Electronic Supplementary Material Table 6. Tests of association of tSNP diplotypes (frequency >5%) with phenotypes

Diplotypea / Frequency / Leptin / BMI / Weight / Total fat / % Total fat / Waist / Central fat / % Central fat / Fasting glucose / 2-h Glucose
beta / p value / beta / p value / beta / p value / beta / p value / beta / p value / beta / p value / beta / p value / beta / p value / beta / p value / beta / p value
Hap1-Hap1b / 0.200 / – / – / – / – / – / – / – / – / – / – / – / – / – / – / – / – / – / – / – / –
Hap1-Hap2 / 0.365 / – / NS / – / NS / – / NS / – / NS / – / NS / – / NS / – / NS / – / NS / – / NS / 0.2 / 0.024
Hap1-Hap3 / 0.069 / – / NS / 0.91 / 0.031 / 1.91 / 0.079 / 2.07 / 0.012 / 2.01 / 0.006 / 2.29 / 0.016 / 0.16 / 0.004 / 3.13 / 0.003 / – / NS / 0.35 / 0.044
Hap2-Hap2 / 0.146 / – / NS / – / NS / – / NS / – / NS / – / NS / – / NS / – / NS / – / NS / 0.078 / 0.051 / 0.24 / 0.028
Hap2-Hap3 / 0.058 / 2.87 / 0.060 / 0.94 / 0.017 / 3.00 / 0.006 / 1.87 / 0.044 / 1.29 / 0.065 / 1.95 / 0.035 / 0.11 / 0.09 / 1.85 / 0.065 / – / NS / 0.29 / 0.082
Explained var.%/Overall p / – / NS / 0.47 / 0.027 / 0.41 / 0.04 / 0.32 / 0.034 / 0.37 / 0.042 / 0.34 / 0.042 / 0.42 / 0.022 / 0.33 / 0.027 / 0.53 / 0.099 / 1.34 / 0.054

aDiplotype rs7713645-rs7709243-rs1550805

Hap1, 111; Hap2, 221; Hap3, 222

bEstimates are contrasts with this diplotype