Supplemental information:
DeFries-Fulker Augmented Analysis
Chromosome 1: phenotypes with p values <0.05 only
cM / GFTA / Woodcock / Omnibus23.99 / 0.147799 / 0.218976 / 0.139219
26.2 / 0.147898 / 0.174474 / 0.163826
31.9 / 0.086728 / 0.021324 / 0.058728
32.79 / 0.058917 / 0.017456 / 0.048535
36.04 / 0.019949 / 0.007547 / 0.029304
38.86 / 0.018842 / 0.018319 / 0.027772
39.6 / 0.017319 / 0.01897 / 0.032358
42.05 / 0.01901 / 0.027648 / 0.106173
43.66 / 0.015096 / 0.039312 / 0.108331
46.05 / 0.111473 / 0.009824 / 0.230745
49.56 / 0.049569 / 0.031653 / 0.147909
51.97 / 0.04368 / 0.083137 / 0.174296
53.45 / 0.056344 / 0.123694 / 0.203441
55.69 / 0.073968 / 0.081401 / 0.135473
61.42 / 0.139935 / 0.004671 / 0.090795
Chromosome 3: phenotypes with p values <0.05 only
cM position / Woodcock / GORTS / Omnibus / MLU_Z / TEGI_Z94.2 / 0.016909 / 0.009158 / 0.033054 / 0.227141 / 0.19871
95.95 / 0.02414 / 0.014158 / 0.034955 / 0.22676 / 0.286063
96.29 / 0.01636 / 0.015219 / 0.034548 / 0.235115 / 0.304541
98.99 / 0.146752 / 0.13605 / 0.101757 / 0.279997 / 0.357429
102.58 / 0.131562 / 0.172508 / 0.207107 / 0.452014 / 0.345711
104.14 / 0.112685 / 0.249909 / 0.155251 / 0.365938 / 0.429419
106.6 / 0.108131 / 0.08952 / 0.241359 / 0.296029 / 0.355762
106.76 / 0.049451 / 0.054854 / 0.139454 / 0.368041 / 0.458803
107.05 / 0.148128 / 0.062675 / 0.216825 / 0.412714 / 0.360729
108.51 / 0.060732 / 0.138363 / 0.206676 / 0.089849 / 0.497225
109.72 / 0.066534 / 0.201463 / 0.299504 / 0.171899 / 0.493923
111.25 / 0.036416 / 0.134074 / 0.198456 / 0.074662 / 0.173099
112.41 / 0.037434 / 0.170168 / 0.131075 / 0.044923 / 0.455183
114.59 / 0.116666 / 0.199512 / 0.385452 / 0.053568 / 0.325367
116.74 / 0.131311 / 0.179348 / 0.386625 / 0.098641 / 0.089297
119.35 / 0.125535 / 0.144273 / 0.342476 / 0.088358 / 0.082692
120.84 / 0.082952 / 0.271879 / 0.319996 / 0.111238 / 0.068256
124.52 / 0.040224 / 0.231049 / 0.49405 / 0.447054 / 0.047145
Chromosome 6: phenotypes with p values <0.05 only
cM position / GORTS / Omnibus / MLU_Z / TEGI_Z45.77 / 0.001621 / 0.011241 / 0.044453 / 0.006023
47.95 / 0.00193 / 0.021365 / 0.070432 / 0.000567
48.71 / 0.004338 / 0.007679 / 0.068007 / 0.001158
51.19 / 0.148536 / 0.036635 / 0.200007 / 0.00206
53.19 / 0.279118 / 0.044547 / 0.125955 / 0.006823
55.68 / 0.46418 / 0.027265 / 0.030319 / 0.009538
57.66 / 0.236319 / 0.005085 / 0.006556 / 0.021461
61.86 / 0.00473 / 0.001825 / 0.009439 / 0.011845
65.8 / 0.079162 / 0.004197 / 0.009177 / 0.010532
Chromosome 7: phenotypes with p values <0.05 only
cM position / GFTASTD / GORTS / 0mnibus / CTOPP_S115.66 / 0.00468 / 0.267733 / 0.003609 / 0.063037
