TTTTTCCTAGTGT------TCCTCCTCTAGAT 727075
Indica 916373 CCCAGGTGAATGA------GGTGATTGTAGTG 916400
Japonica 727719 CCCAGGTGACTGAcgcaattttgatggt\(..\)gccccaggtgaatgaGGTGATTGTAGTG 737717
Indica 921908 TCCTACAATAGTTttctactccctccat\(..\)gagggagtacatgttAAGCTCTTGCATT 922171
Japonica 743226 TCCTACAATAGTT------\(..\)------AAGCTCTTGCATT 743251
Indica 942858 TAGCTTCAGCATTTTACCAC------CTACCTACAAGCTAGCTGATTTGGCATCA 942906
Japonica 764107 CAGCTTCAGCATTTTACCACctacctacaagagCTAGCTACTAGCTAGCTGATTTGGCATCA 764170
Inidiac 944448 CGGATTAACTGTG------AAAGGAAATCGAAC 944473
Japonica 765702 CGGATTGACAGTGccaggcattctttgaagttccacccactaactgtgAAAGGAAATCGAAC 765752
Indica 945072 ACCTGCAGCATCTtttttttttagataa\(..\)ccacctgcagcatctGGAACGAGAACCC 945341
Japonica 766361 ACCTGCAGCATCT------\(..\)------GGAACGAGAACCC 766386
Indica 952722 TTATAAGGAATTA------\(..\)------AGGCGCTCACCTA 952747
Japonica 772980 TTATAAGGAATTAgagcctcactccggt\(..\)ttgctcaaggaattaAGGCGCTCACCTA 775269
Indica 967176 CTGGATTCTGGGC------\(..\)------AGCCAACAAGAAT 967202
Japonica 789684 CTGGATTCTGGGCagccaacaagaatgt\(..\)agtacgcatctgtcaAGCCAACAAGAAT 789890
Indica 987868 CACTTTTTTACCA------\(..\)------TATATTTGTTCGT 987893
Japonica 808745 CACTTTTTTACCAtatatttgttcgttg\(..\)acatatatgtaggtgTATATTTGTTCGT 808840
Indica 991708 AGCCGATTAGGTT------AAATACTAATATC 991735
Japonica 812657 AGCCGATTAGGTTtgacggagctcgtgg\(..\)atcaccgacaaggttAAATACTAATATC 828661
Indica 992729 GGTAAGAATCCAC------TGTTAGTGTGAAC 992756
Japonica 829755 GGTAAGAATCCACtgttagtgtgaacgc\(..)\gatcaagggggagaaTGTTAGTGTGAAC 836271
Indica 1004518 AGAGAGATTATAT------\(..\)------GGTGCTAACAGAG 1004543
Japonica 842018 AGAGAGATTATATggtgccaacagagta\(..\)ctccttttttttttgGGTGCTAACAGAG 842200
Indica 1006600 TCTCGGACAGTGT------AGAATATGATTAAACGTGGTATCGGGCTT 1006641
Japonica 844529 TCTCGGAGAGTGTagaatgcgggaggggattagAGAATATGATTAAACGTGGTATCGGGCTT 844590
Indica 1006962 CACGCTCCTCACA------\(..\)------ATCTCCTTACATC 1007187
Japonica 844908 CAGGCTCCTCACAatctcgttagaaata\(..\)cggtgaacttattccATCTCGTTACATC 846739
Indica 1007001 AACAAACAGTGAT------\(..\)------TGGAGGGGACCTG 1007027
Japonica 846753 AACAAACAGGGATtggagggggtaatcc\(..\)cccagtagcatttccTGGAGGGGACCTG 847626
Indica 1008301 TTACAGCCACAAA------\(..\)------ACACAGCCCCAAG 1008332
Japonica 848892 TTACAGGCACAAAacacgtgcaggatag\(..\)acctacagatttcctACACAGCCCCAAG 848971
Indica 1011714 CAATATACTCCCTccgtctcacaatata\(..\)gagggagtactacctAATTCTGCAATTC 1011975
Japonica 852352 CAATATACTACCT------\(..\)------AATTCTGCAATTC 852418
Indica 1012090 TACTCCTGGTACTgcataataattcaga\(..\)aaattaacaaaagcaGCAGAATACCCAG 1012168
Japonica 852492 TGCTCCTGGTACT------\(..\)------GCATAATACCCAG 852517
Indica 1013492 TAAATAAGTGTAC------AAGAAATATATCA 1013517
Japonica 854629 CAAATAAGTGTACaagaaatatatcactagttctaagaaaAAGAAATATATCA 854681
Indica 1013517 GGTTCATCATCACagaagaatggtcttg\(..\)gctgacccggcaaaaAGAAGAATGGTCT 1014982
Japonica 854829 GGTTCATCATCAC------\(..\)------AGAAGAATGGTCT 854854
Indica 1050122 TGACGCCAGGAATgcacactacaagaaa\(..\)gtttttgttgtagtgGCAGTCACACTAA 1050799
Japonica 921054 TGACGCCAGGAAT------\(..\)------GCAGTCACACTAA 921080
Indica 1054261 ACCACCGGGCAGCaattttttattaaaccaccgggcagcGGCACAGTTCGAT 1054312
Japonica 924538 ACCACCGGGCAGC------GGCACAGTTCGAT 924563
Indica 1056006 GGTGTAGCTATATggaataagttcaccg\(..\)tattcctagctatatTTATGGCGCCATA 1058952
Japonica 926241 GATGTAGCTATAT------\(..\)------TTATGGCGCCATA 926268
Indica 1065813 GAGTATTAATTTTggcaaaatttgctgc\(..\)tttgccattaattttTGGGACTTTTATG 1068633
Japonica 958034 GAGTATTAATTTT------\(..\)------TGGGACTTTTATG 958059
Indica 1068712 TCCAATAAAGTAGaacacggcaggatggattttttttcttttaactagGAGAGCCAAGCTC 1068772
Japonica 958139 TCCAATAAAGTAG------GAGAGCCAAGCTC 958164
Indica 1068773 CCCCCATTTCCATtaagggtgtatttag\(..\)ttgccaaacactgccTAAAAGAAATGAG 1068926
Japonica 958165 CCCCCATTTCCAT------\(..\)------TAAGAGAAATGAG 958189
Indica 1071345 ATATTCATATATA------\(..\)------ATTGAATAATTCAA1071370
Japonica 960151 ATATTCATATATAggccttgtttagttc\(..\)ctaaacacagccataATTGAATAATTCAA960328
Indica 1071551 ATCCAAACCTTCTacccggcgaaataatccaaaccttctTTTGTTCAATGAAA 1071602
Japonica 960560 ATCCAAACCTTCT------TTTGTTCAATGAAA 960585