118.18 / 0.002471 / 0.201502 / 0.002696 / 0.065227
119.61 / 0.001811 / 0.396498 / 0.033242 / 0.07693
122.34 / 0.002787 / 0.194548 / 0.007354 / 0.080893
123.59 / 0.002683 / 0.045794 / 0.016868 / 0.067181
124.45 / 0.003461 / 0.046738 / 0.00438 / 0.058664
125.69 / 0.002976 / 0.033169 / 0.004209 / 0.049083
126.56 / 0.005053 / 0.46798 / 0.021937 / 0.04478
Chromosome 15: phenotypes with p values <0.05 only
cM position / GFTASTD / GORTS / Omnibus37.16 / 0.039953 / 0.254581 / 0.231126
38.97 / 0.073969 / 0.220352 / 0.24017
40.15 / 0.075303 / 0.194512 / 0.234129
45.29 / 0.03588 / 0.093936 / 0.087725
45.72 / 0.040025 / 0.092832 / 0.08811
46.89 / 0.079422 / 0.080626 / 0.073037
47.92 / 0.125006 / 0.068142 / 0.050163
48.57 / 0.123933 / 0.061427 / 0.044601
49.77 / 0.035684 / 0.046288 / 0.052521
51.55 / 0.018535 / 0.055107 / 0.054072
55.77 / 0.046558 / 0.100075 / 0.227481
58.52 / 0.399128 / 0.209617 / 0.274292
Supplemental Information: SNP markers and results for Chromosome 6
rs3829810 / 24254651 / VMP
rs4607425 / 24270243 / DCDC2
rs1419228 / 24286285 / DCDC2
rs9460974 / 24296926 / DCDC2
rs793862 / 24315179 / DCDC2
rs1340697 / 24328372 / DCDC2
rs793839 / 24336664 / DCDC2
rs807701 / 24381770 / DCDC2
rs807724 / 24386848 / DCDC2
rs2328208 / 24393550 / DCDC2
rs2274305 / 24399182 / DCDC2
rs1417740 / 24433606 / DCDC2
rs6456605 / 24444995 / DCDC2
rs2753912 / 24455603 / DCDC2
rs793674 / 24455862 / DCDC2
rs6940827 / 24459280 / DCDC2
rs1087266 / 24463129 / DCDC2
rs10226011 / 24642172 / KIAA
rs1054899 / 24642172 / KIAA
rs12196913 / 24653286 / KIAA
rs807530 / 24653918 / KIAA
rs807533 / 24657885 / KIAA
rs2760179 / 24658972 / KIAA
rs807509 / 24690011 / KIAA
rs6901322 / 24691783 / KIAA / GORTS / T / 0.0470
rs6902039 / 24692160 / KIAA
rs2817201 / 24693193 / KIAA
rs9295626 / 24695318 / KIAA
rs4504469 / 24696863 / KIAA / GORTS / C / 0.0400
rs5026394 / 24698526 / KIAA
rs730860 / 24740406 / KIAA
rs761100 / 24740621 / KIAA
rs7755563 / 24746690 / KIAA
rs6935076 / 24752301 / KIAA
rs3756821 / 24754800 / KIAA
rs3212236 / 24756434 / TTRAP
Supplemental Information: SNP Markers and Results for Chromosome 7
Rs7785744 / 113531068 / Woodcockw / A / 0.0460
GORTS / A / 0.0130
Omnibus score / A / 0.0240
Rs1852638 / 113632185
Rs1450832 / 113650620
Rs1194329 / 113704386
Rs1358278 / 113750570
Rs2690833 / 113784860
Rs12705959 / 113785482
Rs12705960 / 113802943
Rs17137004 / 113816487 / Omnibus score / A / 0.0430
Rs1476535 / 113858271 / FOXP2
Rs4727799 / 113897804 / FOXP2
Rs12113612 / 113926920 / FOXP2
Rs17137124 / 113998050 / FOXP2
Rs12705966 / 114036087 / FOXP2
Rs7782412 / 114077651 / FOXP2
Rs12705970 / 114094386 / FOXP2
Rs10953766 / 114100454 / FOXP2
4